Tan0000383 (gene) Snake gourd v1

Overview
NameTan0000383
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG07: 73881228 .. 73881833 (-)
RNA-Seq ExpressionTan0000383
SyntenyTan0000383
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCTGCAGAACGAGGCTTCAACGAGGAGGGAGAACCAAACGAGTACTCATGAAGGTTGGCGTCCTACTCCAGAAGGATGTTGGAAAATCAACACTGACGCCTCCTAGAACGAAGCGACCTCGCAAGGGGGATTGGGTTGGACAATTCATGATTTGGGTTCAATCATCTGTGCAGGAATTAAAAAACTCAAATGTCAATGGCCAATTAAATGTCTCGAAGGGAAAGCCATCCTTGAAGGGCTTCACATTTATCTGAAGATATCCAAGGAACATGCACAACGTTTGTTTGTGGAATCCGACTCTGTAGAAGTAATTAAGGTGCTAAATGGTGAAGCGCTCGACCTCTCCGAATTGAATGACATCGCAAACGACATTCACTCAATAGCTGGCGATGTTGGTATAATTTCCTTCACCAAATGTCCCAGATCGGGCAATCTATCGACCCATAAGTTGGTGAGAGTAGTTGCTTTCAATTTCCTTTTGGAAGAAAACGCCTCTTCTTCTTCTGTCGAAAAAGACTCTCTCTTTTGGATTGTAAATATCCCCTTTTGGGTGTATTCCCTCGTTCAGGAAGTTGGTGTACTGGTTTCCGTTGTCAATTAA

mRNA sequence

ATGCACCTGCAGAACGAGGCTTCAACGAGGAGGGAGAACCAAACGAGTACTCATGAAGGAATTAAAAAACTCAAATGTCAATGGCCAATTAAATGTCTCGAAGGGAAAGCCATCCTTGAAGGGCTTCACATTTATCTGAAGATATCCAAGGAACATGCACAACGTTTGTTTGTGGAATCCGACTCTGTAGAAGTAATTAAGGTGCTAAATGGTGAAGCGCTCGACCTCTCCGAATTGAATGACATCGCAAACGACATTCACTCAATAGCTGGCGATGTTGGTATAATTTCCTTCACCAAATGTCCCAGATCGGGCAATCTATCGACCCATAAGTTGGTGAGAGTAGTTGCTTTCAATTTCCTTTTGGAAGAAAACGCCTCTTCTTCTTCTGTCGAAAAAGACTCTCTCTTTTGGATTGTAAATATCCCCTTTTGGGTGTATTCCCTCGTTCAGGAAGTTGGTGTACTGGTTTCCGTTGTCAATTAA

Coding sequence (CDS)

ATGCACCTGCAGAACGAGGCTTCAACGAGGAGGGAGAACCAAACGAGTACTCATGAAGGAATTAAAAAACTCAAATGTCAATGGCCAATTAAATGTCTCGAAGGGAAAGCCATCCTTGAAGGGCTTCACATTTATCTGAAGATATCCAAGGAACATGCACAACGTTTGTTTGTGGAATCCGACTCTGTAGAAGTAATTAAGGTGCTAAATGGTGAAGCGCTCGACCTCTCCGAATTGAATGACATCGCAAACGACATTCACTCAATAGCTGGCGATGTTGGTATAATTTCCTTCACCAAATGTCCCAGATCGGGCAATCTATCGACCCATAAGTTGGTGAGAGTAGTTGCTTTCAATTTCCTTTTGGAAGAAAACGCCTCTTCTTCTTCTGTCGAAAAAGACTCTCTCTTTTGGATTGTAAATATCCCCTTTTGGGTGTATTCCCTCGTTCAGGAAGTTGGTGTACTGGTTTCCGTTGTCAATTAA

Protein sequence

MHLQNEASTRRENQTSTHEGIKKLKCQWPIKCLEGKAILEGLHIYLKISKEHAQRLFVESDSVEVIKVLNGEALDLSELNDIANDIHSIAGDVGIISFTKCPRSGNLSTHKLVRVVAFNFLLEENASSSSVEKDSLFWIVNIPFWVYSLVQEVGVLVSVVN
Homology
The following BLAST results are available for this feature:
BLAST of Tan0000383 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0000383 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0000383 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0000383 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 21..114
e-value: 1.9E-6
score: 27.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0000383.1Tan0000383.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity