Tan0000579 (gene) Snake gourd v1

Overview


Name	Tan0000579
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein BIC1-like
Location	LG08: 68999669 .. 69000689 (-)
RNA-Seq Expression	Tan0000579
Synteny	Tan0000579

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCATTTCATTTTCCCTCAAATTCCCATATCCCAATCAAAACCAAAACCACAAATCTTTCCAACTACAAATCCGCGTCTCCAATTTCTCCATCTGGATTCTCTCTTTTTCATTCTTTCATTTCGACTTCACTGTTCAATTCATCTCATTGATTCATTAATCGCCAAATTCATTTTTCATGGCCGACGGAGCTTTCGTCTAGGGTTTCGCTGCATGAGGAGAGAGGTTTGACCTAGTTTGCGGAAGATGGAATCTCACGGCGCTGGTTCTTTTCTTCATCGATACTCTGTTTCCGTTCCTCCGCCGCCGTTGACGGCTGAGAAAGCTCCTTTGGCGGAAGAGAAAATCGGAATCGAACAGGAACTGCAATGTCTGGTTTCGAGTTTCGGCGGAGGAAAACGCTCGGAATCGGAAGTGCAGGAGGACGACGGAGCGCTAATGGAGGTCGCGACGGTGGAGGAAATGCAAGAACCGACGACCTCCGAGGCGGTGACGACGGCGGAGGTGGTGGAGGAAGATGGACGGGAGAGACTGAAGAGGCACCGGCGGGAGATGGCCGGCAGAGTCTGGATACCGGAGATATGGGGGCAAGAGGAGCTTCTGAAGGATTGGATTGATTGCTCCGCCTTCGACGCTTGTTTATTTCCGACTGGAATCGTGTCGGCGAGGGCAGCGCTGGTTGAAGAAGGAAGGAGGGCCAACAATGGCGGATTCAGACTGGAGAACAGGTGCTGATTTTTCAGATAATTATTTTAGGGTGGGATAAATTAATCGCAATAAAAAAAGAAAAAAAAAACAAAGAAATCCTTTTCCCATGCTCTGAAATTAGTTTCCAACATCTGGGGGAGAGGATTTTGAATGGAAACAATTAAACAAAATAATGCTTCTTTTTTTTTTTTTTTTTGTCTATGGCTTTTCTTTCATTGGCCATTTGATTTTCCATTATTGTTAATTAATACAATTATGAATTCTCCATGCTACTTTTGATACTATTATTGTTGGTTATTATTATTTCGATTAA

mRNA sequence

TCTCATTTCATTTTCCCTCAAATTCCCATATCCCAATCAAAACCAAAACCACAAATCTTTCCAACTACAAATCCGCGTCTCCAATTTCTCCATCTGGATTCTCTCTTTTTCATTCTTTCATTTCGACTTCACTGTTCAATTCATCTCATTGATTCATTAATCGCCAAATTCATTTTTCATGGCCGACGGAGCTTTCGTCTAGGGTTTCGCTGCATGAGGAGAGAGGTTTGACCTAGTTTGCGGAAGATGGAATCTCACGGCGCTGGTTCTTTTCTTCATCGATACTCTGTTTCCGTTCCTCCGCCGCCGTTGACGGCTGAGAAAGCTCCTTTGGCGGAAGAGAAAATCGGAATCGAACAGGAACTGCAATGTCTGGTTTCGAGTTTCGGCGGAGGAAAACGCTCGGAATCGGAAGTGCAGGAGGACGACGGAGCGCTAATGGAGGTCGCGACGGTGGAGGAAATGCAAGAACCGACGACCTCCGAGGCGGTGACGACGGCGGAGGTGGTGGAGGAAGATGGACGGGAGAGACTGAAGAGGCACCGGCGGGAGATGGCCGGCAGAGTCTGGATACCGGAGATATGGGGGCAAGAGGAGCTTCTGAAGGATTGGATTGATTGCTCCGCCTTCGACGCTTGTTTATTTCCGACTGGAATCGTGTCGGCGAGGGCAGCGCTGGTTGAAGAAGGAAGGAGGGCCAACAATGGCGGATTCAGACTGGAGAACAGGTGCTGATTTTTCAGATAATTATTTTAGGGTGGGATAAATTAATCGCAATAAAAAAAGAAAAAAAAAACAAAGAAATCCTTTTCCCATGCTCTGAAATTAGTTTCCAACATCTGGGGGAGAGGATTTTGAATGGAAACAATTAAACAAAATAATGCTTCTTTTTTTTTTTTTTTTTGTCTATGGCTTTTCTTTCATTGGCCATTTGATTTTCCATTATTGTTAATTAATACAATTATGAATTCTCCATGCTACTTTTGATACTATTATTGTTGGTTATTATTATTTCGATTAA

Coding sequence (CDS)

ATGGAATCTCACGGCGCTGGTTCTTTTCTTCATCGATACTCTGTTTCCGTTCCTCCGCCGCCGTTGACGGCTGAGAAAGCTCCTTTGGCGGAAGAGAAAATCGGAATCGAACAGGAACTGCAATGTCTGGTTTCGAGTTTCGGCGGAGGAAAACGCTCGGAATCGGAAGTGCAGGAGGACGACGGAGCGCTAATGGAGGTCGCGACGGTGGAGGAAATGCAAGAACCGACGACCTCCGAGGCGGTGACGACGGCGGAGGTGGTGGAGGAAGATGGACGGGAGAGACTGAAGAGGCACCGGCGGGAGATGGCCGGCAGAGTCTGGATACCGGAGATATGGGGGCAAGAGGAGCTTCTGAAGGATTGGATTGATTGCTCCGCCTTCGACGCTTGTTTATTTCCGACTGGAATCGTGTCGGCGAGGGCAGCGCTGGTTGAAGAAGGAAGGAGGGCCAACAATGGCGGATTCAGACTGGAGAACAGGTGCTGA

Protein sequence

MESHGAGSFLHRYSVSVPPPPLTAEKAPLAEEKIGIEQELQCLVSSFGGGKRSESEVQEDDGALMEVATVEEMQEPTTSEAVTTAEVVEEDGRERLKRHRREMAGRVWIPEIWGQEELLKDWIDCSAFDACLFPTGIVSARAALVEEGRRANNGGFRLENRC

Homology

[Close]

BLAST of Tan0000579 vs. ExPASy Swiss-Prot
Match: Q9LXJ1 (Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.9e-26
Identity = 55/73 (75.34%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 90  EDGRERLKRHRREMAGRVWIPEIWGQEELLKDWIDCSAFDACLFPTGIVSARAALVEEGR 149
           + GRERLK+HRRE+AGRVWIPEIWGQEELLKDWIDCS FD CL P GI SAR ALVEE R
Sbjct: 64  DTGRERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEAR 123

Query: 150 RANNGGFRLENRC 163
           RA +    L NRC
Sbjct: 124 RAASASGGLHNRC 136

[Close]

BLAST of Tan0000579 vs. ExPASy Swiss-Prot
Match: Q9M280 (Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-11
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 92  GRERLKRHRREMAGRVWIPEIWGQEELLKDWIDCSAFDACLFPTGIVSARAALVEE---- 151
           GR+RLKRHR E+AG+V IP+ WG+E LL  W+D S FDA    + IVSARAAL+ +    
Sbjct: 40  GRDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALMADSGDD 99

Query: 152 --GRRANNGGFRLENRC 163
              R +     R+E+ C
Sbjct: 100 AGARGSRPQRLRVESSC 116

[Close]

BLAST of Tan0000579 vs. NCBI nr
Match: XP_022983147.1 (protein BIC1-like [Cucurbita maxima])

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-51
Identity = 111/162 (68.52%), Postives = 122/162 (75.31%), Query Frame = 0


Query: 1   MESHGAGSFLHRYSVSVPPPPLTAEKAPLAEEKIGIEQELQCLVSSFGGGKRSESEVQED 60
           M+  GAGS LH+YS+S PPPP          +  GIEQEL+CLVSSFGGGKRSES+V+ED
Sbjct: 12  MDFQGAGSCLHQYSLSPPPPP---------AQNGGIEQELRCLVSSFGGGKRSESDVKED 71

Query: 61  DGALMEVATVEEMQEPTTSEAVTTAEVVEEDGRERLKRHRREMAGRVWIPEIWGQEELLK 120
           DG  +EV   E             +E  EE GRERLKRHRRE+AGRVWIPEIWGQEELLK
Sbjct: 72  DGVPVEVPAAE-----------AASEEEEEGGRERLKRHRREVAGRVWIPEIWGQEELLK 131

Query: 121 DWIDCSAFDACLFPTGIVSARAALVEEGRRANNGGFRLENRC 163
           DWIDC AFDACLFPTGI SARAAL+EEGRRANNGGFR ENRC
Sbjct: 132 DWIDCFAFDACLFPTGIGSARAALIEEGRRANNGGFRPENRC 153

[Close]

BLAST of Tan0000579 vs. NCBI nr
Match: XP_023528325.1 (protein BIC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.8 bits (530), Expect = 3.6e-50
Identity = 110/162 (67.90%), Postives = 119/162 (73.46%), Query Frame = 0


Query: 1   MESHGAGSFLHRYSVSVPPPPLTAEKAPLAEEKIGIEQELQCLVSSFGGGKRSESEVQED 60
           M+  GAGS LH+YS+S PPPP             GIEQEL+CLVSSF GGKRSES+V+ED
Sbjct: 12  MDFQGAGSCLHQYSLSPPPPP---------ARNGGIEQELRCLVSSFRGGKRSESDVKED 71

Query: 61  DGALMEVATVEEMQEPTTSEAVTTAEVVEEDGRERLKRHRREMAGRVWIPEIWGQEELLK 120
           DG  +EV             A   AE  EE GRERLKRHR E+AGRVWIPEIWGQEELLK
Sbjct: 72  DGVAVEVPA-----------AAAAAEEEEEGGRERLKRHRGEVAGRVWIPEIWGQEELLK 131

Query: 121 DWIDCSAFDACLFPTGIVSARAALVEEGRRANNGGFRLENRC 163
           DWIDC AFDACLFPTGI SARAAL+EEGRRANNGGFR ENRC
Sbjct: 132 DWIDCFAFDACLFPTGIGSARAALIEEGRRANNGGFRPENRC 153

[Close]

BLAST of Tan0000579 vs. NCBI nr
Match: XP_038903496.1 (protein BIC1 [Benincasa hispida])

HSP 1 Score: 208.0 bits (528), Expect = 6.1e-50
Identity = 117/167 (70.06%), Postives = 126/167 (75.45%), Query Frame = 0


Query: 1   MESHGAGSFLHRYSVSVPPPPLTAEKAPLAEEKIGIEQELQCLVSSFGGG----KRSESE 60
           M+ HGAGS LH+Y   +PPPP  A KAP A +K GIEQEL  LVS   GG    KR ES+
Sbjct: 12  MDFHGAGSCLHQY--PLPPPPFEAVKAPPA-QKNGIEQELHSLVSCSSGGRDGEKRLESD 71

Query: 61  VQEDDGALMEVATVEEMQEPTTSEAVTTAEVVEED-GRERLKRHRREMAGRVWIPEIWGQ 120
           VQE+DGA MEVA          + AVT  +  EE+ GRERLKRHRREMAGRVWIPEIWGQ
Sbjct: 72  VQEEDGAAMEVA----------ATAVTAPKKEEEEGGRERLKRHRREMAGRVWIPEIWGQ 131

Query: 121 EELLKDWIDCSAFDACLFPTGIVSARAALVEEGRRANNGGFRLENRC 163
           EELLKDWIDCSAFDACLFPTGI SARAALVEEGRRANNGG  LENRC
Sbjct: 132 EELLKDWIDCSAFDACLFPTGIGSARAALVEEGRRANNGGLTLENRC 165

[Close]

BLAST of Tan0000579 vs. NCBI nr
Match: XP_022927272.1 (protein BIC1-like [Cucurbita moschata])

HSP 1 Score: 203.4 bits (516), Expect = 1.5e-48
Identity = 115/162 (70.99%), Postives = 121/162 (74.69%), Query Frame = 0


Query: 1   MESHGAGSFLHRYSVSVPPPPLTAEKAPLAEEKIGIEQELQCLVSSFGGGKRSESEVQED 60
           MESH   SFL       PPPPLTAEKAP+  EKIGIEQEL+ L S     KRSESEVQ  
Sbjct: 1   MESHRPDSFL------PPPPPLTAEKAPVPAEKIGIEQELESLASR----KRSESEVQ-- 60

Query: 61  DGALMEVATVEEMQEPTTSEAVTTAEVVEEDGRERLKRHRREMAGRVWIPEIWGQEELLK 120
                EVA  +EMQ  TT+ A    E  EE GRERLKRHRREMAGRVWIP+IWGQEELLK
Sbjct: 61  -----EVAAGKEMQVQTTTTAAEEEE--EEGGRERLKRHRREMAGRVWIPDIWGQEELLK 120

Query: 121 DWIDCSAFDACLFPTGIVSARAALVEEGRRANNGGFRLENRC 163
           +WIDCS FDACLFPTGI  ARAALVEEGRRANNGGFRLENRC
Sbjct: 121 EWIDCSGFDACLFPTGIGLARAALVEEGRRANNGGFRLENRC 143

[Close]

BLAST of Tan0000579 vs. NCBI nr
Match: KAG7028105.1 (Protein BIC1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 202.2 bits (513), Expect = 3.4e-48
Identity = 114/162 (70.37%), Postives = 121/162 (74.69%), Query Frame = 0


Query: 1   MESHGAGSFLHRYSVSVPPPPLTAEKAPLAEEKIGIEQELQCLVSSFGGGKRSESEVQED 60
           MESH   SFL       PPPPLTAEKAP+  EKIGIEQEL+ L S     KRSESEVQ  
Sbjct: 1   MESHRPDSFL------PPPPPLTAEKAPVPAEKIGIEQELESLASR----KRSESEVQ-- 60

Query: 61  DGALMEVATVEEMQEPTTSEAVTTAEVVEEDGRERLKRHRREMAGRVWIPEIWGQEELLK 120
                EVA  +EMQ  TT+ A    E  EE GRERLKRHRREMAGRVWIP+IWGQEELLK
Sbjct: 61  -----EVAAGKEMQVQTTTTAAEEEE--EEGGRERLKRHRREMAGRVWIPDIWGQEELLK 120

Query: 121 DWIDCSAFDACLFPTGIVSARAALVEEGRRANNGGFRLENRC 163
           +WIDCS FDACLFPTGI  ARAALVEEGRRANNGGFR+ENRC
Sbjct: 121 EWIDCSGFDACLFPTGIGLARAALVEEGRRANNGGFRVENRC 143

[Close]

BLAST of Tan0000579 vs. ExPASy TrEMBL
Match: A0A6J1IYG7 (protein BIC1-like OS=Cucurbita maxima OX=3661 GN=LOC111481785 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 7.1e-52
Identity = 111/162 (68.52%), Postives = 122/162 (75.31%), Query Frame = 0


Query: 1   MESHGAGSFLHRYSVSVPPPPLTAEKAPLAEEKIGIEQELQCLVSSFGGGKRSESEVQED 60
           M+  GAGS LH+YS+S PPPP          +  GIEQEL+CLVSSFGGGKRSES+V+ED
Sbjct: 12  MDFQGAGSCLHQYSLSPPPPP---------AQNGGIEQELRCLVSSFGGGKRSESDVKED 71

Query: 61  DGALMEVATVEEMQEPTTSEAVTTAEVVEEDGRERLKRHRREMAGRVWIPEIWGQEELLK 120
           DG  +EV   E             +E  EE GRERLKRHRRE+AGRVWIPEIWGQEELLK
Sbjct: 72  DGVPVEVPAAE-----------AASEEEEEGGRERLKRHRREVAGRVWIPEIWGQEELLK 131

Query: 121 DWIDCSAFDACLFPTGIVSARAALVEEGRRANNGGFRLENRC 163
           DWIDC AFDACLFPTGI SARAAL+EEGRRANNGGFR ENRC
Sbjct: 132 DWIDCFAFDACLFPTGIGSARAALIEEGRRANNGGFRPENRC 153

[Close]

BLAST of Tan0000579 vs. ExPASy TrEMBL
Match: A0A6J1EGP6 (protein BIC1-like OS=Cucurbita moschata OX=3662 GN=LOC111434141 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 7.3e-49
Identity = 115/162 (70.99%), Postives = 121/162 (74.69%), Query Frame = 0


Query: 1   MESHGAGSFLHRYSVSVPPPPLTAEKAPLAEEKIGIEQELQCLVSSFGGGKRSESEVQED 60
           MESH   SFL       PPPPLTAEKAP+  EKIGIEQEL+ L S     KRSESEVQ  
Sbjct: 1   MESHRPDSFL------PPPPPLTAEKAPVPAEKIGIEQELESLASR----KRSESEVQ-- 60

Query: 61  DGALMEVATVEEMQEPTTSEAVTTAEVVEEDGRERLKRHRREMAGRVWIPEIWGQEELLK 120
                EVA  +EMQ  TT+ A    E  EE GRERLKRHRREMAGRVWIP+IWGQEELLK
Sbjct: 61  -----EVAAGKEMQVQTTTTAAEEEE--EEGGRERLKRHRREMAGRVWIPDIWGQEELLK 120

Query: 121 DWIDCSAFDACLFPTGIVSARAALVEEGRRANNGGFRLENRC 163
           +WIDCS FDACLFPTGI  ARAALVEEGRRANNGGFRLENRC
Sbjct: 121 EWIDCSGFDACLFPTGIGLARAALVEEGRRANNGGFRLENRC 143

[Close]

BLAST of Tan0000579 vs. ExPASy TrEMBL
Match: A0A6J1KWF3 (protein BIC1-like OS=Cucurbita maxima OX=3661 GN=LOC111498803 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.1e-48
Identity = 113/163 (69.33%), Postives = 121/163 (74.23%), Query Frame = 0


Query: 1   MESHGAGSFLHRYSVSVPPPPLTAEKAPLAEEKIGIEQELQCLVSSFGGGKRSESEVQED 60
           MESH   SFL       PPPPLTA+KAP+  EKIGIEQEL+ L S     KRSESEVQ  
Sbjct: 1   MESHRPDSFL------PPPPPLTAQKAPVPAEKIGIEQELESLASK----KRSESEVQ-- 60

Query: 61  DGALMEVATVEEMQ-EPTTSEAVTTAEVVEEDGRERLKRHRREMAGRVWIPEIWGQEELL 120
                EVA  +EMQ + TT+ A    E  EE GRERLKRHRREM GRVWIP+IWGQEELL
Sbjct: 61  -----EVAAGKEMQVQTTTAAAAAEEEEEEEGGRERLKRHRREMGGRVWIPDIWGQEELL 120

Query: 121 KDWIDCSAFDACLFPTGIVSARAALVEEGRRANNGGFRLENRC 163
           K+WIDCS FDACLFPTGI  ARAALVEEGRRANNGGFRLENRC
Sbjct: 121 KEWIDCSGFDACLFPTGIGLARAALVEEGRRANNGGFRLENRC 146

[Close]

BLAST of Tan0000579 vs. ExPASy TrEMBL
Match: A0A6J1F7F9 (protein BIC1-like OS=Cucurbita moschata OX=3662 GN=LOC111441546 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.6e-48
Identity = 108/162 (66.67%), Postives = 118/162 (72.84%), Query Frame = 0


Query: 1   MESHGAGSFLHRYSVSVPPPPLTAEKAPLAEEKIGIEQELQCLVSSFGGGKRSESEVQED 60
           M+  GAGS L +YS+S PPP              GIEQEL+CLVSSFGGGKRSES+V+ED
Sbjct: 12  MDFQGAGSCL-QYSLSPPPPARNG----------GIEQELRCLVSSFGGGKRSESDVKED 71

Query: 61  DGALMEVATVEEMQEPTTSEAVTTAEVVEEDGRERLKRHRREMAGRVWIPEIWGQEELLK 120
           DG  +EV      +E             EE GRERLKRHRRE+AGRVWIPEIWGQEELLK
Sbjct: 72  DGVAVEVPAAAASEE-------------EEGGRERLKRHRREVAGRVWIPEIWGQEELLK 131

Query: 121 DWIDCSAFDACLFPTGIVSARAALVEEGRRANNGGFRLENRC 163
           DWIDC AFDACLFPTGI SARAAL+EEGRRANNGGFR ENRC
Sbjct: 132 DWIDCFAFDACLFPTGIGSARAALIEEGRRANNGGFRPENRC 149

[Close]

BLAST of Tan0000579 vs. ExPASy TrEMBL
Match: A0A5A7TR64 (Protein BIC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003850 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.8e-47
Identity = 114/167 (68.26%), Postives = 122/167 (73.05%), Query Frame = 0


Query: 1   MESHGAGSFLHRYSVSVPPPPLTAEKAPLAEEKIGIEQELQCLVSSFG----GGKRSESE 60
           M+ H  GS LH+Y  S+PPPP  A +AP   +K G EQEL  LV+S G    G K  ES+
Sbjct: 1   MDVHVTGSCLHQY--SLPPPPFEAVEAP-PPQKEGTEQELDSLVTSLGGCRDGEKGLESD 60

Query: 61  VQEDDGALMEV-ATVEEMQEPTTSEAVTTAEVVEEDGRERLKRHRREMAGRVWIPEIWGQ 120
           VQEDDGA MEV ATV E +E    E        EE GRERLKRHRREMAGRVWIPEIWGQ
Sbjct: 61  VQEDDGAEMEVAATVSEKKEEEKEE--------EEGGRERLKRHRREMAGRVWIPEIWGQ 120

Query: 121 EELLKDWIDCSAFDACLFPTGIVSARAALVEEGRRANNGGFRLENRC 163
           EELLKDWIDCSAFDACLFPTGI SARAALVEE RRANNGG  LENRC
Sbjct: 121 EELLKDWIDCSAFDACLFPTGIGSARAALVEERRRANNGGLTLENRC 156

[Close]

BLAST of Tan0000579 vs. TAIR 10
Match: AT3G52740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-27
Identity = 55/73 (75.34%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 90  EDGRERLKRHRREMAGRVWIPEIWGQEELLKDWIDCSAFDACLFPTGIVSARAALVEEGR 149
           + GRERLK+HRRE+AGRVWIPEIWGQEELLKDWIDCS FD CL P GI SAR ALVEE R
Sbjct: 64  DTGRERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEAR 123

Query: 150 RANNGGFRLENRC 163
           RA +    L NRC
Sbjct: 124 RAASASGGLHNRC 136

[Close]

BLAST of Tan0000579 vs. TAIR 10
Match: AT3G44450.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52740.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 92  GRERLKRHRREMAGRVWIPEIWGQEELLKDWIDCSAFDACLFPTGIVSARAALVEE---- 151
           GR+RLKRHR E+AG+V IP+ WG+E LL  W+D S FDA    + IVSARAAL+ +    
Sbjct: 40  GRDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALMADSGDD 99

Query: 152 --GRRANNGGFRLENRC 163
              R +     R+E+ C
Sbjct: 100 AGARGSRPQRLRVESSC 116

The following BLAST results are available for this feature:

BLAST of Tan0000579 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXJ1	2.9e-26	75.34	Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1	[more]
Q9M280	2.0e-11	48.05	Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1	[more]

BLAST of Tan0000579 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983147.1	1.5e-51	68.52	protein BIC1-like [Cucurbita maxima]	[more]
XP_023528325.1	3.6e-50	67.90	protein BIC1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038903496.1	6.1e-50	70.06	protein BIC1 [Benincasa hispida]	[more]
XP_022927272.1	1.5e-48	70.99	protein BIC1-like [Cucurbita moschata]	[more]
KAG7028105.1	3.4e-48	70.37	Protein BIC1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Tan0000579 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IYG7	7.1e-52	68.52	protein BIC1-like OS=Cucurbita maxima OX=3661 GN=LOC111481785 PE=4 SV=1	[more]
A0A6J1EGP6	7.3e-49	70.99	protein BIC1-like OS=Cucurbita moschata OX=3662 GN=LOC111434141 PE=4 SV=1	[more]
A0A6J1KWF3	2.1e-48	69.33	protein BIC1-like OS=Cucurbita maxima OX=3661 GN=LOC111498803 PE=4 SV=1	[more]
A0A6J1F7F9	3.6e-48	66.67	protein BIC1-like OS=Cucurbita moschata OX=3662 GN=LOC111441546 PE=4 SV=1	[more]
A0A5A7TR64	1.8e-47	68.26	Protein BIC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00...	[more]

BLAST of Tan0000579 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52740.1	2.1e-27	75.34	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G44450.1	1.4e-12	48.05	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR34207:SF2	PROTEIN BIC1	coord: 62..162
IPR040374	Protein BIC	PANTHER	PTHR34207	PROTEIN BIC1	coord: 62..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000579.1	Tan0000579.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009785	blue light signaling pathway