Tan0000544 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACCTTGAAATGGAGTCAATGGACTTCAATTCGGTATGGGAACTTGTAGACCAACTTTGAAGGGGTTAGACCCATAGGGTGTAAATGGATCTATAAGAGAAAGAGAGATGCAACAGGAAAGGTGCATGGACCTTTAAGGCTAGGCTTGTAGCAAAGGGTTTTACCCAAAGGGAATGAGTTGACTATGAAGAAACTTTTTCCCCCGCTGCTATCTTTGAAGTCTATAAGGATACTCTTGTCCATAGCCGCGTTTTATGATTATGAAATTTGGCGAGATGGACGTCAAGACCGCCTTTTTGAATGGTAATCTTGACGAGAGCATTTATATGTCTTAGCCCGAAGGGTTCATAGCCCAAGGTCAGGAGCAAAAAGTTTGCAAGCTTAATCGATCAATTTATGGATTGAAACAAGCGTCAAGATCTTGGAATATAAGATTTGATACTGCGATCAAGTCTTATGGCTTTGACCAAAACGTTGATGAGCCTTGTGTTTACAAGAGGATCGTCAACGACAAAGTAGCTTTGTTAGTACTTTATGTGGATAATATCCTACTCATTGGGAATGATGTAGGATACCTAACTGACATAAAGAATTGGATGGCGACCCAATTCCAAATGAAAGATTTGGGAGAGGCGCAGTATGTTCTTGGGATTCAGATCTTTAGGAATCGCAAGAACAAAATGCTAGCACTGTCTCAAGCGTCTTATATCGACAAAATATTGTCCAGATATTCGATGTAAAATTCTAAGAGGGGCTTATTACCCTTCAGGCACGGAGTTCATCTGTCTAGGGAACAGTGTCCCAAGACACCTCAAGAAGTTGAAGATATGAGACATATTCCCTATGCCTCTGCAGTAGGTAGCTTAATGTATGCTATGCTATGCACAATGCCGGACATTTGTTATGCAGTGGGAATAGTCAGTAGGTACCAGTCCAATCCAGGATTAGACCACTGGACAACAGTTAAAAATATCCTCAAGTATCTAAGGAGAACGAGGGACTATATGCTTGTGTATGGGTTTAAGGATCTGATCCTTACTGGATACACTGATTCTGATTTTCAGACCGATAAGAATTCTTAAAAATCCACATCGGGATCAGTTTTCACCCTTAACGAGGGAGCCATAGTATGGCGAAGCATCAAGTAAGGATGCATCGCTGACTACACAACGGAGGCTGAGTATGTCGCTGCTTGTGAAGCAGCTAAAGAGGCTATTTGGCTAAGGAAATTCTTTACTGATTTGAAAGTTGTTCCAAATATGGAATCTCCCATCACCTTATACTGTGACAACAGTGGTGCGGTAGCCAATTCGAAGGAACCTCGCAGCCATAAGCGAGGAAAGCACATCGAGAGAAAGTATTACTTGATACGAGGAATAGTGCAACGAGGAGATGTGACAGTCACGAAGATCGCTTCGAAGCACAATATTGTTGATCCGTTTATAAAGACTCTCACGGCTAAAGTGTTCGAGGGTCATCTGGAAAGTTTGGGTCTACGAGATATGTACATAAGCTAA ATGGACCTTGAAATGGAGTCAATGGACTTCAATTCGCCCGAAGGGTTCATAGCCCAAGGTCAGGAGCAAAAAGTTTGCAAGCTTAATCGATCAATTTATGGATTGAAACAAGCGTCAAGATCTTGGAATATAAGATTTGATACTGCGATCAAGTCTTATGGCTTTGACCAAAACGTTGATGAGCCTTGTGTTTACAAGAGGATCGTCAACGACAAAGTAGCTTTGTTAGTACTTTATGTGGATAATATCCTACTCATTGGGAATGATGTAGGATACCTAACTGACATAAAGAATTGGATGGCGACCCAATTCCAAATGAAAGATTTGGGAGAGGCGCAGCACGGAGTTCATCTGTCTAGGGAACAGTGTCCCAAGACACCTCAAGAAGTTGAAGATATGAGACATATTCCCTATGCCTCTGCAGTAGCTAAAGAGGCTATTTGGCTAAGGAAATTCTTTACTGATTTGAAAGTTGTTCCAAATATGGAATCTCCCATCACCTTATACTGTGACAACAGTGGTGCGGTAGCCAATTCGAAGGAACCTCGCAGCCATAAGCGAGGAAAGCACATCGAGAGAAAGTATTACTTGATACGAGGAATAGTGCAACGAGGAGATGTGACAGTCACGAAGATCGCTTCGAAGCACAATATTGTTGATCCGTTTATAAAGACTCTCACGGCTAAAGTGTTCGAGGGTCATCTGGAAAGTTTGGGTCTACGAGATATGTACATAAGCTAA ATGGACCTTGAAATGGAGTCAATGGACTTCAATTCGCCCGAAGGGTTCATAGCCCAAGGTCAGGAGCAAAAAGTTTGCAAGCTTAATCGATCAATTTATGGATTGAAACAAGCGTCAAGATCTTGGAATATAAGATTTGATACTGCGATCAAGTCTTATGGCTTTGACCAAAACGTTGATGAGCCTTGTGTTTACAAGAGGATCGTCAACGACAAAGTAGCTTTGTTAGTACTTTATGTGGATAATATCCTACTCATTGGGAATGATGTAGGATACCTAACTGACATAAAGAATTGGATGGCGACCCAATTCCAAATGAAAGATTTGGGAGAGGCGCAGCACGGAGTTCATCTGTCTAGGGAACAGTGTCCCAAGACACCTCAAGAAGTTGAAGATATGAGACATATTCCCTATGCCTCTGCAGTAGCTAAAGAGGCTATTTGGCTAAGGAAATTCTTTACTGATTTGAAAGTTGTTCCAAATATGGAATCTCCCATCACCTTATACTGTGACAACAGTGGTGCGGTAGCCAATTCGAAGGAACCTCGCAGCCATAAGCGAGGAAAGCACATCGAGAGAAAGTATTACTTGATACGAGGAATAGTGCAACGAGGAGATGTGACAGTCACGAAGATCGCTTCGAAGCACAATATTGTTGATCCGTTTATAAAGACTCTCACGGCTAAAGTGTTCGAGGGTCATCTGGAAAGTTTGGGTCTACGAGATATGTACATAAGCTAA MDLEMESMDFNSPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKRIVNDKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQHGVHLSREQCPKTPQEVEDMRHIPYASAVAKEAIWLRKFFTDLKVVPNMESPITLYCDNSGAVANSKEPRSHKRGKHIERKYYLIRGIVQRGDVTVTKIASKHNIVDPFIKTLTAKVFEGHLESLGLRDMYIS Homology
BLAST of Tan0000544 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 4.1e-24 Identity = 95/399 (23.81%), Postives = 143/399 (35.84%), Query Frame = 0
BLAST of Tan0000544 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 71.6 bits (174), Expect = 1.4e-11 Identity = 39/119 (32.77%), Postives = 67/119 (56.30%), Query Frame = 0
HSP 2 Score: 68.2 bits (165), Expect = 1.5e-10 Identity = 34/97 (35.05%), Postives = 54/97 (55.67%), Query Frame = 0
BLAST of Tan0000544 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 5.2e-11 Identity = 33/114 (28.95%), Postives = 64/114 (56.14%), Query Frame = 0
BLAST of Tan0000544 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 2.0e-10 Identity = 30/115 (26.09%), Postives = 65/115 (56.52%), Query Frame = 0
BLAST of Tan0000544 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2) HSP 1 Score: 57.8 bits (138), Expect = 2.0e-07 Identity = 33/117 (28.21%), Postives = 55/117 (47.01%), Query Frame = 0
BLAST of Tan0000544 vs. NCBI nr
Match: KAA0026042.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 380.9 bits (977), Expect = 8.0e-102 Identity = 204/326 (62.58%), Postives = 218/326 (66.87%), Query Frame = 0
BLAST of Tan0000544 vs. NCBI nr
Match: KAA0026154.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK11614.1 gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 377.5 bits (968), Expect = 8.9e-101 Identity = 197/300 (65.67%), Postives = 210/300 (70.00%), Query Frame = 0
BLAST of Tan0000544 vs. NCBI nr
Match: KAA0033228.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 372.1 bits (954), Expect = 3.7e-99 Identity = 202/331 (61.03%), Postives = 214/331 (64.65%), Query Frame = 0
BLAST of Tan0000544 vs. NCBI nr
Match: TYK04889.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 367.9 bits (943), Expect = 7.1e-98 Identity = 204/324 (62.96%), Postives = 213/324 (65.74%), Query Frame = 0
BLAST of Tan0000544 vs. NCBI nr
Match: KAA0046028.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 367.5 bits (942), Expect = 9.2e-98 Identity = 198/318 (62.26%), Postives = 214/318 (67.30%), Query Frame = 0
BLAST of Tan0000544 vs. ExPASy TrEMBL
Match: A0A5A7SLM0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00280 PE=4 SV=1) HSP 1 Score: 380.9 bits (977), Expect = 3.9e-102 Identity = 204/326 (62.58%), Postives = 218/326 (66.87%), Query Frame = 0
BLAST of Tan0000544 vs. ExPASy TrEMBL
Match: A0A5A7SKC5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00600 PE=4 SV=1) HSP 1 Score: 377.5 bits (968), Expect = 4.3e-101 Identity = 197/300 (65.67%), Postives = 210/300 (70.00%), Query Frame = 0
BLAST of Tan0000544 vs. ExPASy TrEMBL
Match: A0A5A7SRR6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00180 PE=4 SV=1) HSP 1 Score: 372.1 bits (954), Expect = 1.8e-99 Identity = 202/331 (61.03%), Postives = 214/331 (64.65%), Query Frame = 0
BLAST of Tan0000544 vs. ExPASy TrEMBL
Match: A0A5D3C3C9 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00860 PE=4 SV=1) HSP 1 Score: 367.9 bits (943), Expect = 3.4e-98 Identity = 204/324 (62.96%), Postives = 213/324 (65.74%), Query Frame = 0
BLAST of Tan0000544 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1) HSP 1 Score: 360.5 bits (924), Expect = 5.5e-96 Identity = 209/399 (52.38%), Postives = 220/399 (55.14%), Query Frame = 0
BLAST of Tan0000544 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 68.6 bits (166), Expect = 8.2e-12 Identity = 37/121 (30.58%), Postives = 69/121 (57.02%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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