Tan0000455 (gene) Snake gourd v1

Overview
NameTan0000455
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPhycobilisome rod-core linker polypeptide CpcG2 like
LocationLG08: 73418029 .. 73420808 (+)
RNA-Seq ExpressionTan0000455
SyntenyTan0000455
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTAGTTCTTTTACAATCAACGCAGATTATAAATGAGACTGCGAGAAGTTCGGCTGCGGCGTACAGAGTTTGCTCAGTTTGGGGCTTGCGTTCGAAGAAAATTAGGGCTTCAAACCATTATCATCGCGACGATATTATTCAGGTAAATATTTCCTAAATTCATCTGTTTCGATCGGCCTTCCTTGGCTGCAAATCCGTTTGTCTGCATGATTTTCCATTGATTGAAGGGTTTTGCTTATGTATTTCTCTTCTGTACTTTTTACGAGTTTCTATGTCTATGCCGATTCTATTGATTCCTAGAAGAAAGATAAAATTAGCTCCTGTAATCTTCTTCTGTCATTCCAGGCATACGCATCAAGTAGGTATCCGAATCGCTGTTGATTTATTTTAATACGTGGAAGCGAGCATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTTACCTCGTGAATGAGCTTCTCGTCAACAGTCTTGCGAACAGGTAATTGAATTTTCAGGCTTATTGCATGAGAGGACTTTTGTCCTTCGTGCCTGTATTTGAATTGGACGATGACGATGATGACGATGATGGTGTGTATATGTATATAATAATAAGCTTCATTCTCTGGCCGGAGGGACCAATTAGTTCCTATTTGGCTCGTTCCATTGAAGCAAGATATCCTCAGATTTTCTTTTATGTTTATCTGCTGCCAAAATCGTTGGGTGTGCGGATGAGAGATCTGAGAAAATTTTGCTACAGATTCATTTATTTTCCTTCTACGGAATTGATGTCTAATGATCTATGCTTGTTAAAGCGCTGCTAATATAAAATGGAATAAAAAACAATAACAAAGATGTTAACTTAGACCTTTTTCTTTTCTCTAACATTATATTGGTTCTATATGAGGTTGAGTTTAAGATATTAGGTAATGGTTTTTTTTAATGATTATAAAATGAATTATACTAAAGTAGCTGGGGAGGAAGGATTCGTCCAAGATTAAGAAGAAAGCTCAAAGCTACAAAAAAATGTTTTGATAGAAACACTAACACAACGGGATCCCATAAAACAGAAAAGGCTCTCCCTTCACTCAGAACATTTATACGTTAACGAAGAAGTCCATAGAAAAACTATAATAAAAATTTAGCCACAACCAGTGTTTTTTACAGCTGGAGGTGCATCTATAGCCCAATAGCCCTCTGATGCTTAAGCGCGAGGCACAACAAAAAAAGGGTTTTCTTTTATGAGGCATAGAGTAGATAAATGTAAATAAATTTTGTGCATACAAAGACAATTGTATTACGAATAATAAGATGATGAAAAGTTTAAGAAAGTAGAGTTTTTATTCGAGATTGTAGAGGGAAATGAATACTTTTTAAGAATATTCACGAGTTTCTTCTTTAAAAATTAACAGAAATTAAAGAGAAAGTTAGGCTTTAGGTGCTGCAAGTGCTTAGGTACACATCTTAAGCACTCTTCAACAACGGGGGTTAGTCAATGCTTGCCTGATTGAAGCCATCTGTACAAGGGGGTTAGTCGGAAAAACAGGGTAAACCAAGAGTGGGATTGAAGTAGGCAAAGGATAAATTTGATCTTGTAATTTTATTGTCCTTAAATCAATTATTTTCACGATTCTGTATGTTCACTCTATATTAGAGGACTCCTTCCTGATTACCCTCTATTTATATTCATGTATTTCTTTGTTCTGCTGGAAATTCTGTGTCAAGTAGCTTCAACTCAGTTATTTAGGCCTCTGGAACAGTGTCTCTGCTCTAAAACGATTATTCCTTGCTGTCTTCCCTACAAATTTCTCTTATTCTCTCGTTTGAACAATAGCTAATATTGACTTTGTAGGCTTGGAATAATTGTAGAGATGACCGTATCAATTATACTTTTAAGAGAGAGCCGTTTAGGTTCTTATAAAAAAAAGTTGAGCCATTTAGGTATTCTTTCCCTAGCATTTCTGCCATTGAATTGAAGATGTTCAATCTCAGTGACAACTGAAAAGTCACATTTGTCTGCATAACTAATACTCACGATGTTTATATTTCAAAAAACTATGCTCACGATGTTTGTCTGCTGAGTACTAACTGTTCATCGTTGAGAAATTATTTCATTCCCTCATTCTCCTTATTGCAGCCGTACATTTCAAAGGTTTGCTGTTAGGACATCAAAGCAAATCGAGGATATATCTACCAGGGGTAGGAACTTTACTTTTTTTGCTTCATTGATTTGGATTTTACTTATGGTATTCATTGTTGAGCTGATAAACTTATGCTAAAAAGACTTTGGAATTGTCTTTCAGCTGCACAGAAGAAGCAAGAACTTGCAGATCAGGTGAAAGATCTCTCCAAAAATTTCGAGGTGAAATGCTTCTTACAAATTAGATCTCTGTTTTACTTTGAACAGCTTAGACGTCTCCTCACGCGTATTCAATCTTTTTGCAGTCTTTCAAGAACCAATAATGCAGAACAGGACGTGTTACTGCAACATGATGTAAATCCTATTCCAAAATTCCAAATCCATTTTGCTCTCTTGTAGACATAATATTACAGCTTAACTTATAATAGTCGCAAAGTGTCTCAAAAATTGTTTGCAGCCTTCTCTGGCTTTTCTGTGTGTTGAATAATTGTGACGGTAGATTTTGATCTGTACTTCTACTTGAATCCTGTTCATCGGTGCCTGTGTTTGAAGCCAGGATATGACCATTTGCCTTTGACGTGTATGCACTTGCATGCTTCTGTAACTTGTTATCTTTGCTCCATTAACACAATTGGATTGGATCAGATTTTTAAACGCCA

mRNA sequence

TCTAGTTCTTTTACAATCAACGCAGATTATAAATGAGACTGCGAGAAGTTCGGCTGCGGCGTACAGAGTTTGCTCAGTTTGGGGCTTGCGTTCGAAGAAAATTAGGGCTTCAAACCATTATCATCGCGACGATATTATTCAGGCATACGCATCAAGTAGGTATCCGAATCGCTGTTGATTTATTTTAATACGTGGAAGCGAGCATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTTACCTCGTGAATGAGCTTCTCGTCAACAGTCTTGCGAACAGCCGTACATTTCAAAGGTTTGCTGTTAGGACATCAAAGCAAATCGAGGATATATCTACCAGGGCTGCACAGAAGAAGCAAGAACTTGCAGATCAGGTGAAAGATCTCTCCAAAAATTTCGAGTCTTTCAAGAACCAATAATGCAGAACAGGACGTGTTACTGCAACATGATGTAAATCCTATTCCAAAATTCCAAATCCATTTTGCTCTCTTGTAGACATAATATTACAGCTTAACTTATAATAGTCGCAAAGTGTCTCAAAAATTGTTTGCAGCCTTCTCTGGCTTTTCTGTGTGTTGAATAATTGTGACGGTAGATTTTGATCTGTACTTCTACTTGAATCCTGTTCATCGGTGCCTGTGTTTGAAGCCAGGATATGACCATTTGCCTTTGACGTGTATGCACTTGCATGCTTCTGTAACTTGTTATCTTTGCTCCATTAACACAATTGGATTGGATCAGATTTTTAAACGCCA

Coding sequence (CDS)

ATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTTACCTCGTGAATGAGCTTCTCGTCAACAGTCTTGCGAACAGCCGTACATTTCAAAGGTTTGCTGTTAGGACATCAAAGCAAATCGAGGATATATCTACCAGGGCTGCACAGAAGAAGCAAGAACTTGCAGATCAGGTGAAAGATCTCTCCAAAAATTTCGAGTCTTTCAAGAACCAATAA

Protein sequence

MAGGNFMHRVVSYLVNELLVNSLANSRTFQRFAVRTSKQIEDISTRAAQKKQELADQVKDLSKNFESFKNQ
Homology
[Close]
BLAST of Tan0000455 vs. NCBI nr
Match: XP_022949523.1 (uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 uncharacterized protein LOC111470102 [Cucurbita maxima] >XP_023539748.1 uncharacterized protein LOC111800336 [Cucurbita pepo subsp. pepo] >KAG6596336.1 hypothetical protein SDJN03_09516, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027888.1 hypothetical protein SDJN02_09065 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.5 bits (319), Expect = 4.6e-26
Identity = 66/71 (92.96%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MAGGNFMHRVVSYLVNELLVNSLANSRTFQRFAVRTSKQIEDISTRAAQKKQELADQVKD 60
          MAGGNFMHRVVSYLVNE+LVNSLANSR+FQRFAVRTSKQIEDIST+AAQKKQELA+Q+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNFESFKNQ
Sbjct: 61 LSKNFESFKNQ 71

[Close]
BLAST of Tan0000455 vs. NCBI nr
Match: XP_038903248.1 (uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903250.1 uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903251.1 uncharacterized protein LOC120089892 [Benincasa hispida])

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-25
Identity = 65/71 (91.55%), Postives = 70/71 (98.59%), Query Frame = 0 

Query: 1  MAGGNFMHRVVSYLVNELLVNSLANSRTFQRFAVRTSKQIEDISTRAAQKKQELADQVKD 60
          MAGGNFMHRVVSYLVNE+LVNSLANSRTFQRFAVRTSKQIE+IS +AAQKKQELA+QVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRTFQRFAVRTSKQIEEISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]
BLAST of Tan0000455 vs. NCBI nr
Match: XP_023527736.1 (uncharacterized protein LOC111790863 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 64/71 (90.14%), Postives = 70/71 (98.59%), Query Frame = 0 

Query: 1  MAGGNFMHRVVSYLVNELLVNSLANSRTFQRFAVRTSKQIEDISTRAAQKKQELADQVKD 60
          MAGGNFMHRVVSYLVNE++VNSLANSRTFQRFAVRTSKQIEDIS +A+QKKQELA+QVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVIVNSLANSRTFQRFAVRTSKQIEDISNKASQKKQELAEQVKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]
BLAST of Tan0000455 vs. NCBI nr
Match: XP_022935686.1 (uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothetical protein SDJN03_20467, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017215.1 hypothetical protein SDJN02_19077, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 0 

Query: 1  MAGGNFMHRVVSYLVNELLVNSLANSRTFQRFAVRTSKQIEDISTRAAQKKQELADQVKD 60
          MAGGNFMHRVVSYLVNE+LVNSLANSR FQRFAVRTSKQIEDIS +AAQKKQELA+QVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]
BLAST of Tan0000455 vs. NCBI nr
Match: XP_022983627.1 (uncharacterized protein LOC111482182 [Cucurbita maxima])

HSP 1 Score: 123.6 bits (309), Expect = 6.7e-25
Identity = 64/71 (90.14%), Postives = 69/71 (97.18%), Query Frame = 0 

Query: 1  MAGGNFMHRVVSYLVNELLVNSLANSRTFQRFAVRTSKQIEDISTRAAQKKQELADQVKD 60
          MAGGNFMHRVVSYLVNE+LVNSLANSR FQRFAVRTSKQIEDIS +AA+KKQELA+QVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]
BLAST of Tan0000455 vs. ExPASy TrEMBL
Match: A0A6J1I5H8 (uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-26
Identity = 66/71 (92.96%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MAGGNFMHRVVSYLVNELLVNSLANSRTFQRFAVRTSKQIEDISTRAAQKKQELADQVKD 60
          MAGGNFMHRVVSYLVNE+LVNSLANSR+FQRFAVRTSKQIEDIST+AAQKKQELA+Q+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNFESFKNQ
Sbjct: 61 LSKNFESFKNQ 71

[Close]
BLAST of Tan0000455 vs. ExPASy TrEMBL
Match: A0A6J1GCB5 (uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC111452848 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-26
Identity = 66/71 (92.96%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MAGGNFMHRVVSYLVNELLVNSLANSRTFQRFAVRTSKQIEDISTRAAQKKQELADQVKD 60
          MAGGNFMHRVVSYLVNE+LVNSLANSR+FQRFAVRTSKQIEDIST+AAQKKQELA+Q+KD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQMKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNFESFKNQ
Sbjct: 61 LSKNFESFKNQ 71

[Close]
BLAST of Tan0000455 vs. ExPASy TrEMBL
Match: A0A6J1F5E7 (uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC111442470 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 0 

Query: 1  MAGGNFMHRVVSYLVNELLVNSLANSRTFQRFAVRTSKQIEDISTRAAQKKQELADQVKD 60
          MAGGNFMHRVVSYLVNE+LVNSLANSR FQRFAVRTSKQIEDIS +AAQKKQELA+QVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]
BLAST of Tan0000455 vs. ExPASy TrEMBL
Match: A0A6J1IZW4 (uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-25
Identity = 64/71 (90.14%), Postives = 69/71 (97.18%), Query Frame = 0 

Query: 1  MAGGNFMHRVVSYLVNELLVNSLANSRTFQRFAVRTSKQIEDISTRAAQKKQELADQVKD 60
          MAGGNFMHRVVSYLVNE+LVNSLANSR FQRFAVRTSKQIEDIS +AA+KKQELA+QVKD
Sbjct: 1  MAGGNFMHRVVSYLVNEVLVNSLANSRAFQRFAVRTSKQIEDISNKAARKKQELAEQVKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNF+SFKNQ
Sbjct: 61 LSKNFDSFKNQ 71

[Close]
BLAST of Tan0000455 vs. ExPASy TrEMBL
Match: A0A6J1CWK8 (uncharacterized protein LOC111014959 OS=Momordica charantia OX=3673 GN=LOC111014959 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 64/71 (90.14%), Postives = 70/71 (98.59%), Query Frame = 0 

Query: 1  MAGGNFMHRVVSYLVNELLVNSLANSRTFQRFAVRTSKQIEDISTRAAQKKQELADQVKD 60
          MAGGNF++RVVSYLVNELLV+SLANSR+FQRFAVRTSKQIEDIS +AAQKKQELA+QVKD
Sbjct: 1  MAGGNFINRVVSYLVNELLVDSLANSRSFQRFAVRTSKQIEDISNKAAQKKQELAEQVKD 60

Query: 61 LSKNFESFKNQ 72
          LSKNFESFKNQ
Sbjct: 61 LSKNFESFKNQ 71

[Close]
BLAST of Tan0000455 vs. TAIR 10
Match: AT5G01350.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 77.8 bits (190), Expect = 3.9e-15
Identity = 37/67 (55.22%), Postives = 54/67 (80.60%), Query Frame = 0 

Query: 3  GGNFMHRVVSYLVNELLVNSLANSRTFQRFAVRTSKQIEDISTRAAQKKQELADQVKDLS 62
          GGNF+ RV+SY+ NE +VN LANS  FQRFAVRTSK+IE++S  AA+ ++++A Q+++ +
Sbjct: 4  GGNFIARVISYVANEFIVNGLANSHAFQRFAVRTSKRIENLSKMAAENREKVAQQMEEFA 63

Query: 63 KNFESFK 70
          KN +S K
Sbjct: 64 KNIDSTK 70

The following BLAST results are available for this feature:
BLAST of Tan0000455 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0000455 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949523.14.6e-2692.96uncharacterized protein LOC111452848 [Cucurbita moschata] >XP_022971350.1 unchar... [more]
XP_038903248.11.8e-2591.55uncharacterized protein LOC120089892 [Benincasa hispida] >XP_038903249.1 unchara... [more]
XP_023527736.12.3e-2590.14uncharacterized protein LOC111790863 [Cucurbita pepo subsp. pepo][more]
XP_022935686.12.3e-2591.55uncharacterized protein LOC111442470 [Cucurbita moschata] >KAG6580465.1 hypothet... [more]
XP_022983627.16.7e-2590.14uncharacterized protein LOC111482182 [Cucurbita maxima][more]
BLAST of Tan0000455 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I5H82.2e-2692.96uncharacterized protein LOC111470102 OS=Cucurbita maxima OX=3661 GN=LOC111470102... [more]
A0A6J1GCB52.2e-2692.96uncharacterized protein LOC111452848 OS=Cucurbita moschata OX=3662 GN=LOC1114528... [more]
A0A6J1F5E71.1e-2591.55uncharacterized protein LOC111442470 OS=Cucurbita moschata OX=3662 GN=LOC1114424... [more]
A0A6J1IZW43.2e-2590.14uncharacterized protein LOC111482182 OS=Cucurbita maxima OX=3661 GN=LOC111482182... [more]
A0A6J1CWK81.2e-2490.14uncharacterized protein LOC111014959 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
BLAST of Tan0000455 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G01350.13.9e-1555.22unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 44..71
NoneNo IPR availablePANTHERPTHR34966OSJNBA0043L24.15 PROTEINcoord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0000455.1Tan0000455.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding