Tan0000556 (gene) Snake gourd v1

Overview


Name	Tan0000556
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	SANT domain-containing protein
Location	LG02: 88277970 .. 88279611 (-)
RNA-Seq Expression	Tan0000556
Synteny	Tan0000556

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCAGAGGAATTTGCAGGTCAGAAAAAATAAAAATAAAAAATGAGTTCTTCTTCATCTTCAAGCTCGAGCGTTTGGAGTTCAAAGCAAAACAAGCTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCTGGCGAGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAAAGGCACTACGAGATGCTGGTGGAGGATGTTCATAATATTGAGACCGGCAGAGTTCCTTTGCCCAATTACTCTAAACATTTCAGCTCCAACTTTCTTGATGAACAACAAAGGTTTAATGATCTCTTTCTCTTTCTCTAATCAATGTTTTTGGATTAAGATCTTGAAATTCATTGTTGGTATGGTTTCATTCTTGATTTTGATCTAAAATTTAATAACGGTCACATGGATATTTTTGTAATTTTATTACTTAACACGAGTTCTTACTCACTTTCTGATGTGGTGTATTTTTAGTAGCTCAAAAATTTTAGTGAAATCTACTTTTGAATATCACACAAGCAAGTATTGTTTCGCTTAATATATGTGTTTTCAAAGCAATATATTAGAAATTTAGACTAGTAAGATAAATGAGAAAAAGTATGTAATTATTATTTTATGATTATTGGGTAAATAAATAATATGTCACTTTCAATTAAAATTAGTGATTCCCTCTACTTTTCATTGAAATAAGGGAATCGATCTTGGTAGAAGTCTCTAAACTACTTCCTACTAGTGTTTAATGATTTGGATTAGGTTGAGATATCTTTTAGATTTAATTGAATTATTACGTTTGTAAATTTTTGGACCATAAATTAAAACATTTATGATTAGATTGGTACAAATTATTTGAGTCACTTATTCAAAGGTTTATTTCAAGGAAAGAAAATGTTTAATATCTAAACATCTCTTTATTTTTTTTCTTACTATTAACCGCTCAATTTTAATTTGTATTATGAAAAAATATTTTTAAAAGTTTAAAATGAAAATAAACATACGTATATGGAATATGAGTAAAAGAAATATTTTTTAAAACCCATTAATTACTTTAGATGGTCCAATTTAACCTAAATTAATTTTAAGTGAGCTCATAAACTAAATCCATTTATGTCATTTTTATTTATTTGAACTCAATTCAACTCAAATAAATTCACAAAGTATAACACAAATCTAAACCAAACCGATTGTGATAAGTTCTTCAATTCATCGAATTTTTTTGAATACCCTACTCTCTCCAATTGGTCAATTCAATGCTCGGTTTAAAACTATTAAAAGGGAGTACTAATGTTTAATTATTTTAGGGATTTTAATGTATTTATTGATTTATGCTAATGGTTGATGTTTTGTTTTTTGCAGATTGAAGAGTCTAAAGCTACAATGATTTGCAACAACAAACAAGATTGAAGTCAAAGAATAAAAGCTACTGCATTTCAACCAAAGTTCCAAACTGAAAAGCACTTGTTGATATGTATGAGAAAGAATATTCTACATGTGAATTAAATTATATAGTTTTTTCCACTATAAAATGTCATATATTTAAATGAATTTACTATGGCATATGTATTTAATCAATCTCATGGCTTGTTATGCAATGTATAATTAAATATATAAAATGGGTTGTCTTTCTCTCTCTA

mRNA sequence

GGGCAGAGGAATTTGCAGGTCAGAAAAAATAAAAATAAAAAATGAGTTCTTCTTCATCTTCAAGCTCGAGCGTTTGGAGTTCAAAGCAAAACAAGCTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCTGGCGAGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAAAGGCACTACGAGATGCTGGTGGAGGATGTTCATAATATTGAGACCGGCAGAGTTCCTTTGCCCAATTACTCTAAACATTTCAGCTCCAACTTTCTTGATGAACAACAAAGATTGAAGAGTCTAAAGCTACAATGATTTGCAACAACAAACAAGATTGAAGTCAAAGAATAAAAGCTACTGCATTTCAACCAAAGTTCCAAACTGAAAAGCACTTGTTGATATGTATGAGAAAGAATATTCTACATGTGAATTAAATTATATAGTTTTTTCCACTATAAAATGTCATATATTTAAATGAATTTACTATGGCATATGTATTTAATCAATCTCATGGCTTGTTATGCAATGTATAATTAAATATATAAAATGGGTTGTCTTTCTCTCTCTA

Coding sequence (CDS)

ATGAGTTCTTCTTCATCTTCAAGCTCGAGCGTTTGGAGTTCAAAGCAAAACAAGCTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAAGCTGGCGAGAGCCGTCGGCGGGAAGACGGCGGAGGAAGTGAAAAGGCACTACGAGATGCTGGTGGAGGATGTTCATAATATTGAGACCGGCAGAGTTCCTTTGCCCAATTACTCTAAACATTTCAGCTCCAACTTTCTTGATGAACAACAAAGATTGAAGAGTCTAAAGCTACAATGA

Protein sequence

MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSKHFSSNFLDEQQRLKSLKLQ

Homology

[Close]

BLAST of Tan0000556 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-24
Identity = 60/98 (61.22%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 1  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVED 60
          M+S+S SS S W+  QNK+FE AL VYDKD+PDRW  +A+AVGGKT EEVKRHY++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VHNIETGRVPLPNYSKHFSSNFLD----EQQRLKSLKL 95
          + NIETGRVPLPNY K F SN       + +++K+LK+
Sbjct: 61 LINIETGRVPLPNY-KTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Tan0000556 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.7e-23
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVED 60
          M+SSS SSSS W+SKQNK+FE AL VYDKD+PDRWQ +A+AVG K+AEEVKRHY++LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VHNIETGRVPLPNY 75
          + NIE   VPLP Y
Sbjct: 61 LMNIEQDLVPLPKY 74

[Close]

BLAST of Tan0000556 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-22
Identity = 51/97 (52.58%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 2   SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDV 61
           SS SS SS  W++KQNK FE AL  YD+D+P+RWQ +A+ VGGKT EEVKRHYE+LV+D+
Sbjct: 4   SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62  HNIETGRVPLPNYSKH---FSSNFLDEQQRLKSLKLQ 96
           ++IE G VP PNY       +     E++R+++++LQ
Sbjct: 64  NSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of Tan0000556 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-21
Identity = 48/74 (64.86%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVED 60
          M+S+S SSS+ W+ K+NKLFE AL  YD+D+PDRW  +ARAVGGK+AEEV+RHYE+L+ D
Sbjct: 1  MASNSMSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRD 60

Query: 61 VHNIETGRVPLPNY 75
          V++IE+GR P PNY
Sbjct: 61 VNDIESGRYPHPNY 74

[Close]

BLAST of Tan0000556 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.1e-21
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 3   SSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVH 62
           S SS  S  W+ KQNK FE AL VYD+D+PDRW  +ARAVGGKT EE KR Y++LV D+ 
Sbjct: 5   SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63  NIETGRVPLPNYSKHFSSN----FLDEQQRLKSLKLQ 96
           +IE G VP P+Y     ++      DE++R++S+KLQ
Sbjct: 65  SIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKLQ 101

[Close]

BLAST of Tan0000556 vs. NCBI nr
Match: XP_008444713.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 167.2 bits (422), Expect = 7.1e-38
Identity = 85/95 (89.47%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 2   SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDV 61
           +SSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYEMLVEDV
Sbjct: 6   TSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDV 65

Query: 62  HNIETGRVPLPNYSKHFS-SNFLDEQQRLKSLKLQ 96
           HNIETG+VPLPNYSKH+S +NFLDE+QRLK LKLQ
Sbjct: 66  HNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ 100

[Close]

BLAST of Tan0000556 vs. NCBI nr
Match: XP_031737271.1 (protein RADIALIS-like 4 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 2.1e-37
Identity = 84/96 (87.50%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 2   SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDV 61
           +SSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYEMLVEDV
Sbjct: 6   TSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDV 65

Query: 62  HNIETGRVPLPNYSKHFS--SNFLDEQQRLKSLKLQ 96
           HNIETG+VPLPNYSKH+S  +NF+DE+QRLK LKLQ
Sbjct: 66  HNIETGKVPLPNYSKHYSYNNNFVDEEQRLKGLKLQ 101

[Close]

BLAST of Tan0000556 vs. NCBI nr
Match: XP_038886301.1 (protein RADIALIS-like 3 [Benincasa hispida])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 83/95 (87.37%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 2  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDV 61
          +SSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLA A+GGKTAEEVK HY+MLVEDV
Sbjct: 5  ASSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLASAIGGKTAEEVKTHYDMLVEDV 64

Query: 62 HNIETGRVPLPNYSKHFS-SNFLDEQQRLKSLKLQ 96
          HNIETGRVPLPNYSKH+S +NFLDE+QRLK LKLQ
Sbjct: 65 HNIETGRVPLPNYSKHYSYNNFLDEEQRLKGLKLQ 99

[Close]

BLAST of Tan0000556 vs. NCBI nr
Match: XP_022997502.1 (protein RADIALIS-like 4 [Cucurbita maxima])

HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35
Identity = 86/98 (87.76%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 2   SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDV 61
           SSSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLA +VGGKTAEEVKRHYEMLVEDV
Sbjct: 3   SSSSSSSSSCWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDV 62

Query: 62  HNIETGRVPLPNY---SKHFSSN-FLDEQQRLKSLKLQ 96
           HNIETGRVPLPNY   SKH SSN FLDE+QRLK LKL+
Sbjct: 63  HNIETGRVPLPNYSKPSKHCSSNTFLDEEQRLKGLKLK 100

[Close]

BLAST of Tan0000556 vs. NCBI nr
Match: XP_023002559.1 (protein RADIALIS-like 4 [Cucurbita maxima])

HSP 1 Score: 159.1 bits (401), Expect = 1.9e-35
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 2  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDV 61
          SSSSSSSS+VWSSKQNK+FENALTVYDKDSPDRWQKLA AVGGKTAEEVKRHYEMLVEDV
Sbjct: 4  SSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDV 63

Query: 62 HNIETGRVPLPNY---SKHFSSNFLDEQQRLKSLKL 95
          HNIE GR+PLPNY   SK + SNFLDE+QRLK LKL
Sbjct: 64 HNIEIGRIPLPNYSNSSKQYYSNFLDEEQRLKGLKL 99

[Close]

BLAST of Tan0000556 vs. ExPASy TrEMBL
Match: A0A1S3BBR2 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.4e-38
Identity = 85/95 (89.47%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 2   SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDV 61
           +SSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYEMLVEDV
Sbjct: 6   TSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDV 65

Query: 62  HNIETGRVPLPNYSKHFS-SNFLDEQQRLKSLKLQ 96
           HNIETG+VPLPNYSKH+S +NFLDE+QRLK LKLQ
Sbjct: 66  HNIETGKVPLPNYSKHYSYNNFLDEEQRLKGLKLQ 100

[Close]

BLAST of Tan0000556 vs. ExPASy TrEMBL
Match: A0A6J1K580 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492400 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.1e-36
Identity = 86/98 (87.76%), Postives = 90/98 (91.84%), Query Frame = 0


Query: 2   SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDV 61
           SSSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLA +VGGKTAEEVKRHYEMLVEDV
Sbjct: 3   SSSSSSSSSCWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDV 62

Query: 62  HNIETGRVPLPNY---SKHFSSN-FLDEQQRLKSLKLQ 96
           HNIETGRVPLPNY   SKH SSN FLDE+QRLK LKL+
Sbjct: 63  HNIETGRVPLPNYSKPSKHCSSNTFLDEEQRLKGLKLK 100

[Close]

BLAST of Tan0000556 vs. ExPASy TrEMBL
Match: A0A6J1KQS6 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496369 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 9.3e-36
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 2  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDV 61
          SSSSSSSS+VWSSKQNK+FENALTVYDKDSPDRWQKLA AVGGKTAEEVKRHYEMLVEDV
Sbjct: 4  SSSSSSSSNVWSSKQNKVFENALTVYDKDSPDRWQKLAGAVGGKTAEEVKRHYEMLVEDV 63

Query: 62 HNIETGRVPLPNY---SKHFSSNFLDEQQRLKSLKL 95
          HNIE GR+PLPNY   SK + SNFLDE+QRLK LKL
Sbjct: 64 HNIEIGRIPLPNYSNSSKQYYSNFLDEEQRLKGLKL 99

[Close]

BLAST of Tan0000556 vs. ExPASy TrEMBL
Match: A0A6J1CRB5 (protein RADIALIS-like 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014035 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.9e-35
Identity = 79/92 (85.87%), Postives = 86/92 (93.48%), Query Frame = 0


Query: 4  SSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVHN 63
          SSSSSSS+WSSKQNKLFENALTVYDK+SP+RWQ LARAVGGKTAEEVK HY+MLVEDVHN
Sbjct: 3  SSSSSSSLWSSKQNKLFENALTVYDKESPERWQNLARAVGGKTAEEVKTHYDMLVEDVHN 62

Query: 64 IETGRVPLPNYSKHFSSNFLDEQQRLKSLKLQ 96
          IE+GRVPLPNY+    SNFL+EQQRLKSLKLQ
Sbjct: 63 IESGRVPLPNYNTKQYSNFLEEQQRLKSLKLQ 94

[Close]

BLAST of Tan0000556 vs. ExPASy TrEMBL
Match: A0A0A0LNL9 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361640 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.0e-34
Identity = 78/89 (87.64%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 2  SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDV 61
          +SSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLARAVGGKTA+EVKRHYEMLVEDV
Sbjct: 6  TSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDV 65

Query: 62 HNIETGRVPLPNYSKHFS--SNFLDEQQR 89
          HNIETG+VPLPNYSKH+S  +NF+DE+QR
Sbjct: 66 HNIETGKVPLPNYSKHYSYNNNFVDEEQR 94

[Close]

BLAST of Tan0000556 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-25
Identity = 60/98 (61.22%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 1  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVED 60
          M+S+S SS S W+  QNK+FE AL VYDKD+PDRW  +A+AVGGKT EEVKRHY++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VHNIETGRVPLPNYSKHFSSNFLD----EQQRLKSLKL 95
          + NIETGRVPLPNY K F SN       + +++K+LK+
Sbjct: 61 LINIETGRVPLPNY-KTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Tan0000556 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-25
Identity = 57/81 (70.37%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVED 60
          M+S+S SS S W+  QNK+FE AL VYDKD+PDRW  +A+AVGGKT EEVKRHY++LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VHNIETGRVPLPNYSKHFSSN 82
          + NIETGRVPLPNY K F SN
Sbjct: 61 LINIETGRVPLPNY-KTFESN 80

[Close]

BLAST of Tan0000556 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 107.5 bits (267), Expect = 6.2e-24
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1  MSSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVED 60
          M+SSS SSSS W+SKQNK+FE AL VYDKD+PDRWQ +A+AVG K+AEEVKRHY++LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VHNIETGRVPLPNY 75
          + NIE   VPLP Y
Sbjct: 61 LMNIEQDLVPLPKY 74

[Close]

BLAST of Tan0000556 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 105.5 bits (262), Expect = 2.3e-23
Identity = 51/97 (52.58%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 2   SSSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDV 61
           SS SS SS  W++KQNK FE AL  YD+D+P+RWQ +A+ VGGKT EEVKRHYE+LV+D+
Sbjct: 4   SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62  HNIETGRVPLPNYSKH---FSSNFLDEQQRLKSLKLQ 96
           ++IE G VP PNY       +     E++R+++++LQ
Sbjct: 64  NSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of Tan0000556 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 100.9 bits (250), Expect = 5.8e-22
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 3   SSSSSSSSVWSSKQNKLFENALTVYDKDSPDRWQKLARAVGGKTAEEVKRHYEMLVEDVH 62
           S SS  S  W+ KQNK FE AL VYD+D+PDRW  +ARAVGGKT EE KR Y++LV D+ 
Sbjct: 5   SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63  NIETGRVPLPNYSKHFSSN----FLDEQQRLKSLKLQ 96
           +IE G VP P+Y     ++      DE++R++S+KLQ
Sbjct: 65  SIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKLQ 101

The following BLAST results are available for this feature:

BLAST of Tan0000556 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1A173	1.6e-24	61.22	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	8.7e-23	71.62	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	3.3e-22	52.58	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q6NNN0	1.3e-21	64.86	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q9SIJ5	8.1e-21	52.58	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]

BLAST of Tan0000556 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444713.1	7.1e-38	89.47	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]
XP_031737271.1	2.1e-37	87.50	protein RADIALIS-like 4 [Cucumis sativus]	[more]
XP_038886301.1	1.0e-36	87.37	protein RADIALIS-like 3 [Benincasa hispida]	[more]
XP_022997502.1	1.5e-35	87.76	protein RADIALIS-like 4 [Cucurbita maxima]	[more]
XP_023002559.1	1.9e-35	86.46	protein RADIALIS-like 4 [Cucurbita maxima]	[more]

BLAST of Tan0000556 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BBR2	3.4e-38	89.47	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487968 PE=4 SV=1	[more]
A0A6J1K580	7.1e-36	87.76	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111492400 PE=4 SV=1	[more]
A0A6J1KQS6	9.3e-36	86.46	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111496369 PE=4 SV=1	[more]
A0A6J1CRB5	7.9e-35	85.87	protein RADIALIS-like 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC11101403...	[more]
A0A0A0LNL9	1.0e-34	87.64	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361640 PE=4 S...	[more]

BLAST of Tan0000556 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75250.2	1.1e-25	61.22	RAD-like 6	[more]
AT1G75250.1	1.9e-25	70.37	RAD-like 6	[more]
AT1G19510.1	6.2e-24	71.62	RAD-like 5	[more]
AT4G39250.1	2.3e-23	52.58	RAD-like 1	[more]
AT2G21650.1	5.8e-22	52.58	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 4.1E-6 score: 36.3
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 4..58 score: 6.202429
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 18..58 e-value: 2.11135E-4 score: 34.0882
None	No IPR available	GENE3D	1.10.10.60		coord: 2..71 e-value: 1.7E-23 score: 84.1
None	No IPR available	PANTHER	PTHR43952:SF52	MYB FAMILY TRANSCRIPTION FACTOR	coord: 7..95
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 7..95
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 7..62 score: 9.490546
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000556.1	Tan0000556.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity