Tan0000544 (gene) Snake gourd v1

Overview
NameTan0000544
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
LocationLG06: 40303757 .. 40305276 (+)
RNA-Seq ExpressionTan0000544
SyntenyTan0000544
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCTTGAAATGGAGTCAATGGACTTCAATTCGGTATGGGAACTTGTAGACCAACTTTGAAGGGGTTAGACCCATAGGGTGTAAATGGATCTATAAGAGAAAGAGAGATGCAACAGGAAAGGTGCATGGACCTTTAAGGCTAGGCTTGTAGCAAAGGGTTTTACCCAAAGGGAATGAGTTGACTATGAAGAAACTTTTTCCCCCGCTGCTATCTTTGAAGTCTATAAGGATACTCTTGTCCATAGCCGCGTTTTATGATTATGAAATTTGGCGAGATGGACGTCAAGACCGCCTTTTTGAATGGTAATCTTGACGAGAGCATTTATATGTCTTAGCCCGAAGGGTTCATAGCCCAAGGTCAGGAGCAAAAAGTTTGCAAGCTTAATCGATCAATTTATGGATTGAAACAAGCGTCAAGATCTTGGAATATAAGATTTGATACTGCGATCAAGTCTTATGGCTTTGACCAAAACGTTGATGAGCCTTGTGTTTACAAGAGGATCGTCAACGACAAAGTAGCTTTGTTAGTACTTTATGTGGATAATATCCTACTCATTGGGAATGATGTAGGATACCTAACTGACATAAAGAATTGGATGGCGACCCAATTCCAAATGAAAGATTTGGGAGAGGCGCAGTATGTTCTTGGGATTCAGATCTTTAGGAATCGCAAGAACAAAATGCTAGCACTGTCTCAAGCGTCTTATATCGACAAAATATTGTCCAGATATTCGATGTAAAATTCTAAGAGGGGCTTATTACCCTTCAGGCACGGAGTTCATCTGTCTAGGGAACAGTGTCCCAAGACACCTCAAGAAGTTGAAGATATGAGACATATTCCCTATGCCTCTGCAGTAGGTAGCTTAATGTATGCTATGCTATGCACAATGCCGGACATTTGTTATGCAGTGGGAATAGTCAGTAGGTACCAGTCCAATCCAGGATTAGACCACTGGACAACAGTTAAAAATATCCTCAAGTATCTAAGGAGAACGAGGGACTATATGCTTGTGTATGGGTTTAAGGATCTGATCCTTACTGGATACACTGATTCTGATTTTCAGACCGATAAGAATTCTTAAAAATCCACATCGGGATCAGTTTTCACCCTTAACGAGGGAGCCATAGTATGGCGAAGCATCAAGTAAGGATGCATCGCTGACTACACAACGGAGGCTGAGTATGTCGCTGCTTGTGAAGCAGCTAAAGAGGCTATTTGGCTAAGGAAATTCTTTACTGATTTGAAAGTTGTTCCAAATATGGAATCTCCCATCACCTTATACTGTGACAACAGTGGTGCGGTAGCCAATTCGAAGGAACCTCGCAGCCATAAGCGAGGAAAGCACATCGAGAGAAAGTATTACTTGATACGAGGAATAGTGCAACGAGGAGATGTGACAGTCACGAAGATCGCTTCGAAGCACAATATTGTTGATCCGTTTATAAAGACTCTCACGGCTAAAGTGTTCGAGGGTCATCTGGAAAGTTTGGGTCTACGAGATATGTACATAAGCTAA

mRNA sequence

ATGGACCTTGAAATGGAGTCAATGGACTTCAATTCGCCCGAAGGGTTCATAGCCCAAGGTCAGGAGCAAAAAGTTTGCAAGCTTAATCGATCAATTTATGGATTGAAACAAGCGTCAAGATCTTGGAATATAAGATTTGATACTGCGATCAAGTCTTATGGCTTTGACCAAAACGTTGATGAGCCTTGTGTTTACAAGAGGATCGTCAACGACAAAGTAGCTTTGTTAGTACTTTATGTGGATAATATCCTACTCATTGGGAATGATGTAGGATACCTAACTGACATAAAGAATTGGATGGCGACCCAATTCCAAATGAAAGATTTGGGAGAGGCGCAGCACGGAGTTCATCTGTCTAGGGAACAGTGTCCCAAGACACCTCAAGAAGTTGAAGATATGAGACATATTCCCTATGCCTCTGCAGTAGCTAAAGAGGCTATTTGGCTAAGGAAATTCTTTACTGATTTGAAAGTTGTTCCAAATATGGAATCTCCCATCACCTTATACTGTGACAACAGTGGTGCGGTAGCCAATTCGAAGGAACCTCGCAGCCATAAGCGAGGAAAGCACATCGAGAGAAAGTATTACTTGATACGAGGAATAGTGCAACGAGGAGATGTGACAGTCACGAAGATCGCTTCGAAGCACAATATTGTTGATCCGTTTATAAAGACTCTCACGGCTAAAGTGTTCGAGGGTCATCTGGAAAGTTTGGGTCTACGAGATATGTACATAAGCTAA

Coding sequence (CDS)

ATGGACCTTGAAATGGAGTCAATGGACTTCAATTCGCCCGAAGGGTTCATAGCCCAAGGTCAGGAGCAAAAAGTTTGCAAGCTTAATCGATCAATTTATGGATTGAAACAAGCGTCAAGATCTTGGAATATAAGATTTGATACTGCGATCAAGTCTTATGGCTTTGACCAAAACGTTGATGAGCCTTGTGTTTACAAGAGGATCGTCAACGACAAAGTAGCTTTGTTAGTACTTTATGTGGATAATATCCTACTCATTGGGAATGATGTAGGATACCTAACTGACATAAAGAATTGGATGGCGACCCAATTCCAAATGAAAGATTTGGGAGAGGCGCAGCACGGAGTTCATCTGTCTAGGGAACAGTGTCCCAAGACACCTCAAGAAGTTGAAGATATGAGACATATTCCCTATGCCTCTGCAGTAGCTAAAGAGGCTATTTGGCTAAGGAAATTCTTTACTGATTTGAAAGTTGTTCCAAATATGGAATCTCCCATCACCTTATACTGTGACAACAGTGGTGCGGTAGCCAATTCGAAGGAACCTCGCAGCCATAAGCGAGGAAAGCACATCGAGAGAAAGTATTACTTGATACGAGGAATAGTGCAACGAGGAGATGTGACAGTCACGAAGATCGCTTCGAAGCACAATATTGTTGATCCGTTTATAAAGACTCTCACGGCTAAAGTGTTCGAGGGTCATCTGGAAAGTTTGGGTCTACGAGATATGTACATAAGCTAA

Protein sequence

MDLEMESMDFNSPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKRIVNDKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQHGVHLSREQCPKTPQEVEDMRHIPYASAVAKEAIWLRKFFTDLKVVPNMESPITLYCDNSGAVANSKEPRSHKRGKHIERKYYLIRGIVQRGDVTVTKIASKHNIVDPFIKTLTAKVFEGHLESLGLRDMYIS
Homology
BLAST of Tan0000544 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.1e-24
Identity = 95/399 (23.81%), Postives = 143/399 (35.84%), Query Frame = 0

Query: 2    DLEMESMDFNSPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDE 61
            DLE E +    PEGF   G++  VCKLN+S+YGLKQA R W ++FD+ +KS  + +   +
Sbjct: 931  DLE-EEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSD 990

Query: 62   PCVY-KRIVNDKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQH------ 121
            PCVY KR   +   +L+LYVD++L++G D G +  +K  ++  F MKDLG AQ       
Sbjct: 991  PCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKI 1050

Query: 122  --------------------------------------GVHLSREQCPKTPQEVEDMRHI 181
                                                   + LS++ CP T +E  +M  +
Sbjct: 1051 VRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKV 1110

Query: 182  PYASAV------------------------------------------------------ 241
            PY+SAV                                                      
Sbjct: 1111 PYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFG 1170

BLAST of Tan0000544 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-11
Identity = 39/119 (32.77%), Postives = 67/119 (56.30%), Query Frame = 0

Query: 6    ESMDFNSPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVY 65
            E +    P+G         VCKLN++IYGLKQA+R W   F+ A+K   F  +  + C+Y
Sbjct: 1014 EEIYMRLPQGISC--NSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIY 1073

Query: 66   ---KRIVNDKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQHGVHLSRE 122
               K  +N+ + +L LYVD++++   D+  + + K ++  +F+M DL E +H + +  E
Sbjct: 1074 ILDKGNINENIYVL-LYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIE 1129


HSP 2 Score: 68.2 bits (165), Expect = 1.5e-10
Identity = 34/97 (35.05%), Postives = 54/97 (55.67%), Query Frame = 0

Query: 144  KEAIWLRKFFTDLKVVPNMESPITLYCDNSGAVANSKEPRSHKRGKHIERKYYLIRGIVQ 203
            +EA+WL+   T + +   +E+PI +Y DN G ++ +  P  HKR KHI+ KY+  R  VQ
Sbjct: 1306 REALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQ 1365

Query: 204  RGDVTVTKIASKHNIVDPFIKTLTAKVFEGHLESLGL 241
               + +  I +++ + D F K L A  F    + LGL
Sbjct: 1366 NNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

BLAST of Tan0000544 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.2e-11
Identity = 33/114 (28.95%), Postives = 64/114 (56.14%), Query Frame = 0

Query: 11   NSPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKRIVN 70
            + P GFI + +   VCKL +++YGLKQA R+W +     + + GF  +V +  ++     
Sbjct: 1082 SQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRG 1141

Query: 71   DKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQHGVHLSREQCP 125
              +  +++YVD+IL+ GND   L +  + ++ +F +KD  E  + + +  ++ P
Sbjct: 1142 KSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVP 1195

BLAST of Tan0000544 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.0e-10
Identity = 30/115 (26.09%), Postives = 65/115 (56.52%), Query Frame = 0

Query: 11   NSPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKRIVN 70
            + P GF+ + +   VC+L ++IYGLKQA R+W +   T + + GF  ++ +  ++     
Sbjct: 1065 SQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRG 1124

Query: 71   DKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQHGVHLSREQCPK 126
              +  +++YVD+IL+ GND   L    + ++ +F +K+  +  + + +  ++ P+
Sbjct: 1125 RSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQ 1179

BLAST of Tan0000544 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 2.0e-07
Identity = 33/117 (28.21%), Postives = 55/117 (47.01%), Query Frame = 0

Query: 6   ESMDFNSPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVY 65
           E +    P GF+ +     V +L   +YGLKQA   WN   +  +K  GF ++  E  +Y
Sbjct: 14  EPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKKIGFCRHEGEHGLY 73

Query: 66  KRIVNDKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQHGVHLSREQ 123
            R  +D    + +YVD++L+          +K  +   + MKDLG+    + L+  Q
Sbjct: 74  FRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQ 130

BLAST of Tan0000544 vs. NCBI nr
Match: KAA0026042.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 380.9 bits (977), Expect = 8.0e-102
Identity = 204/326 (62.58%), Postives = 218/326 (66.87%), Query Frame = 0

Query: 6   ESMDFNSPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVY 65
           ES+  + PEGFI QGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSY FDQNVDEPCVY
Sbjct: 407 ESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYVFDQNVDEPCVY 466

Query: 66  KRIVNDKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQ-----------H 125
           K+I  +KVA LVLYVD+ILLIGNDVGYLTD+K W+A QFQM DLGEAQ           H
Sbjct: 467 KKINKEKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMNDLGEAQYNSKKGLLPFRH 526

Query: 126 GVHLSREQCPKTPQEVEDMRHIPYASAV-------------------------------- 185
           GVHLS+EQCPKTPQEVEDMR IPYAS+V                                
Sbjct: 527 GVHLSKEQCPKTPQEVEDMRRIPYASSVGSLMYVMLYTRPDICYGVGIVRYTDSDFPTDK 586

Query: 186 -------------------------------------------AKEAIWLRKFFTDLKVV 245
                                                      AKEA+WLRKF  DLKVV
Sbjct: 587 DSKKSTSGSVFTLNGGAVVWRNIKQGCIADSTMEAEYVATYEAAKEAVWLRKFLHDLKVV 646

BLAST of Tan0000544 vs. NCBI nr
Match: KAA0026154.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK11614.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 377.5 bits (968), Expect = 8.9e-101
Identity = 197/300 (65.67%), Postives = 210/300 (70.00%), Query Frame = 0

Query: 6   ESMDFNSPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVY 65
           ES+  + PEGFI QGQEQKVC LNR IYGLKQ SRSWNIRFDTAIKSY FDQNVDEPCVY
Sbjct: 544 ESIFMSQPEGFITQGQEQKVCNLNRFIYGLKQTSRSWNIRFDTAIKSYSFDQNVDEPCVY 603

Query: 66  KRIVNDKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQ------------ 125
           K+I   KVA LVLYVD+ILLIGNDVGYLTD+K W+A QFQMKDLGEAQ            
Sbjct: 604 KKINKGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAVQFQMKDLGEAQYVLGIQNSKKSL 663

Query: 126 ----HGVHLSREQCPKTPQEVEDMRHIPYASAV--------------------------- 185
               H VHLS+EQCPKTPQEVEDMR IPYAS +                           
Sbjct: 664 LPFRHEVHLSKEQCPKTPQEVEDMRRIPYASVMGSLMYAMLCTRLDICYAVGIVSSIKQG 723

Query: 186 -----------------AKEAIWLRKFFTDLKVVPNMESPITLYCDNSGAVANSKEPRSH 245
                            AKEA+WLRKF  DL+VVPNM  PITLYCDNSG VANSKEP SH
Sbjct: 724 CIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGTVANSKEPHSH 783

BLAST of Tan0000544 vs. NCBI nr
Match: KAA0033228.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 372.1 bits (954), Expect = 3.7e-99
Identity = 202/331 (61.03%), Postives = 214/331 (64.65%), Query Frame = 0

Query: 6   ESMDFNSPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVY 65
           ES+  + P+GFI QGQEQKVC+LN SIYGLKQASRSWNIRFDTAIKSY FDQNVDEPCVY
Sbjct: 615 ESIFMSQPKGFITQGQEQKVCELNGSIYGLKQASRSWNIRFDTAIKSYSFDQNVDEPCVY 674

Query: 66  KRIVNDKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQ------------ 125
           K+I   KVA LVLYVD+ILLIGNDVGYLTD+K W+A QFQMKDLGEAQ            
Sbjct: 675 KKINKGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRK 734

Query: 126 ------HGVHLSREQCPKTPQEVEDMRHIPYASAV------------------------- 185
                 HGVHLS+EQCPK P EVEDMR IPYASAV                         
Sbjct: 735 NKTLALHGVHLSKEQCPKKPHEVEDMRRIPYASAVGSLMHAMLCTRPDICYAVGIVSRYQ 794

Query: 186 ------------------------------------------------AKEAIWLRKFFT 245
                                                           AKE +WLRKF  
Sbjct: 795 SNPGLDHWTAVKIILKYLRRTRDYMLVIKQGCIADSTIEVEYVAACEAAKEVVWLRKFLH 854

BLAST of Tan0000544 vs. NCBI nr
Match: TYK04889.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 367.9 bits (943), Expect = 7.1e-98
Identity = 204/324 (62.96%), Postives = 213/324 (65.74%), Query Frame = 0

Query: 1   MDLEMESMDFN-----------------------------SPEGFIAQGQEQKVCKLNRS 60
           MDLEMESM FN                              PEGFI QGQEQKVCKLNRS
Sbjct: 52  MDLEMESMYFNLVWELVDLPEGVKPRGCKWIYKRKRDSVEKPEGFITQGQEQKVCKLNRS 111

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKRIVNDKVALLVLYVDNILLIGNDVG 120
           IYGLKQASR WNIRFDTAIKSYGFDQNVDEPCVYK+I   KVA LVLYVD+ILLI NDVG
Sbjct: 112 IYGLKQASRFWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIENDVG 171

Query: 121 YLTDIKNWMATQFQMKDLGEAQ-HGVHLSREQCPKTPQEVEDMRHIPYASAV-------- 180
           YLTD+K W+A QFQMKDLGEAQ HGVHLS+EQCPK PQEVEDMR IPYAS V        
Sbjct: 172 YLTDVKAWLAAQFQMKDLGEAQYHGVHLSKEQCPKKPQEVEDMRRIPYASTVGYTDYDFQ 231

Query: 181 ----------------------------------------------AKEAIWLRKFFTDL 240
                                                         AKEAIWLRKF  DL
Sbjct: 232 TDKDSRKSTSRSMFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAIWLRKFLHDL 291

BLAST of Tan0000544 vs. NCBI nr
Match: KAA0046028.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 367.5 bits (942), Expect = 9.2e-98
Identity = 198/318 (62.26%), Postives = 214/318 (67.30%), Query Frame = 0

Query: 7   SMDFNSPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYK 66
           S+  + P+GFI QGQEQKVCKLN SIYGLKQASRSWNIRFDTAIKSYGFDQNV+EPCVYK
Sbjct: 521 SIFMSQPKGFITQGQEQKVCKLNLSIYGLKQASRSWNIRFDTAIKSYGFDQNVNEPCVYK 580

Query: 67  RIVNDKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQH-GVHLSREQCPK 126
           +I  +KVA LVLYVD+ILLIGNDVGYLTD+K W+A QFQMKDL EAQ+ GVHLS+EQC K
Sbjct: 581 KINKEKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLEEAQYAGVHLSKEQCSK 640

Query: 127 TPQEVEDMRHIPYASAV------------------------------------------- 186
           TPQEVEDMR IPYASAV                                           
Sbjct: 641 TPQEVEDMRRIPYASAVGSLMYVMLYTRPDICYAVGIVSRYQSNPGLDHWTANSKKSTSG 700

Query: 187 -----------------------------------AKEAIWLRKFFTDLKVVPNMESPIT 246
                                              AKEAIWLRKF  DL+VVPNM   IT
Sbjct: 701 SVFTLNGGAVVWRSIKQGCIVDSTMEAEYVAAYEAAKEAIWLRKFLHDLEVVPNMNLRIT 760

BLAST of Tan0000544 vs. ExPASy TrEMBL
Match: A0A5A7SLM0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00280 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.9e-102
Identity = 204/326 (62.58%), Postives = 218/326 (66.87%), Query Frame = 0

Query: 6   ESMDFNSPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVY 65
           ES+  + PEGFI QGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSY FDQNVDEPCVY
Sbjct: 407 ESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYVFDQNVDEPCVY 466

Query: 66  KRIVNDKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQ-----------H 125
           K+I  +KVA LVLYVD+ILLIGNDVGYLTD+K W+A QFQM DLGEAQ           H
Sbjct: 467 KKINKEKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMNDLGEAQYNSKKGLLPFRH 526

Query: 126 GVHLSREQCPKTPQEVEDMRHIPYASAV-------------------------------- 185
           GVHLS+EQCPKTPQEVEDMR IPYAS+V                                
Sbjct: 527 GVHLSKEQCPKTPQEVEDMRRIPYASSVGSLMYVMLYTRPDICYGVGIVRYTDSDFPTDK 586

Query: 186 -------------------------------------------AKEAIWLRKFFTDLKVV 245
                                                      AKEA+WLRKF  DLKVV
Sbjct: 587 DSKKSTSGSVFTLNGGAVVWRNIKQGCIADSTMEAEYVATYEAAKEAVWLRKFLHDLKVV 646

BLAST of Tan0000544 vs. ExPASy TrEMBL
Match: A0A5A7SKC5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00600 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 4.3e-101
Identity = 197/300 (65.67%), Postives = 210/300 (70.00%), Query Frame = 0

Query: 6   ESMDFNSPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVY 65
           ES+  + PEGFI QGQEQKVC LNR IYGLKQ SRSWNIRFDTAIKSY FDQNVDEPCVY
Sbjct: 544 ESIFMSQPEGFITQGQEQKVCNLNRFIYGLKQTSRSWNIRFDTAIKSYSFDQNVDEPCVY 603

Query: 66  KRIVNDKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQ------------ 125
           K+I   KVA LVLYVD+ILLIGNDVGYLTD+K W+A QFQMKDLGEAQ            
Sbjct: 604 KKINKGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAVQFQMKDLGEAQYVLGIQNSKKSL 663

Query: 126 ----HGVHLSREQCPKTPQEVEDMRHIPYASAV--------------------------- 185
               H VHLS+EQCPKTPQEVEDMR IPYAS +                           
Sbjct: 664 LPFRHEVHLSKEQCPKTPQEVEDMRRIPYASVMGSLMYAMLCTRLDICYAVGIVSSIKQG 723

Query: 186 -----------------AKEAIWLRKFFTDLKVVPNMESPITLYCDNSGAVANSKEPRSH 245
                            AKEA+WLRKF  DL+VVPNM  PITLYCDNSG VANSKEP SH
Sbjct: 724 CIADSTMEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGTVANSKEPHSH 783

BLAST of Tan0000544 vs. ExPASy TrEMBL
Match: A0A5A7SRR6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00180 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.8e-99
Identity = 202/331 (61.03%), Postives = 214/331 (64.65%), Query Frame = 0

Query: 6   ESMDFNSPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVY 65
           ES+  + P+GFI QGQEQKVC+LN SIYGLKQASRSWNIRFDTAIKSY FDQNVDEPCVY
Sbjct: 615 ESIFMSQPKGFITQGQEQKVCELNGSIYGLKQASRSWNIRFDTAIKSYSFDQNVDEPCVY 674

Query: 66  KRIVNDKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQ------------ 125
           K+I   KVA LVLYVD+ILLIGNDVGYLTD+K W+A QFQMKDLGEAQ            
Sbjct: 675 KKINKGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRK 734

Query: 126 ------HGVHLSREQCPKTPQEVEDMRHIPYASAV------------------------- 185
                 HGVHLS+EQCPK P EVEDMR IPYASAV                         
Sbjct: 735 NKTLALHGVHLSKEQCPKKPHEVEDMRRIPYASAVGSLMHAMLCTRPDICYAVGIVSRYQ 794

Query: 186 ------------------------------------------------AKEAIWLRKFFT 245
                                                           AKE +WLRKF  
Sbjct: 795 SNPGLDHWTAVKIILKYLRRTRDYMLVIKQGCIADSTIEVEYVAACEAAKEVVWLRKFLH 854

BLAST of Tan0000544 vs. ExPASy TrEMBL
Match: A0A5D3C3C9 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00860 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.4e-98
Identity = 204/324 (62.96%), Postives = 213/324 (65.74%), Query Frame = 0

Query: 1   MDLEMESMDFN-----------------------------SPEGFIAQGQEQKVCKLNRS 60
           MDLEMESM FN                              PEGFI QGQEQKVCKLNRS
Sbjct: 52  MDLEMESMYFNLVWELVDLPEGVKPRGCKWIYKRKRDSVEKPEGFITQGQEQKVCKLNRS 111

Query: 61  IYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKRIVNDKVALLVLYVDNILLIGNDVG 120
           IYGLKQASR WNIRFDTAIKSYGFDQNVDEPCVYK+I   KVA LVLYVD+ILLI NDVG
Sbjct: 112 IYGLKQASRFWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIENDVG 171

Query: 121 YLTDIKNWMATQFQMKDLGEAQ-HGVHLSREQCPKTPQEVEDMRHIPYASAV-------- 180
           YLTD+K W+A QFQMKDLGEAQ HGVHLS+EQCPK PQEVEDMR IPYAS V        
Sbjct: 172 YLTDVKAWLAAQFQMKDLGEAQYHGVHLSKEQCPKKPQEVEDMRRIPYASTVGYTDYDFQ 231

Query: 181 ----------------------------------------------AKEAIWLRKFFTDL 240
                                                         AKEAIWLRKF  DL
Sbjct: 232 TDKDSRKSTSRSMFTLNGGAVVWRSIKQGCIADSTMEAEYVAACEAAKEAIWLRKFLHDL 291

BLAST of Tan0000544 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 5.5e-96
Identity = 209/399 (52.38%), Postives = 220/399 (55.14%), Query Frame = 0

Query: 6    ESMDFNSPEGFIAQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVY 65
            ES+  + PEGFI QGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVY
Sbjct: 836  ESIFMSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVY 895

Query: 66   KRIVNDKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQ------------ 125
            K+I   KVA LVLYVD+ILLIGNDVGYLTD+K W+A QFQMKDLGEAQ            
Sbjct: 896  KKINKGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLGEAQYVLGIQIIRDRK 955

Query: 126  --------------------------------HGVHLSREQCPKTPQEVEDMRHIPYASA 185
                                            HGVHLS+EQ PKTPQEVEDMR IPYASA
Sbjct: 956  NKTLALSQATYIDKLLVRYSMQNSKKGLLPFRHGVHLSKEQSPKTPQEVEDMRRIPYASA 1015

Query: 186  V----------------------------------------------------------- 245
            V                                                           
Sbjct: 1016 VGSLMYAMLCTRPDICYAVGIVSRYQSNPGLDHWTAVKIVLKYLRRTRDYMLVYGAKDLI 1075

BLAST of Tan0000544 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 68.6 bits (166), Expect = 8.2e-12
Identity = 37/121 (30.58%), Postives = 69/121 (57.02%), Query Frame = 0

Query: 6   ESMDFNSPEGFIA-QGQE---QKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDE 65
           E +    P G+ A QG       VC L +SIYGLKQASR W ++F   +  +GF Q+  +
Sbjct: 206 EEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSD 265

Query: 66  PCVYKRIVNDKVALLVLYVDNILLIGNDVGYLTDIKNWMATQFQMKDLGEAQH--GVHLS 121
              + +I       +++YVD+I++  N+   + ++K+ + + F+++DLG  ++  G+ ++
Sbjct: 266 HTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIA 325

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P109784.1e-2423.81Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041461.4e-1132.77Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q94HW25.2e-1128.95Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT942.0e-1026.09Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P256002.0e-0728.21Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
Match NameE-valueIdentityDescription
KAA0026042.18.0e-10262.58gag/pol protein [Cucumis melo var. makuwa][more]
KAA0026154.18.9e-10165.67gag/pol protein [Cucumis melo var. makuwa] >TYK11614.1 gag/pol protein [Cucumis ... [more]
KAA0033228.13.7e-9961.03gag/pol protein [Cucumis melo var. makuwa][more]
TYK04889.17.1e-9862.96retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m... [more]
KAA0046028.19.2e-9862.26gag/pol protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5A7SLM03.9e-10262.58Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G0028... [more]
A0A5A7SKC54.3e-10165.67Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G0060... [more]
A0A5A7SRR61.8e-9961.03Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G0018... [more]
A0A5D3C3C93.4e-9862.96Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var.... [more]
A0A5A7TZD05.5e-9652.38Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000... [more]
Match NameE-valueIdentityDescription
AT4G23160.18.2e-1230.58cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 10..114
e-value: 2.6E-26
score: 92.7
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 10..113
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 139..229
e-value: 8.19651E-30
score: 106.784

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0000544.1Tan0000544.1mRNA