Tan0000785 (gene) Snake gourd v1

Overview


Name	Tan0000785
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG07: 60734463 .. 60734723 (+)
RNA-Seq Expression	Tan0000785
Synteny	Tan0000785

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCACCGCAAAGGAGATCATGGGATCATTACAAGCGATGTTTGGACAAACGTGCTCATCGGTCCATTATGATACTGTCAAATACGTTTACAACTCCCGTATGAAGGAGGGAGCCTCTGTTAGGGAACATATCCTTGACATGATGACCCACTTCAACGTGGCTGAAGTAAATGGGGCAGTCATAAATGAGAAAAGTCAGGTAACCTTTATTATGGAATCTCTTAGAAGAGTTTCCTGCCATTCCGCACAAATGCGATGA

mRNA sequence

ATGGTCACCGCAAAGGAGATCATGGGATCATTACAAGCGATGTTTGGACAAACGTGCTCATCGGTCCATTATGATACTGTCAAATACGTTTACAACTCCCGTATGAAGGAGGGAGCCTCTGTTAGGGAACATATCCTTGACATGATGACCCACTTCAACGTGGCTGAAGTAAATGGGGCAGTCATAAATGAGAAAAGTCAGGTAACCTTTATTATGGAATCTCTTAGAAGAGTTTCCTGCCATTCCGCACAAATGCGATGA

Coding sequence (CDS)

ATGGTCACCGCAAAGGAGATCATGGGATCATTACAAGCGATGTTTGGACAAACGTGCTCATCGGTCCATTATGATACTGTCAAATACGTTTACAACTCCCGTATGAAGGAGGGAGCCTCTGTTAGGGAACATATCCTTGACATGATGACCCACTTCAACGTGGCTGAAGTAAATGGGGCAGTCATAAATGAGAAAAGTCAGGTAACCTTTATTATGGAATCTCTTAGAAGAGTTTCCTGCCATTCCGCACAAATGCGATGA

Protein sequence

MVTAKEIMGSLQAMFGQTCSSVHYDTVKYVYNSRMKEGASVREHILDMMTHFNVAEVNGAVINEKSQVTFIMESLRRVSCHSAQMR

Homology

[Close]

BLAST of Tan0000785 vs. NCBI nr
Match: XP_038876370.1 (uncharacterized protein LOC120068812, partial [Benincasa hispida])

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-21
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQTCSSVHYDTVKYVYNSRMKEGASVREHILDMMTHFNVAEVNGA 60
           MVTAKEIM SLQA+FGQ  SS  +D +K+VYN RMKEG +VREH+LDMM HFN+ EVN A
Sbjct: 88  MVTAKEIMNSLQALFGQPSSSAMHDAIKWVYNCRMKEGPNVREHVLDMMVHFNITEVNRA 147

Query: 61  VINEKSQVTFIMESL 76
           V+NEKSQV FIMESL
Sbjct: 148 VMNEKSQVGFIMESL 162

[Close]

BLAST of Tan0000785 vs. NCBI nr
Match: XP_038880476.1 (uncharacterized protein LOC120072136 [Benincasa hispida])

HSP 1 Score: 111.3 bits (277), Expect = 4.2e-21
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQTCSSVHYDTVKYVYNSRMKEGASVREHILDMMTHFNVAEVNGA 60
           MV AKEIM SLQA+FGQ  SS  +D +KYVYN RMKEG +VREH+LDMM HFN+ EVNGA
Sbjct: 88  MVMAKEIMDSLQALFGQPSSSAMHDAIKYVYNFRMKEGTNVREHVLDMMVHFNIVEVNGA 147

Query: 61  VINEKSQVTFIMESL 76
           V+NEK+Q  FIMESL
Sbjct: 148 VMNEKNQGGFIMESL 162

[Close]

BLAST of Tan0000785 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 2.1e-20
Identity = 51/75 (68.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQTCSSVHYDTVKYVYNSRMKEGASVREHILDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ    + +D +KY+YN+RM EGASVREH+L+MM HFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VINEKSQVTFIMESL 76
           VI+E SQV+FI+ESL
Sbjct: 148 VIDEASQVSFILESL 162

[Close]

BLAST of Tan0000785 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 2.1e-20
Identity = 51/75 (68.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQTCSSVHYDTVKYVYNSRMKEGASVREHILDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ    + +D +KY+YN+RM EGASVREH+L+MM HFNVAE+NGA
Sbjct: 87  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 146

Query: 61  VINEKSQVTFIMESL 76
           VI+E SQV+FI+ESL
Sbjct: 147 VIDEASQVSFILESL 161

[Close]

BLAST of Tan0000785 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 2.1e-20
Identity = 51/75 (68.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQTCSSVHYDTVKYVYNSRMKEGASVREHILDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ    + +D +KY+YN+RM EGASVREH+L+MM HFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VINEKSQVTFIMESL 76
           VI+E SQV+FI+ESL
Sbjct: 148 VIDEASQVSFILESL 162

[Close]

BLAST of Tan0000785 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-20
Identity = 51/75 (68.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQTCSSVHYDTVKYVYNSRMKEGASVREHILDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ    + +D +KY+YN+RM EGASVREH+L+MM HFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VINEKSQVTFIMESL 76
           VI+E SQV+FI+ESL
Sbjct: 148 VIDEASQVSFILESL 162

[Close]

BLAST of Tan0000785 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-20
Identity = 51/75 (68.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQTCSSVHYDTVKYVYNSRMKEGASVREHILDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ    + +D +KY+YN+RM EGASVREH+L+MM HFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VINEKSQVTFIMESL 76
           VI+E SQV+FI+ESL
Sbjct: 148 VIDEASQVSFILESL 162

[Close]

BLAST of Tan0000785 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-20
Identity = 51/75 (68.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQTCSSVHYDTVKYVYNSRMKEGASVREHILDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ    + +D +KY+YN+RM EGASVREH+L+MM HFNVAE+NGA
Sbjct: 205 MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 264

Query: 61  VINEKSQVTFIMESL 76
           VI+E SQV+FI+ESL
Sbjct: 265 VIDEASQVSFILESL 279

[Close]

BLAST of Tan0000785 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-20
Identity = 51/75 (68.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQTCSSVHYDTVKYVYNSRMKEGASVREHILDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ    + +D +KY+YN+RM EGASVREH+L+MM HFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VINEKSQVTFIMESL 76
           VI+E SQV+FI+ESL
Sbjct: 148 VIDEASQVSFILESL 162

[Close]

BLAST of Tan0000785 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-20
Identity = 51/75 (68.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQTCSSVHYDTVKYVYNSRMKEGASVREHILDMMTHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ    + +D +KY+YN+RM EGASVREH+L+MM HFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VINEKSQVTFIMESL 76
           VI+E SQV+FI+ESL
Sbjct: 148 VIDEASQVSFILESL 162

The following BLAST results are available for this feature:

BLAST of Tan0000785 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0000785 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876370.1	1.4e-21	73.33	uncharacterized protein LOC120068812, partial [Benincasa hispida]	[more]
XP_038880476.1	4.2e-21	72.00	uncharacterized protein LOC120072136 [Benincasa hispida]	[more]
KAA0044955.1	2.1e-20	68.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	2.1e-20	68.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	2.1e-20	68.00	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0000785 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	1.0e-20	68.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.0e-20	68.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	1.0e-20	68.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	1.0e-20	68.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	1.0e-20	68.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Tan0000785 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 3..75 e-value: 1.4E-7 score: 31.4
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..73
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000785.1	Tan0000785.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding