Tan0000565 (gene) Snake gourd v1

Overview


Name	Tan0000565
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Protein EXPORTIN 1A
Location	LG09: 54188279 .. 54189065 (+)
RNA-Seq Expression	Tan0000565
Synteny	Tan0000565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGGGGATTAGCAACACCTCGGTTTCATTTTTTTCTTTTCTTTCTATTTAAGAACCGGTGGGGCAACGCCGAAGAACTGGAGAAGAAGGATGAAGAAGACGAAGTCGGAGAACTGGAGTGGAGTCTTGGATTGGAGAAGTTGAAGAGAAGAAATGAAAGGGAAATGGGGAAGAACCAAGAAGACAAGCGACTAAGGGTTTATTTTTACAATTTTTGGGCTTCTGTGTGCAATATTTACACTTATTATAGTTAAAATATTATTATTATAATTATTAATTATTACATATCCTATAACAGTATAATTAAATAATAACAGTCAGTCGATTTTTGGGATTTTAAGCCCCCACCAACCAACCAAAAGGTCGGTTTTGCTCGCACAGTCAAGACAACGATGAGTTCTCTGCCCCTGTGGGGATGGAGTGACAGAAATTTTGAAAATTTCATAGATTCAAGTCCTTAAACGTATTGTGCCCTCTTTTCTGGTACCCTTACTTCAAAACATTTAGTTTTCAAGGGGGAAACATATGTTAGTAACCTTGTTAAAATTCTTAGAAGGAACTGCGTAGAATGCATTACACAGAACTTCTTTTTTATTACAGTCAACATAATGAAATCGAGGTGTTGCCCTTTTTTATTTGTTTGTTGTAATATATTTTGCTTCTAATTTTTAGGTTGGAGAAAATGAGCCATTCATTTCTGAACTTCTTTCTAGTCTTCCAACAACAGTGGCAGATCTTGAGCCTCATCAAATTCATACTTTTTATGAATCTGTATGTCTATAG

mRNA sequence

ATGGATGGGGGATTAGCAACACCTCGGTTTCATTTTTTTCTTTTCTTTCTATTTAAGAACCGGTGGGGCAACGCCGAAGAACTGGAGAAGAAGGATGAAGAAGACGAAGTCGGAGAACTGGAGTGGAGTCTTGGATTGGAGAAGTTGAAGAGAAGAAATGAAAGGGAAATGGGGAAGAACCAAGAAGACAAGCGACTAAGGGTTGGAGAAAATGAGCCATTCATTTCTGAACTTCTTTCTAGTCTTCCAACAACAGTGGCAGATCTTGAGCCTCATCAAATTCATACTTTTTATGAATCTGTATGTCTATAG

Coding sequence (CDS)

ATGGATGGGGGATTAGCAACACCTCGGTTTCATTTTTTTCTTTTCTTTCTATTTAAGAACCGGTGGGGCAACGCCGAAGAACTGGAGAAGAAGGATGAAGAAGACGAAGTCGGAGAACTGGAGTGGAGTCTTGGATTGGAGAAGTTGAAGAGAAGAAATGAAAGGGAAATGGGGAAGAACCAAGAAGACAAGCGACTAAGGGTTGGAGAAAATGAGCCATTCATTTCTGAACTTCTTTCTAGTCTTCCAACAACAGTGGCAGATCTTGAGCCTCATCAAATTCATACTTTTTATGAATCTGTATGTCTATAG

Protein sequence

MDGGLATPRFHFFLFFLFKNRWGNAEELEKKDEEDEVGELEWSLGLEKLKRRNEREMGKNQEDKRLRVGENEPFISELLSSLPTTVADLEPHQIHTFYESVCL

Homology

[Close]

BLAST of Tan0000565 vs. ExPASy Swiss-Prot
Match: Q9SMV6 (Protein EXPORTIN 1A OS=Arabidopsis thaliana OX=3702 GN=XPO1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-09
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV 102
           ++VGENEPF+SELL+ L TTV DLEPHQIH+FYESV
Sbjct: 605 VQVGENEPFVSELLTGLATTVQDLEPHQIHSFYESV 640

[Close]

BLAST of Tan0000565 vs. ExPASy Swiss-Prot
Match: F4IZR5 (Protein EXPORTIN 1B OS=Arabidopsis thaliana OX=3702 GN=XPO1B PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-08
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV 102
           ++VGE+EPF+SELLS L T V DL+PHQIHTFYESV
Sbjct: 606 VQVGESEPFVSELLSGLATIVGDLQPHQIHTFYESV 641

[Close]

BLAST of Tan0000565 vs. ExPASy Swiss-Prot
Match: Q54EV7 (Exportin-1 OS=Dictyostelium discoideum OX=44689 GN=xpo1 PE=3 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 1.8e-05
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV 102
           L+V E++PFI+ELL+ L TT+A LE  QIHTFYE+V
Sbjct: 593 LQVEESQPFINELLNQLSTTIAHLEQSQIHTFYEAV 628

[Close]

BLAST of Tan0000565 vs. ExPASy Swiss-Prot
Match: O14980 (Exportin-1 OS=Homo sapiens OX=9606 GN=XPO1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.8e-05
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 65  RLRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV 102
           +++VGE  PFI E+L+++ T + DL+P Q+HTFYE+V
Sbjct: 601 QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAV 637

[Close]

BLAST of Tan0000565 vs. ExPASy Swiss-Prot
Match: Q6P5F9 (Exportin-1 OS=Mus musculus OX=10090 GN=Xpo1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.8e-05
Identity = 19/37 (51.35%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 65  RLRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV 102
           +++VGE  PFI E+L+++ T + DL+P Q+HTFYE+V
Sbjct: 601 QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAV 637

[Close]

BLAST of Tan0000565 vs. NCBI nr
Match: KAE9464667.1 (hypothetical protein C3L33_03460, partial [Rhododendron williamsianum])

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-09
Identity = 31/37 (83.78%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESVC 103
           ++VGENEPF+SELL+SLPTT+ADLEPHQIH+FYESVC
Sbjct: 633 VQVGENEPFVSELLTSLPTTIADLEPHQIHSFYESVC 669

[Close]

BLAST of Tan0000565 vs. NCBI nr
Match: KAF5725608.1 (protein EXPORTIN 1A [Tripterygium wilfordii])

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-09
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV 102
           L+VGE+EPFISELLSSLPTTVADLEPHQIHTFYESV
Sbjct: 551 LQVGESEPFISELLSSLPTTVADLEPHQIHTFYESV 586

[Close]

BLAST of Tan0000565 vs. NCBI nr
Match: XP_038696434.1 (protein EXPORTIN 1A-like [Tripterygium wilfordii])

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-09
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV 102
           L+VGE+EPFISELLSSLPTTVADLEPHQIHTFYESV
Sbjct: 608 LQVGESEPFISELLSSLPTTVADLEPHQIHTFYESV 643

[Close]

BLAST of Tan0000565 vs. NCBI nr
Match: XP_023535095.1 (protein EXPORTIN 1A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023535105.1 protein EXPORTIN 1A isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 71.2 bits (173), Expect = 5.7e-09
Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV 102
           ++VGENEPF+SELL+SLPTTVADLEPHQIHTFYESV
Sbjct: 448 VQVGENEPFVSELLTSLPTTVADLEPHQIHTFYESV 483

[Close]

BLAST of Tan0000565 vs. NCBI nr
Match: XP_022966430.1 (protein EXPORTIN 1A [Cucurbita maxima] >XP_022966503.1 protein EXPORTIN 1A [Cucurbita maxima])

HSP 1 Score: 71.2 bits (173), Expect = 5.7e-09
Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV 102
           ++VGENEPF+SELL+SLPTTVADLEPHQIHTFYESV
Sbjct: 606 VQVGENEPFVSELLTSLPTTVADLEPHQIHTFYESV 641

[Close]

BLAST of Tan0000565 vs. ExPASy TrEMBL
Match: A0A6A4MDT3 (Importin N-terminal domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_03460 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.5e-10
Identity = 31/37 (83.78%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESVC 103
           ++VGENEPF+SELL+SLPTT+ADLEPHQIH+FYESVC
Sbjct: 633 VQVGENEPFVSELLTSLPTTIADLEPHQIHSFYESVC 669

[Close]

BLAST of Tan0000565 vs. ExPASy TrEMBL
Match: A0A6N2N5U9 (Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS403906 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 32/37 (86.49%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESVC 103
           ++VGE+EPF+SELLS LPTTVADLEPHQIHTFYESVC
Sbjct: 107 VQVGESEPFVSELLSGLPTTVADLEPHQIHTFYESVC 143

[Close]

BLAST of Tan0000565 vs. ExPASy TrEMBL
Match: A0A7J7BUU8 (Protein EXPORTIN 1A OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G00333 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-09
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV 102
           L+VGE+EPFISELLSSLPTTVADLEPHQIHTFYESV
Sbjct: 551 LQVGESEPFISELLSSLPTTVADLEPHQIHTFYESV 586

[Close]

BLAST of Tan0000565 vs. ExPASy TrEMBL
Match: A0A6J1HRL8 (protein EXPORTIN 1A OS=Cucurbita maxima OX=3661 GN=LOC111466054 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.8e-09
Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV 102
           ++VGENEPF+SELL+SLPTTVADLEPHQIHTFYESV
Sbjct: 606 VQVGENEPFVSELLTSLPTTVADLEPHQIHTFYESV 641

[Close]

BLAST of Tan0000565 vs. ExPASy TrEMBL
Match: A0A6J1CGI1 (protein EXPORTIN 1A OS=Momordica charantia OX=3673 GN=LOC111011464 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.8e-09
Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV 102
           ++VGENEPF+SELL+SLPTTVADLEPHQIHTFYESV
Sbjct: 606 VQVGENEPFVSELLTSLPTTVADLEPHQIHTFYESV 641

[Close]

BLAST of Tan0000565 vs. TAIR 10
Match: AT5G17020.1 (exportin 1A )

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV 102
           ++VGENEPF+SELL+ L TTV DLEPHQIH+FYESV
Sbjct: 605 VQVGENEPFVSELLTGLATTVQDLEPHQIHSFYESV 640

[Close]

BLAST of Tan0000565 vs. TAIR 10
Match: AT5G17020.2 (exportin 1A )

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV 102
           ++VGENEPF+SELL+ L TTV DLEPHQIH+FYESV
Sbjct: 590 VQVGENEPFVSELLTGLATTVQDLEPHQIHSFYESV 625

[Close]

BLAST of Tan0000565 vs. TAIR 10
Match: AT3G03110.1 (exportin 1B )

HSP 1 Score: 60.8 bits (146), Expect = 7.2e-10
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 66  LRVGENEPFISELLSSLPTTVADLEPHQIHTFYESV 102
           ++VGE+EPF+SELLS L T V DL+PHQIHTFYESV
Sbjct: 606 VQVGESEPFVSELLSGLATIVGDLQPHQIHTFYESV 641

The following BLAST results are available for this feature:

BLAST of Tan0000565 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SMV6	2.0e-09	77.78	Protein EXPORTIN 1A OS=Arabidopsis thaliana OX=3702 GN=XPO1 PE=1 SV=1	[more]
F4IZR5	1.0e-08	75.00	Protein EXPORTIN 1B OS=Arabidopsis thaliana OX=3702 GN=XPO1B PE=2 SV=1	[more]
Q54EV7	1.8e-05	63.89	Exportin-1 OS=Dictyostelium discoideum OX=44689 GN=xpo1 PE=3 SV=2	[more]
O14980	6.8e-05	51.35	Exportin-1 OS=Homo sapiens OX=9606 GN=XPO1 PE=1 SV=1	[more]
Q6P5F9	6.8e-05	51.35	Exportin-1 OS=Mus musculus OX=10090 GN=Xpo1 PE=1 SV=1	[more]

BLAST of Tan0000565 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE9464667.1	2.0e-09	83.78	hypothetical protein C3L33_03460, partial [Rhododendron williamsianum]	[more]
KAF5725608.1	3.3e-09	94.44	protein EXPORTIN 1A [Tripterygium wilfordii]	[more]
XP_038696434.1	3.3e-09	94.44	protein EXPORTIN 1A-like [Tripterygium wilfordii]	[more]
XP_023535095.1	5.7e-09	88.89	protein EXPORTIN 1A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023535105.1 prot...	[more]
XP_022966430.1	5.7e-09	88.89	protein EXPORTIN 1A [Cucurbita maxima] >XP_022966503.1 protein EXPORTIN 1A [Cucu...	[more]

BLAST of Tan0000565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A4MDT3	9.5e-10	83.78	Importin N-terminal domain-containing protein (Fragment) OS=Rhododendron william...	[more]
A0A6N2N5U9	1.2e-09	86.49	Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS4039...	[more]
A0A7J7BUU8	1.6e-09	94.44	Protein EXPORTIN 1A OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G00333 PE=3...	[more]
A0A6J1HRL8	2.8e-09	88.89	protein EXPORTIN 1A OS=Cucurbita maxima OX=3661 GN=LOC111466054 PE=3 SV=1	[more]
A0A6J1CGI1	2.8e-09	88.89	protein EXPORTIN 1A OS=Momordica charantia OX=3673 GN=LOC111011464 PE=3 SV=1	[more]

BLAST of Tan0000565 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17020.1	1.4e-10	77.78	exportin 1A	[more]
AT5G17020.2	1.4e-10	77.78	exportin 1A	[more]
AT3G03110.1	7.2e-10	75.00	exportin 1B	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 46..66
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 43..103 e-value: 3.2E-7 score: 31.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000565.1	Tan0000565.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006611	protein export from nucleus
biological_process	GO:0000055	ribosomal large subunit export from nucleus
biological_process	GO:0000056	ribosomal small subunit export from nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005049	nuclear export signal receptor activity
molecular_function	GO:0031267	small GTPase binding