Tan0000775 (gene) Snake gourd v1

Overview


Name	Tan0000775
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Zinc finger and BTB domain-containing protein 47
Location	LG02: 88194418 .. 88195434 (-)
RNA-Seq Expression	Tan0000775
Synteny	Tan0000775

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCAATCCATCTATCATCTAATCGCCCTTTCAAATTCCCATTTCAACTCATTGTCTCTTTTGCTTTTGTAGCCCTCTTCTTCTCTGCAATCGCCATCGCAATCCGCCCCTTTTCTAAACCCATCAAAACTAAAATTTCTACTGGATTTTGATTCAACTTATTCCTCTTTTTTCTGGGTCTTCTTCTTCTTCTTCAATTTTCCCTTACCCTTTTCTTCTAATTTTCAATTTCTTCCTCCTCCTTCTTCCAAGTTTCATGTGAACTGATGGATTTAGTTCTGGTTTTTCATTGAACAATCTCTGGATTTACTGGGTTTTTTAATTATTTGGCCTCTGTGATTTTTTGTTTGTTTGTTTGTTTGATGGGAAAGAAGAAAACCCAGAAGATTAAGGAGATTGCAGTCGCCATAGCTGAAACTTCCACCTCTAAATTACCCGATGATGGCGGCGCCCAATCTGTACAGCCCAGAAAGAGGGGCCGACCTCGTAAGGTTGAGACACAGAACGAACAGGAGAACAAGAAGCTGCCGCCGCCGCCGGCGGATATTGCAGATAAACCGCCGGAGAAGAAGGCGAAAACCACCGGAGATGAGCCGCCGGCGACGGCACCGGCGTCTTCCATGGAAGGAGCTTCAAAAGAACAAGAACAAGTAGAACCCAAATCAAGAGATGGTTCGAGAAGCAGAGGAAGGCGAAAGAACAAACCCAGAAAAAGCAGCTAACGAGAGTAATCGATTTTAATTTGTTTCTTTCTTCTTCGATTTAGAAATCTGAAAGCCTGAAGAAAAATCTCTGGTTTTCATTTCTCTTTTTTTTTTTTTTTTTTTTTTTTATTTGTGGGTTTTAATTTGTTCAGAAGTTCGTCGATTGCAAGAAAATCGAGAAAGGGGAAATTGTATTGTGTTGTATTATATTGTATTTGATGGGATGGGCTTTGGATTTTATTGTTCATCTGCTGATCATTCAAATTTCAAACCACAAAGAATTTGCAATCTGAATTGGAAAAAAATTCAGTTT

mRNA sequence

CATCAATCCATCTATCATCTAATCGCCCTTTCAAATTCCCATTTCAACTCATTGTCTCTTTTGCTTTTGTAGCCCTCTTCTTCTCTGCAATCGCCATCGCAATCCGCCCCTTTTCTAAACCCATCAAAACTAAAATTTCTACTGGATTTTGATTCAACTTATTCCTCTTTTTTCTGGGTCTTCTTCTTCTTCTTCAATTTTCCCTTACCCTTTTCTTCTAATTTTCAATTTCTTCCTCCTCCTTCTTCCAAGTTTCATGTGAACTGATGGATTTAGTTCTGGTTTTTCATTGAACAATCTCTGGATTTACTGGGTTTTTTAATTATTTGGCCTCTGTGATTTTTTGTTTGTTTGTTTGTTTGATGGGAAAGAAGAAAACCCAGAAGATTAAGGAGATTGCAGTCGCCATAGCTGAAACTTCCACCTCTAAATTACCCGATGATGGCGGCGCCCAATCTGTACAGCCCAGAAAGAGGGGCCGACCTCGTAAGGTTGAGACACAGAACGAACAGGAGAACAAGAAGCTGCCGCCGCCGCCGGCGGATATTGCAGATAAACCGCCGGAGAAGAAGGCGAAAACCACCGGAGATGAGCCGCCGGCGACGGCACCGGCGTCTTCCATGGAAGGAGCTTCAAAAGAACAAGAACAAGTAGAACCCAAATCAAGAGATGGTTCGAGAAGCAGAGGAAGGCGAAAGAACAAACCCAGAAAAAGCAGCTAACGAGAGTAATCGATTTTAATTTGTTTCTTTCTTCTTCGATTTAGAAATCTGAAAGCCTGAAGAAAAATCTCTGGTTTTCATTTCTCTTTTTTTTTTTTTTTTTTTTTTTTATTTGTGGGTTTTAATTTGTTCAGAAGTTCGTCGATTGCAAGAAAATCGAGAAAGGGGAAATTGTATTGTGTTGTATTATATTGTATTTGATGGGATGGGCTTTGGATTTTATTGTTCATCTGCTGATCATTCAAATTTCAAACCACAAAGAATTTGCAATCTGAATTGGAAAAAAATTCAGTTT

Coding sequence (CDS)

ATGGGAAAGAAGAAAACCCAGAAGATTAAGGAGATTGCAGTCGCCATAGCTGAAACTTCCACCTCTAAATTACCCGATGATGGCGGCGCCCAATCTGTACAGCCCAGAAAGAGGGGCCGACCTCGTAAGGTTGAGACACAGAACGAACAGGAGAACAAGAAGCTGCCGCCGCCGCCGGCGGATATTGCAGATAAACCGCCGGAGAAGAAGGCGAAAACCACCGGAGATGAGCCGCCGGCGACGGCACCGGCGTCTTCCATGGAAGGAGCTTCAAAAGAACAAGAACAAGTAGAACCCAAATCAAGAGATGGTTCGAGAAGCAGAGGAAGGCGAAAGAACAAACCCAGAAAAAGCAGCTAA

Protein sequence

MGKKKTQKIKEIAVAIAETSTSKLPDDGGAQSVQPRKRGRPRKVETQNEQENKKLPPPPADIADKPPEKKAKTTGDEPPATAPASSMEGASKEQEQVEPKSRDGSRSRGRRKNKPRKSS

Homology

[Close]

BLAST of Tan0000775 vs. NCBI nr
Match: KAG7020516.1 (hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.9 bits (372), Expect = 5.5e-32
Identity = 92/123 (74.80%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 1   MGKKKTQKIKEIAVAIAETSTSKLPDDGGA----QSVQPRKRGRPRKVETQNEQENKKLP 60
           MGKKKTQK K+I+VAIAETSTSKLPDDGGA    QSVQPRKRGRPRKV      ++KKLP
Sbjct: 1   MGKKKTQKTKQISVAIAETSTSKLPDDGGAHGGGQSVQPRKRGRPRKV-LDEPPDDKKLP 60

Query: 61  PPPADIADKPPEKKAKTTGDEPPATAPASSMEGASKEQEQVEPKSRDGSRSRGRRKNKPR 120
           PPPAD+ADKP +KK K+TGDEPP      SMEGASK+ E  EPKS DGSRSRGRRKNKPR
Sbjct: 61  PPPADVADKPLQKKGKSTGDEPP-----DSMEGASKQHESEEPKSGDGSRSRGRRKNKPR 117

[Close]

BLAST of Tan0000775 vs. NCBI nr
Match: XP_023002541.1 (uncharacterized protein LOC111496353 [Cucurbita maxima])

HSP 1 Score: 144.8 bits (364), Expect = 4.7e-31
Identity = 90/123 (73.17%), Postives = 97/123 (78.86%), Query Frame = 0


Query: 1   MGKKKTQKIKEIAVAIAETSTSKLPDD----GGAQSVQPRKRGRPRKVETQNEQENKKLP 60
           MGKKKTQK K+I+VAIAETSTSKLPDD    GG QS QPRKRGRPRKV  +   + K LP
Sbjct: 33  MGKKKTQKTKQISVAIAETSTSKLPDDGGGHGGGQSEQPRKRGRPRKVLDEPPDDKKLLP 92

Query: 61  PPPADIADKPPEKKAKTTGDEPPATAPASSMEGASKEQEQVEPKSRDGSRSRGRRKNKPR 120
           PP AD+ADKP +KK KTTGDEPP      SMEGASK+QE  EPKS DGSRSRGRRKNKPR
Sbjct: 93  PPAADVADKPLQKKGKTTGDEPPI-----SMEGASKQQESEEPKSGDGSRSRGRRKNKPR 150

[Close]

BLAST of Tan0000775 vs. NCBI nr
Match: XP_023537340.1 (uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 6.1e-31
Identity = 89/123 (72.36%), Postives = 97/123 (78.86%), Query Frame = 0


Query: 1   MGKKKTQKIKEIAVAIAETSTSKLPDD----GGAQSVQPRKRGRPRKVETQNEQENKKLP 60
           MGKKKTQK K+I+VAIAE STSKLPDD    GG QSVQPRKRGRPRKV  +   + K LP
Sbjct: 1   MGKKKTQKTKQISVAIAEISTSKLPDDGGGHGGGQSVQPRKRGRPRKVLDEPPDDKKLLP 60

Query: 61  PPPADIADKPPEKKAKTTGDEPPATAPASSMEGASKEQEQVEPKSRDGSRSRGRRKNKPR 120
           PPPAD+ADKP +KK K+TGDEPP      SMEGASK+ E  EPKS DGSRSRGRRKNKPR
Sbjct: 61  PPPADVADKPLQKKGKSTGDEPPI-----SMEGASKQHESEEPKSGDGSRSRGRRKNKPR 118

[Close]

BLAST of Tan0000775 vs. NCBI nr
Match: KAA0065239.1 (zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 2.2e-28
Identity = 89/124 (71.77%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 1   MGKKKTQKIKEIAVAIAETSTSKLPDDGGAQSVQPRKRGRPRKV--ETQNEQENKKLPPP 60
           MGKKKTQK KEIAVAIAETSTSKL DDG  QS+QPRKRGRPRKV  E QNEQENKKLPPP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP 60

Query: 61  P---ADIADKPPEKKAKTTGDEPPATAPASSMEGASKEQEQVEPKSRDGSRSRGRRKNKP 120
           P    ++ + PPEKK K T DEPP   P S  EG+ +E    EPK+ DGSRSRGRRKNKP
Sbjct: 61  PPLLPEVEENPPEKKIKATVDEPP---PGSVKEGSKQE----EPKTGDGSRSRGRRKNKP 117

[Close]

BLAST of Tan0000775 vs. NCBI nr
Match: XP_038884964.1 (uncharacterized protein LOC120075548 [Benincasa hispida])

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27
Identity = 86/121 (71.07%), Postives = 95/121 (78.51%), Query Frame = 0


Query: 1   MGKKKTQKIKEIAVAIAETSTSKLPDDGGAQSVQPRKRGRPRKV--ETQNEQENKKLPPP 60
           MGKKK QK KEIAVAIAETS SKL DDG  QS+QPRKRGRPRKV  E QN+QENKKL PP
Sbjct: 1   MGKKKPQKTKEIAVAIAETSASKLADDGIGQSIQPRKRGRPRKVLDEPQNKQENKKLLPP 60

Query: 61  PADIADKPPEKKAKTTGDEPPATAPASSMEGASKEQEQVEPKSRDGSRSRGRRKNKPRKS 120
             ++A+ PPEKKAKTT D+PP   P S  EG+    +Q EPK+ DGSRSRGRRKNKPRKS
Sbjct: 61  LPEVAENPPEKKAKTTVDQPP---PGSMEEGS----KQGEPKTGDGSRSRGRRKNKPRKS 114

[Close]

BLAST of Tan0000775 vs. ExPASy TrEMBL
Match: A0A6J1KLK8 (uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.3e-31
Identity = 90/123 (73.17%), Postives = 97/123 (78.86%), Query Frame = 0


Query: 1   MGKKKTQKIKEIAVAIAETSTSKLPDD----GGAQSVQPRKRGRPRKVETQNEQENKKLP 60
           MGKKKTQK K+I+VAIAETSTSKLPDD    GG QS QPRKRGRPRKV  +   + K LP
Sbjct: 33  MGKKKTQKTKQISVAIAETSTSKLPDDGGGHGGGQSEQPRKRGRPRKVLDEPPDDKKLLP 92

Query: 61  PPPADIADKPPEKKAKTTGDEPPATAPASSMEGASKEQEQVEPKSRDGSRSRGRRKNKPR 120
           PP AD+ADKP +KK KTTGDEPP      SMEGASK+QE  EPKS DGSRSRGRRKNKPR
Sbjct: 93  PPAADVADKPLQKKGKTTGDEPPI-----SMEGASKQQESEEPKSGDGSRSRGRRKNKPR 150

[Close]

BLAST of Tan0000775 vs. ExPASy TrEMBL
Match: A0A5A7VIE6 (Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005800 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.1e-28
Identity = 89/124 (71.77%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 1   MGKKKTQKIKEIAVAIAETSTSKLPDDGGAQSVQPRKRGRPRKV--ETQNEQENKKLPPP 60
           MGKKKTQK KEIAVAIAETSTSKL DDG  QS+QPRKRGRPRKV  E QNEQENKKLPPP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIGQSIQPRKRGRPRKVLDEQQNEQENKKLPPP 60

Query: 61  P---ADIADKPPEKKAKTTGDEPPATAPASSMEGASKEQEQVEPKSRDGSRSRGRRKNKP 120
           P    ++ + PPEKK K T DEPP   P S  EG+ +E    EPK+ DGSRSRGRRKNKP
Sbjct: 61  PPLLPEVEENPPEKKIKATVDEPP---PGSVKEGSKQE----EPKTGDGSRSRGRRKNKP 117

[Close]

BLAST of Tan0000775 vs. ExPASy TrEMBL
Match: A0A0A0LRH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.6e-24
Identity = 84/122 (68.85%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 1   MGKKKTQKIKEIAVAIAETSTSKLPDDG-GAQSVQPRKRGRPRKV--ETQNEQENKKLPP 60
           MGKKKTQK KEIAVAIAETSTSKL DDG   Q +QPRKRGRPRKV  E QNEQE+KK PP
Sbjct: 1   MGKKKTQKTKEIAVAIAETSTSKLADDGIIGQPIQPRKRGRPRKVLEEQQNEQESKKPPP 60

Query: 61  PPADIADKPPEKKAKTTGDEPPATAPASSMEGASKEQEQVEPKSRDGSRSRGRRKNKPRK 120
           P  ++A+ PPEKK K T DE    A  S +EG+ +E    EPK+ DGSRSRGRRKNKPRK
Sbjct: 61  PLLEVAENPPEKKIKGTVDE---AALGSMIEGSKEE----EPKTGDGSRSRGRRKNKPRK 115

[Close]

BLAST of Tan0000775 vs. ExPASy TrEMBL
Match: A0A7N2KSD2 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 56/136 (41.18%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 1   MGKKKTQKIKEIAVAIAETSTSKLPDDGGAQSVQPRKRGRPRKV------ETQNEQENKK 60
           MGKKK QK KE++VAIAE S +        QS  PRKRGRPRK+      + + E+E++ 
Sbjct: 1   MGKKKPQKTKELSVAIAEASITGDEGQQQPQSQTPRKRGRPRKIIEKPESQDKKEEESES 60

Query: 61  LPPPPADIADKPPEKKAKTTGDE----PPATAPASSME-GASKEQE------QVEPKSRD 120
           +     D  ++   K+ KT+ +E    P     ++SM  GASK++E      +V PK   
Sbjct: 61  VAKEAEDTTNESQSKRVKTSEEEEEEQPKGEGSSASMGLGASKKEEDQTEKREVLPKEPP 120

[Close]

BLAST of Tan0000775 vs. ExPASy TrEMBL
Match: A0A7J7DL70 (Zinc finger and BTB domain-containing protein 47 OS=Tripterygium wilfordii OX=458696 GN=HS088_TW06G01291 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 0


Query: 1   MGKKKTQKIKEIAVAIAE-TSTSKLPDDGGAQSVQPRKRGRPRKVETQNEQ-ENKKLPPP 60
           MGKKK QK KE++VAIAE +ST +      + S  PRKRGRPRK+  + E  E K+ P  
Sbjct: 1   MGKKKPQKTKELSVAIAEASSTGEETQQAQSPSQTPRKRGRPRKILEKTESLEQKEEPAE 60

Query: 61  PA---DIADKPPEKKAKTTGDEPP------------ATAPASSMEGASKEQEQ-VEPKSR 120
           P+   ++ +    KK K +G EPP            A AP+ S  G+ KE  Q  E +S 
Sbjct: 61  PSAAQEVEESSQSKKPKISGGEPPELHQQQEPVKAEAGAPSGSTRGSKKEDGQTAEKESI 120

The following BLAST results are available for this feature:

BLAST of Tan0000775 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0000775 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020516.1	5.5e-32	74.80	hypothetical protein SDJN02_17201, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023002541.1	4.7e-31	73.17	uncharacterized protein LOC111496353 [Cucurbita maxima]	[more]
XP_023537340.1	6.1e-31	72.36	uncharacterized protein LOC111798433 [Cucurbita pepo subsp. pepo]	[more]
KAA0065239.1	2.2e-28	71.77	zinc finger and BTB domain-containing protein 47 [Cucumis melo var. makuwa]	[more]
XP_038884964.1	3.2e-27	71.07	uncharacterized protein LOC120075548 [Benincasa hispida]	[more]

BLAST of Tan0000775 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLK8	2.3e-31	73.17	uncharacterized protein LOC111496353 OS=Cucurbita maxima OX=3661 GN=LOC111496353...	[more]
A0A5A7VIE6	1.1e-28	71.77	Zinc finger and BTB domain-containing protein 47 OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0LRH2	1.6e-24	68.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361610 PE=4 SV=1	[more]
A0A7N2KSD2	1.6e-05	41.18	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7J7DL70	1.1e-04	41.61	Zinc finger and BTB domain-containing protein 47 OS=Tripterygium wilfordii OX=45...	[more]

BLAST of Tan0000775 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..119
None	No IPR available	PANTHER	PTHR37615	NUCLEOPORIN NUP159-LIKE	coord: 1..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000775.1	Tan0000775.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane