Tan0000653 (gene) Snake gourd v1

Overview
NameTan0000653
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
LocationLG04: 69787423 .. 69790240 (-)
RNA-Seq ExpressionTan0000653
SyntenyTan0000653
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTCGTCTCTTTTGTGGTTTGGTAGTATGGACGAAGACGAGTGTACCAAACAACTTGAAAGGCTATAGCTCTTAGAGGACGGAAAAGCTCGTGTGGTAGATATTGAAGACGATGAACTGAATATCACAGACAAAAACCTATAACTCTCGACTATTGTTGCGTAAAATTATTTTGCAATACCACAAGTGTACGAGTCAAGTTTTAGTATAGTGATTTAGAGTTCCAAGTATCGTCCTCGGGAATGGGTTTCTAGATTAATTAATTACGAAGATACTTATTCTCAATTTTATCTACAGCAACAAAACATGGATAGGAGGTGAAACAAAAATTAAAGACAAACAAACATGTGGAGACACGAATTTATAGATTTAAAGGAAATTGACCTTGCAAATCAACACTTAATTACACATGCAATGAATAAATGAGATGAATTTATAAACAAGAAGTAAATTACTCAAGAAAGTCTCTTGATCTCTCAAGAGCCTCGCACATACAATAAATCCTATAGTCTCCATATAAAATCTAAGCATGCACGACATTAAGCAACTTCTTTATGTGTTTCCCTTAAACTTCTAAGTCATTCTCATGCCAGAATTCTAAGGGTTTTGACAACCTTGTTCTAATTTAAGTTTTTTCTCTCGAGTCCACTTAAACCAAAGATATAAATGAAATTAAGAATGAATTGCCAAAAATAAAGATCAAAACATACTTCAATACATGGCAAAGAAGTCTTAATAAGCAAACCAAATCCTAACTACAATATTTAGCTACTCTAAATCATATGAAAACTAAGCTAAACATGTAGGAAACGTCTTAGAACGCTATTACAAATTGAAAGAAAGAGGAATTAAACTTATGTGTTGATGCCGGTCCTTCGTCTCCGAGCTCCCGTCTTCGATCTCGAACCTCCACGAATGCTTTGGCTCCCAAAATGCTCTTTTCTCTTTTCTTACAAAGTGTATTTCGAAATTAGGGTGGAAAATCTACCAAATTCGGCTCCCCTTTTACACAATGCATAATGTTCTATTTATAGGCATCATCGGTGCAGCGTTGCAACGTTGTACCCTAAACGCGTGGTAAATAAAGAAAAGCGATCGATGGCGTTGTAACGCGAGCGGCGCGCTGCAACGCCGCTTACCCTAACGCGCGCTTCTTATCGATCCGGCGTTGCGACGCCGCTGCAAGCGCGGCGTTGCAGCGCCCAAGCATCTTGATTTCTTCATGTGCGCTTCCTTATCGAGATAGCGTTGCGACGTTGCCCTAGCAGCGTCGCAACGCTATCGCCTGGGGTCATCAACGCCTTTAATCAGCACATTCGGCGTTGCAATGCTATAGACAGCGTTGCAATGCCATCACCTCGGGTCATCATGCTTGGATTGGTCCTTTCTCTTCTAATTGGTATTATTTTTAGCTCCAAATAGCCTCGTTTTGATCCCGAGTGATCTAATTTGTCTCCAATAGCTCAGTTTAAGCTCTTAACCTGAAATTGAATGAATTAAACACGTAAAAGTCCTGAAATCATCATAAAACTAGCAATAATTAAGCCTAAGGATAACACATTTTGTGTGCTATCAACTATGTGCAGGGTTTTCTCACACAAGCAAATAATCAATGACATTTTCAAGTGTATTGTTCCGAAGATATGGAATCTAGAAGATAAAGTGAAGATTAAAGCTAGTGCAAGGAATACCTTTCTGTGTACTTTCAGGAATGCAAAATAAAAGAAGAGAATCACAGAAGGAGGACCGTGGATTTTCAACAAGGGGATTCTCGTGTTTGAGGAAGTCAAGGGAAATATTCGTTACTCCAACCTGCAATTCAGGTACGCACAATTTTGGGTTCACATAAGGGATTTACTGTTAGTTTGTCATTGCAGGAAATGGGCTAAGGCGATCGGGAACTCCATAGGGACCTTTATGGACGTTGAAACTGATGAAAATGATGAATGTGCGGGAGACTCCCTAAGGATAAAAGTCAAGTTCGATATACAAAAACCCTTATGCAGGGGAACTAACATAAAGGTAGGATCCATGGCTGAGGAAGTCTGGTACCCGATAACTTACGAGAAACTGCAGGAATTCTGTTATCGGTGTAGCAGACTGGGGCATGTGTATAAGGATTGTAAGGAACAACAAGACAAGCTAGAAGGCGCAACTCGGTTTGGATAATGGATAAGGGAAAATAATAGACCAAAAGGACGATCAACGGTACGAAGAAAGGATCAATTTTTTAGGGAAGTAAGTGTTAGTGGCAAAGGGCGATCTAATTTGCAAAACAGTAGAGGCGTTTACGCAACTCAAGCAAGGAAGAAAGACGAAGAAGACTCTCAAACAGATAAAAATCTCCCTTCATTTTCCGACACTGGTTCCGGCGAGGATGACAACAGTCGTGAGGACGTCAGTACGGAAAAGGAAAAGTTACACGGGGAGAAGGAGTGTGAAAGTACACATAATCATCATAACAGTAGTACTGAAAAGGATTGTCACATCTGTATATCTAGTCAGGGTATGTGGATTAGGTTTGTTGAGGAGGCCACGCTTGTTACCGTTGGGAGGAAAATGGAGGCTATGAATGATGGAGTTTTAGGAAAAGGAATAAAAGGAGAAAAGGTTAACGAACCTATCAAGCCAGACTCAGCAGAGTCTAAGGAGCTTATGTCGAACAAACCTAAAGGGAAATGGCTAAAAACTTGGAAGCGACAAACAAAAACAAAACTGGTTGGAATAAGGAAAATGACATACAAACTCAACCATTATTGGTTAGGAAACACAAAGAAGGGAGGGGGGGGGGGGAAGAGGTCGAACATGGTGTGA

mRNA sequence

ATGGTTGTCGTCTCTTTTGTGGTTTGGAAATGGGCTAAGGCGATCGGGAACTCCATAGGGACCTTTATGGACGTTGAAACTGATGAAAATGATGAATGTGCGGGAGACTCCCTAAGGATAAAAGTCAAGTTCGATATACAAAAACCCTTATGCAGGGGAACTAACATAAAGGTAGGATCCATGGCTGAGGAAGTCTGGTACCCGATAACTTACGAGAAACTGCAGGAATTCTGTTATCGGTGTAGCAGACTGGGGCATGTGTATAAGGATTGTAAGGAACAACAAGACAAGCTAGAAGGCGCAACTCGGGAAGTAAGTGTTAGTGGCAAAGGGCGATCTAATTTGCAAAACAGTAGAGGCGTTTACGCAACTCAAGCAAGGAAGAAAGACGAAGAAGACTCTCAAACAGATAAAAATCTCCCTTCATTTTCCGACACTGGTTCCGGCGAGGATGACAACAGTCGTGAGGACGTCAGTACGGAAAAGGAAAAGTTACACGGGGAGAAGGAGTGTGAAAGTACACATAATCATCATAACAGTAGTACTGAAAAGGATTGTCACATCTGTATATCTAGTCAGGGTATGTGGATTAGGTTTGTTGAGGAGGCCACGCTTGTTACCGTTGGGAGGAAAATGGAGGCTATGAATGATGGAGTTTTAGGAAAAGGAATAAAAGGAGAAAAGGTTAACGAACCTATCAAGCCAGACTCAGCAGAGTCTAAGGAGCTTATGTCGAACAAACCTAAAGGGAAATGGCTAAAAACTTGGAAGCGACAAACAAAAACAAAACTGGTTGGAATAAGGAAAATGACATACAAACTCAACCATTATTGGTTAGGAAACACAAAGAAGGGAGGGGGGGGGGGGAAGAGGTCGAACATGGTGTGA

Coding sequence (CDS)

ATGGTTGTCGTCTCTTTTGTGGTTTGGAAATGGGCTAAGGCGATCGGGAACTCCATAGGGACCTTTATGGACGTTGAAACTGATGAAAATGATGAATGTGCGGGAGACTCCCTAAGGATAAAAGTCAAGTTCGATATACAAAAACCCTTATGCAGGGGAACTAACATAAAGGTAGGATCCATGGCTGAGGAAGTCTGGTACCCGATAACTTACGAGAAACTGCAGGAATTCTGTTATCGGTGTAGCAGACTGGGGCATGTGTATAAGGATTGTAAGGAACAACAAGACAAGCTAGAAGGCGCAACTCGGGAAGTAAGTGTTAGTGGCAAAGGGCGATCTAATTTGCAAAACAGTAGAGGCGTTTACGCAACTCAAGCAAGGAAGAAAGACGAAGAAGACTCTCAAACAGATAAAAATCTCCCTTCATTTTCCGACACTGGTTCCGGCGAGGATGACAACAGTCGTGAGGACGTCAGTACGGAAAAGGAAAAGTTACACGGGGAGAAGGAGTGTGAAAGTACACATAATCATCATAACAGTAGTACTGAAAAGGATTGTCACATCTGTATATCTAGTCAGGGTATGTGGATTAGGTTTGTTGAGGAGGCCACGCTTGTTACCGTTGGGAGGAAAATGGAGGCTATGAATGATGGAGTTTTAGGAAAAGGAATAAAAGGAGAAAAGGTTAACGAACCTATCAAGCCAGACTCAGCAGAGTCTAAGGAGCTTATGTCGAACAAACCTAAAGGGAAATGGCTAAAAACTTGGAAGCGACAAACAAAAACAAAACTGGTTGGAATAAGGAAAATGACATACAAACTCAACCATTATTGGTTAGGAAACACAAAGAAGGGAGGGGGGGGGGGGAAGAGGTCGAACATGGTGTGA

Protein sequence

MVVVSFVVWKWAKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYEKLQEFCYRCSRLGHVYKDCKEQQDKLEGATREVSVSGKGRSNLQNSRGVYATQARKKDEEDSQTDKNLPSFSDTGSGEDDNSREDVSTEKEKLHGEKECESTHNHHNSSTEKDCHICISSQGMWIRFVEEATLVTVGRKMEAMNDGVLGKGIKGEKVNEPIKPDSAESKELMSNKPKGKWLKTWKRQTKTKLVGIRKMTYKLNHYWLGNTKKGGGGGKRSNMV
Homology
BLAST of Tan0000653 vs. NCBI nr
Match: CAD6257659.1 (unnamed protein product [Miscanthus lutarioriparius])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-14
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 0

Query: 12  AKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITY 71
           A+AIG+ +G FM+V+ D +D  AG  LR+KV+ DI+KPLCRG    +G    + W PITY
Sbjct: 223 ARAIGDDVGEFMEVDADGSDLAAGRDLRLKVRMDIRKPLCRGILADLGPNKGDRWCPITY 282

Query: 72  EKLQEFCYRCSRLGHVYKDCKEQQDKLEGA 102
           E   +FCY C  +GHV + C ++  K E A
Sbjct: 283 EHFPDFCYICGLIGHVDRACLKKLGKGEKA 312

BLAST of Tan0000653 vs. NCBI nr
Match: BAS74010.1 (Os01g0714300 [Oryza sativa Japonica Group])

HSP 1 Score: 90.5 bits (223), Expect = 2.6e-14
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 0

Query: 13  KAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYE 72
           KAIG+ +GTF++++ DEN    G  LRIK++ DI+KPL RG  + +G   + +W P+ YE
Sbjct: 14  KAIGDEVGTFLEMDMDENCTAVGRFLRIKIRLDIRKPLMRGVTVMIGKEEKALWCPLEYE 73

Query: 73  KLQEFCYRCSRLGHVYKDCKEQQDKLE 100
            L +FCY C  +GH  K C+++  K E
Sbjct: 74  FLPDFCYSCGIIGHTNKICEKEVMKGE 100

BLAST of Tan0000653 vs. NCBI nr
Match: XP_039815069.1 (uncharacterized protein LOC120677956 [Panicum virgatum])

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-14
Identity = 42/94 (44.68%), Postives = 60/94 (63.83%), Query Frame = 0

Query: 13  KAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYE 72
           +AIG  IGTFM ++ DE+D   G  LRIKV+ DI+KPL RG  + VG   + +W P+ YE
Sbjct: 117 EAIGEEIGTFMTMDLDEDDTAVGRYLRIKVRLDIRKPLMRGVMVYVGKEDKPLWCPVEYE 176

Query: 73  KLQEFCYRCSRLGHVYKDCKEQQDKLEGATREVS 107
            L +FCY C  +GH  K C+ + ++  G T++ S
Sbjct: 177 YLPDFCYTCGIIGHTDKVCEVEVER--GETQQFS 208

BLAST of Tan0000653 vs. NCBI nr
Match: CAD6340009.1 (unnamed protein product [Miscanthus lutarioriparius])

HSP 1 Score: 90.1 bits (222), Expect = 3.4e-14
Identity = 53/132 (40.15%), Postives = 71/132 (53.79%), Query Frame = 0

Query: 12  AKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITY 71
           AK IG+ +G FM+VE D     AG SLR+K++ DIQKPL  G    +G+   E W PITY
Sbjct: 96  AKVIGDDVGEFMEVEADRGVVAAGRSLRLKIRLDIQKPLRCGILADLGADKGERWCPITY 155

Query: 72  EKLQEFCYRCSRLGHVYKDCKEQQDKLEGATREVSVSGKGR--------SNLQNSRGVYA 131
           E L +FCY C R+GHV + C ++  K E     V  SG+ R        S     +G   
Sbjct: 156 EHLPDFCYICGRIGHVDRPCSKKLGKDE----PVPFSGELRFVPPRRSFSGKDEGKGSVK 215

Query: 132 TQARKKDEEDSQ 136
               KKD E+++
Sbjct: 216 EVKEKKDREETE 223

BLAST of Tan0000653 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-13
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 0

Query: 12  AKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITY 71
           A  +GN+IG F DVE++ N+ C G  LR++V+FD+ KPL RG  + +       W PI Y
Sbjct: 146 ATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQY 205

Query: 72  EKLQEFCYRCSRLGHVYKDCKE 94
           E+L +F Y C RL H+ KDC +
Sbjct: 206 ERLPDFRYHCGRLDHILKDCSD 227

BLAST of Tan0000653 vs. ExPASy TrEMBL
Match: A0A0P0V7D8 (Os01g0714300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0714300 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-14
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 0

Query: 13  KAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYE 72
           KAIG+ +GTF++++ DEN    G  LRIK++ DI+KPL RG  + +G   + +W P+ YE
Sbjct: 14  KAIGDEVGTFLEMDMDENCTAVGRFLRIKIRLDIRKPLMRGVTVMIGKEEKALWCPLEYE 73

Query: 73  KLQEFCYRCSRLGHVYKDCKEQQDKLE 100
            L +FCY C  +GH  K C+++  K E
Sbjct: 74  FLPDFCYSCGIIGHTNKICEKEVMKGE 100

BLAST of Tan0000653 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.3e-14
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 0

Query: 12  AKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITY 71
           A  +GN+IG F DVE++ N+ C G  LR++V+FD+ KPL RG  + +       W PI Y
Sbjct: 146 ATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDVMKPLHRGIKLNLDGPMGGCWIPIQY 205

Query: 72  EKLQEFCYRCSRLGHVYKDCKE 94
           E+L +F Y C RL H+ KDC +
Sbjct: 206 ERLPDFRYHCGRLDHILKDCSD 227

BLAST of Tan0000653 vs. ExPASy TrEMBL
Match: A0A0A0LNB5 (CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G427330 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.4e-13
Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = 0

Query: 10  KWAKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPI 69
           K+  A+ NSI +F +VE  E     G+ L+++ K D+Q+ L   TNIK+G+MA+E   P+
Sbjct: 32  KYVVALTNSIDSFEEVEESELRRTYGELLKVREKIDVQQSLNHETNIKLGAMAKEKCIPV 91

Query: 70  TYEKLQEFCYRCSRLGHVYKDCKEQQDKLEG 101
           TYEKL +FCY C  LGHV ++C   + K+EG
Sbjct: 92  TYEKLSDFCYNCGILGHVLQEC---EVKVEG 119

BLAST of Tan0000653 vs. ExPASy TrEMBL
Match: A0A2T7EQ43 (CCHC-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G170400 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-13
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 0

Query: 13  KAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITYE 72
           K+IG+ +G FM +E ++++   G  L IK K DI+KPL RG  + VG   + +W P+ YE
Sbjct: 80  KSIGSEVGEFMAMELEDDETAIGQFLHIKAKLDIRKPLIRGPTLHVGDDEKPIWCPLVYE 139

Query: 73  KLQEFCYRCSRLGHVYKDCK 93
            L +FCY C R+GH+ K C+
Sbjct: 140 FLPDFCYTCGRIGHLDKCCE 159

BLAST of Tan0000653 vs. ExPASy TrEMBL
Match: A0A803Q6Y1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-13
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 0

Query: 12  AKAIGNSIGTFMDVETDENDECAGDSLRIKVKFDIQKPLCRGTNIKVGSMAEEVWYPITY 71
           AKA+GN IG FM+V TD  +E  G  LRI+VK D+ KPL RG NI++  + ++ W    Y
Sbjct: 136 AKALGNIIGEFMEVFTDSLNEGWGPFLRIRVKIDVTKPLRRGRNIRLQQIRDKFWVDFRY 195

Query: 72  EKLQEFCYRCSRLGHVYKDC 92
           E+L E+C  C  LGH Y+ C
Sbjct: 196 ERLPEWCMECGCLGHPYQKC 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
CAD6257659.11.2e-1446.67unnamed protein product [Miscanthus lutarioriparius][more]
BAS74010.12.6e-1443.68Os01g0714300 [Oryza sativa Japonica Group][more]
XP_039815069.13.4e-1444.68uncharacterized protein LOC120677956 [Panicum virgatum][more]
CAD6340009.13.4e-1440.15unnamed protein product [Miscanthus lutarioriparius][more]
XP_022132681.11.3e-1345.12uncharacterized protein LOC111005481 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A0P0V7D81.3e-1443.68Os01g0714300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0714300 PE... [more]
A0A6J1BSZ16.3e-1445.12uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A0A0LNB52.4e-1345.05CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G427330 P... [more]
A0A2T7EQ433.1e-1343.75CCHC-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=... [more]
A0A803Q6Y13.1e-1348.75Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 44..92
e-value: 8.5E-12
score: 44.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..183
NoneNo IPR availablePANTHERPTHR31286:SF84SUBFAMILY NOT NAMEDcoord: 3..138
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 3..138
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 78..93
score: 9.71865
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 75..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0000653.1Tan0000653.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding