Tan0000348 (gene) Snake gourd v1

Overview


Name	Tan0000348
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	50S ribosomal protein L27-like
Location	LG08: 66242255 .. 66252263 (-)
RNA-Seq Expression	Tan0000348
Synteny	Tan0000348

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCGTGAACTGCCAGCCGAAAGAATCCCAAAGGTCTCGACTTCTACCGTTCGCGAGGACTGCACGCTGCCGATCAGAGGGTTGCCGCCGGCCGCCTTCCAGCACTCCGAGCTCGCAACCTCGACACCTGCAGACGCTGCAGCAAGCGCCTCTGAACGACGACGCCGCCGGAACTCACCGATCCTTGCAGGGTCGCCGTCGTCTGCGGGCTTACACACGTTCGCCAGCCGGAAATCAGTCGAGCTTTGTAGCGCCGCCACCGCCTTGAACTCGCGCGTCCGCAAATCAGAACTCGTCGGCGTTCCCGAGCTCCTCACGTTTTACCACCCAGTTCTCGTCCCCTCTCGGTTCCAGTCACTATTCCGTTGTCGTTCGCGCCTTCCTGCCGTGCCGGAGACCTTTGGAAGTTGAACCTTCAGCCAGGTGAGCTTGCTCGATTCCTTTCGGATTGGGAGAGAGTTACACACTGATTAGTTGAGTTGTTAGGTGTTATTTGGAGATTTGAGTTTACTGTTTAAGCATAACCTTTAGGGACCGAACGTAGTGCAGAGTCGAGAGCCAAAGATTGAGGTGAACTAAAGAGTGTTAGACTTACACCTTGAGCTTGAGGTAAGCGGGACAAGAATTTTAAGAACTGTAATTAAGTATGTATACGATTATGAAAGTGGAGTTATACTCGAGTGTAATTTCGGAGGTTACCTGTGAAACAGGTCCTTCAAAAGAAGCGTATTCCAGGAACTAGGATTAAAGTTTTGAGTTGGAATCTAAGCTAAGGTAAGGGACCTTGTGCCGAATTTTCTAAAATGGAATGGAAAACAAGTAAATTTTATTATTTTATTTCAGAAGTATTCCCTCATTTCTTTTGTGAAATTGATTATGTCCTAAAGTACTATTTCAGTTATGTTATGAAAGTCATGCCATGAATGTTAGTCATTGTCTGTCCATGATATGTGCATTAAAATCATGATAGGTAAGGGACCTCATGCATTGTGTGTATGTCATGAAACGTTAGTAGAGGAAATTTGTGGTTAATTGGTCTCCTGAGTTTTTTTTATGCATGGTCAAACATGCATTAGAGACCCTATGGAGTCACTTATAGAGAGTGCAGTGAGGACTCAAAATATATAAGGGTTTGTGAGGGACTCAACACTTATAGGGGTCTGTGAGGGACTCAAGCTATAGAGGTCTGTGAGAGACTCAAAAATGAAATGACTTAGGGTGACCAATTGACCACTTAAACTAAAAGAAAGTCATGTATTTCAGTTATGATTAATATGAGGAAGTTCTAGGTCCCACATGTGACGGTTTTATGCGAAGTTTAAAAGTCACGATTTCCGCATTTTCTTCACAGCTAATGTTGATGTTAAAAGAACTTTGATTTATGAAATATGTTTACAGGATTTTAAGTAGGCCAACTCAGAAATGTTATTTCAAATGTTTTGACGTTTTTGGGATCCCTAAAGATATTTTAGAATGTTGCAGTTTAAATTGTTTTACTTATTTGCTGGCCTAAAAGTGCATGCATTTTTAGTAGCGTCCCTAGGATTTATAGTTAAAGAAAAGTAGGGGCTTTACACAATTAGTTTCAAAACTCTCAAATACCAGCCCATGGGGATGAATATAAGGAAAGAAATCTAAATAAGGGAAACAACTAACGGTAAACAATTTAAAAAAAAAAATCACCAAAAAGAATTCTGGAAGATTACTTCAATCATGGGATGTGATTGATTTGTGAGAAATAAAATAGAATGAGCACCTTTGGACAATTTAAATCACACACAACACTTGCTATAAAAGGCGTCAATCAGTTGGTGATGGGGCTTGAAGATCGAGAAGATGCAGTTAAAGAAATCTTCATTTTTTGACTATAACCGGCTGAGTTATAGCATTTTGTAACCAAATGAATTTAGGGATTTCACTTGTTAGCTCCAGCTCATGATTTTGTTTTTTGATTTGTCAATTTTGAAGATTTGCACGTGTTGGGGTTGCTTGGTTGGGCTTATCTTGGGCCGCAATTGTTGATGTGTTTGGGCCTTTACATCTTTTGTTCATAACACTAGTTATCATTTTATATGCAGTTGTTGGTGTAAATGAGTCATCATTTCAATTTTCTTGTGATTCTTTAGGTTTGTGTTTGTTGTTTGTTTCTGTTTTGTGTTGTTTTCTTTGGTGAATTCTGATATATGATTATTTTATTTGATTTGATTCAGTAAAGTGATTGCAAAAAAAGAAAAGAGATTTTTCTATAAGAATGCAATGTTAATAGATATAGTTGATCATTGGATTTCAATGATTTTTGTGCTCTTTGCCTTCTTAACCCCCCCCCAAAAAAAAAAAAAAAAAAAAATCAAACAAGTTTCTGTTTCTTCTCTTTTTTTTTAAGGGCTCTTTTTTCAAGCTTTCTCCTGTTCTCAAGCAAAGGTGCACACACACAAGAGGTAAAATTTCTGCTCGATATCTCTCCTTCCGTTTCTCTCTTCAATGCTCTGTTTTCAGCTTTCTCTTTGTTCATTTGACTCTCTGTAATATTATTTTGAAATTTCCATGAGTATTTTGATTATTCAGCATTCTCTTTGAGTTTGTGCTTTTCTATGTCCAATTTCTGCTGATGTTGGTGTTTTGTTGGGTTTTGGTACGTGTTTTGTGTATTCAGTGACTGATTGAGGAAAATTTATGGTGTTCTGTGTATTTTTTGTTCTGGTTTATGCTGTTTTTTTGTCTTCTTCCTAGAATTTCTTGCTTCTTTATTTTCTTGGTACAAGTCCCAAGTGGAGCTTCTTTTTCTTCATTTGGTTGGCCTACGATTTACGCTTCTCTGCCTTTTAGGGCAATTTTTGGGGTTCTTTCCATGGTGACTGTACTGGCTGTGATGGTTCCAACCATTCTTGTCACTTGGATCACCATTGTTATGTTGCTTTTACTTCTTTGGGAAACCTTGGAGGGCGTTGGTGGTGGAGGGGAGGAAGATTACTAGAGAGATTTTTGGAGTTGTGGTTAAGATTTTGTTAAAGGGAATTTGGTGGCTATTGTTTATGCTATTTTGAGATACTTTGCTTTGTTTAGGAAGACTAATAAGAGTTACAGTTGTTGAATCTAGACTGACTTTTGGATTTTGATGGCTAATTTTGGTGGAATGGAGAAAGGATTTGGGATTTTGGATCAAATGGGTATCTGAGATTTCTGATAAGGGTTTGATTTGGATCATACGTGTTGGTTTTCTGACATTTTGTGATGGTGGTGTTTCTAGATTTGGGGCAATAATAGTTTAGATCTTTCTTGTAACTGTAGAGTTGATGGGTTTATATGGATTGTTACTTTGTCTTCCATTCTTTTTGGAATGGAGTTTGTCTCTTGAGAAATGCTTCATAATATTGAGATTTAGAGTTCTCTCTCTCTCTTTTTTTATTCCCTTTCTGTAATGGATGGAATACAGGGAGTGTATACTCATTCAAGTAATGAGATGGACATTTTTAGAACAAGGGTGGTCTGGAATTGTTCTAATGATTGCCATTGAACTATTAGATACGAAGATATGGTGAAAATGAATGAAAGGTGAAAGAATATATTACTTTTCTGGCTTCTTTCTCCCCGCTTTTGTTTATATTTCTTAGGTTTGCTTAGACATTGTAGATCAAATTTGGGCAACAATGGAAGGATGAATACAATCTTACTATTGTTTTTAATCGCTTTTTATATGTTTTTTTAATGCATGTTATATCCTTTTATATTATATATATTAAATTATATTCAAACTATATTAAAAAAAAAAAGAAACCAGAAAAAATAGTTATCAAATAAGTTTCTGTTTCTTCTTTTTTTCTAAGAAATAAGAGAAAAAAAAATAGTTATCAAACATATTCCTATTTCTAGATGTAAAAAAGAGGAAACACGAAACTGGAACATGAAATAGAAAATAAGAAATAAGAATGTTATCAAATGGGGCCAAAGAAACTCCAAAATCCCTATATTTTTCCCCAAATGGAAAAATCTAGTAGCTCCACACAAAGAAAGAATTTATAGAATTTTACACGTAGCTCTACACTAAGAAAGGGGAGTCCTACTTCCTTTCGAGAATACGTGGTAGGGCTTTATCACACAAGAGAAAATAGTAGTTATGCACTGAGCAAGAAATACAATTATTAGTCATCGATTAGAGGGCGTTTAAATCTCTTAGCCCGGTTGGTTTCATTGCTGAACTTTTAAAAAACTCTAGGAACATCATCAAACATAATCTTAAGATGGTGTTCCATGCCTTTTTTGAAGTTTGACTCTTTTATGCTAGTTTCAACGAGACTTATTTGCATTATTCCCAAGAAACGAGATGCCAAATTCATAAATGCCCACAAGCCTATCATTTATCAATCTTATTCTGTGTGCTCATAAGATTGTAGCTAAAGTGCTTTTGAAAGGACAAGCATGCCCTCCCGTACACTATTATGGAGTTTCAAGCAACTTTTGTGAAAGGTAGACAAATATTAGATATCTTCCTCATTGCTACTAACAAGTCTATTGATTAATGGAAATAGAGAAAAAGGGAGAAATCAATAGGGACTTCCTCGATTCTATTCTAAATGTAAAAGGTTTTGATGATAAATGGAGGAAATGAAGCCAAACGTGTGTATCTATTGAAAATTTATCCATTATCATTGATGGAAAACCTAAAAATCATGGTCTCTCCCATTTTTTTTTTATCATGGCTAACTTAATATTCGCAGGCTCATCTCCCATGGGGCGTCACACAGTCACGTAGAAGGATACGAGGTGAGAAACTCATCTTTGTGCCTTAACCCTTAACAATTTTACAAATGAAGCTATTTTTTCTCCACAAGTGATAAAAGAAGCCTAGATAATCTCTCCACAAATGAAAATCATTGGCCTACCTTGTGTCTTCAGCATTATGGAACCTATTCTTCCATATGAACCTTACAGAAGAAGGATTCTAAGAGTAGCTAACCTTGGGCAACATTAAAGGAATTGCCCTCTCTAGCAAACTAGACTCATTGTTGAGGACCTCTGATTCAATCTAGATAAATTCTCTACAAGGATCATTTGGAAGAATAAACATCCTAAGAAGGTGAAGATATTTATTTTTGAAAAGTGCTTCTTAAAAGTATCGACATTGTTGAAAAGCTTCAAAGAAATTGCCAGCCACTGCTTTCTTCCCAAATGTGTGTGCTATGTGTAGTAGAAATGAATCCTAAGACCTCTTTTCCAGCCGCTTACAAATTTTGGGCTAATCATTTTGATCTTTAGGGTATTCCTACTCTTTTGGGTCTCAAAGAAGCAAATAATATTCTCTCTCCCCTCCTTATCACCCTTTCAAGACAAATGCAAGAATTATGTGGCTTAATTTCGTTAGAAGCATCCTCTGGTACAATTGGATTGTAAGGAATCAAATGCTCTTTATTGGAAGAGATTGAGGTTTCCATTTTCGGATGGTGTCATTTCTACTTGTAAACTTAGCAAGCGTTTTTATAATTACTCTATTTTCAGTTTTTTTTGGTTAATGAGAGAGCTTTCATATAATCTCCTTTATGTGTGGGGTACCCATGATGTATTAGCATTCCATAATTTAGGCCAAATTATCCAAAGAAGGCATGAGTTTCAACTTTAAAGGCTAAGTTTGAGCCCTGAGGTGCAAGCCTCAAAAGCCTTTCTAAAACATTGATATAAAAGAAAGATCATGAATTTCTATTCGGATGGTTGGGAGTATTAACCACATTTTAAATTGAAATCTGATGTCTATACCCTGTGCTTGGGGGGTTTGAAGCAGGTAATTTGAGACAAAGAAATGAAGCCTGAATGGCAAATAAATTTGCAATATCCCAAGGACCCCAATCTTATTTGGCACAAAGAGGTCCCTGGCATTCATGGGCAAAAGGGAGGGGAAGAGTGGTTCACCTGAAAGGAAAAATCGAATTAAGGATTTTTGCCCATGAATGGGGTCTTTAAGGATTTCTCTCTCTCTCTCTCTCTCTCATTAATGTGGTACCTTGGTATCCATTGGGTTGGGTTGGATTGGATTCTTTTTTAGGAGAATCGAAATTAAATATATATATTCTCCACTCTCCTTTCAGATTCTCTTCTCTCCAAATCGCGACTCTCAGTGTTCGTTCCATCTCCGAACGATTTCTCTATTTGTTTCTCTCCCTTTCTCAGTTTGCCGCTGCTGGTCCGTAGTCCGTTGGCATCTCTTGCCGCTGCCTCTGCTCGTCTTCTCTCCGAAGCCCGAATCCCTTGCCATCGCCGCCACTCATCTCTTTGAAGTCGTTGTCGTCGTTGTCGTCGTTCATCTCCAATTTCTTCTGCCTAACGTTCATCTCCACAACCTGCATCTTCTATCTTTCACTTCACTCTTCATATTGAGTATATTTAGTTTAAGTTGTGATGTGTGTTTCTTTTCTCTATCTACAGAACAACATGGTGTGTGTTTTTTTATGTATCAAAGGAAGAGAATAGAAAAAAAAAAAGAGAAAAGTACAAAAAAACATGGAAGTGTAAACTCTGTAGAGTTTGAGTGGTGAGGTGCTGCTGATGTTTATAATATACAAAATCTTTCTTCCACTTAGAATTTCAACTCAATTTGTAAAATGCCCCCACATGAAGTTGACAGAAATTCTGAAATTATTCTATACTTATTATTGAGGAAGAAAAAATCGATTTTTCTAGCTTATGGGATGTCATTTTTATGGAAGGAAAAAAAATCCGGTGACCTAACCCGATCCAACCCGAAAATATAAGGGTTAGGTTGGTTGCTCTCATAAATAGAGTTGAGCGGGTTGGAGGATTGACGGGTTGGTCCATAAATTCACCCTAACCCGACCCAACCCAACCCAACCCATGTACACCCCTACTTTCAAATGATCCTTGTTGAGAATTTTGGTCACTGAGGAGAGATTTAACATGGAAAAGTCGGATTGTATTAGAAGTTCTCAACAATGAGTCTAGTTTGCTAGAGAGGGCAATTCCTTTAAAGTTGGCCAAGGAGAGCTATTTTTTTTAGTACATCAACAGTTGGGGGTGGGGGGATTCGAACCCATGATTTCTTGGTCATGAGTCATACTTGATGCCGGTTGAGTTATGCTCTTGTTGGCGCCCAAGGATAGCTACTCTTAGAATCCTTCTTCTGTAAGGTTCCTATGGAAGAATAGGTTCCATAATGCTGCTGAAGACAAAAGGAATCAAGGAAGCCCCTATTGTGGGCTCTTCTTTTTGTATGCCCTTGTATTCCTTCATTCTTTCCCAATGAAAGATTAAGTTTATTCTTTAAAAAAAGGAGTCAAGGAAGCCCCTATTGAGTTCATCAAAAACCTTCTCAAGGTCAAGTTTCACGATTCCTCCATTTTTCTCAATTTCCATTGATCAATAGATTTGTTAGCAATGAGGATGATATCTAATATTTGTCTACCTTTCACAAAGGTTTCTTGAAACTCCATAGTAGTGTACGGGAGGACATGCTTGTCTTTTTCCAAGCATTTTGGCTACAACCTTATGAGCACACAGAATAAGATCGATAGGTGATAGGTTTGTGGTCATTTATGGATTTGGCATATGGTTTCTTTGGAATAATGCAAATAAGTCTCGTTGACTTGAGACTAGCATAAAAGAGTCAATTTTCAAAAAAGTCATGGAACACCATCATAAGATTATGTTCCATGATGTTTCATGAGTTTTTCAAAACTTCAGCAGTGAAACCAACCAGGCTAGGAGATTGCCAACAAGAGCATAGCTCAACTGGCATCAAGTATGACTCATGACTAAAAGATCATGGATTCGAATCCCCCACCCCCCAATTGTTGATGTACTCAAAAAAAAAAAAAAAAACCAGGCTAGGAGATTTATTTGCTCTCTATTTGATGACTAATAACTGTATTTGTTGCTCAGTGTATAGCTACTATTTTCTCTTGTGTGATAAAGTCCTGCCACATATTCCTGGAAGGAAGTAGGAATCCCCTTAGTGTAGCGCCGCTTGTAAAATTCTACAAATTCAATATTGGAATCACTTTGTAATTTTGAAATACTCCATTTTAGGTCTTAATAATTTTATTTTAGCTTAATAGTGCTAGTGAGAATTATATGATGGAACCCGGACAACAAGAATATTATTGAAATATAAAAGATAGAAGAAGAACAACAATATAACTCAATACTTGGTCCCTCCTTCTCTTAAGTATTCTTACTCAAGCACCACTAAACAATTGCTTGCTCTCTCTCTCCCCAACCAATCAATTTGTAATAAACTCCTAATAATTAATAACAAACTCCTTGGGCTAATACTTATATGCCCTTAGGCCTATATACCTTCGTAATGTTTCCAACTGTCTAATGCTTCCTAGGAAGTTCCTAATATTATAATGATTAAAATCACAAGTATATTGATTTAATAGTTTTATAATTACTACATGTTTGGTATGCAATCCTTTTTTTAATATACAAATTGGTATGTGCTCTTGCAAGTGCTTTCTTTAAGCATTTGAATGAAATTTTTTTTGATCCTTTCATTTTGGTTTGCAATATCTATATGCTTGTTTCTTGAATTCGTCTTGTTAACTATGATGGATTTAAAAGATGCAATCTTTTGAAAAACTTGTTGCAGGTTTTTTTTTTTTTTTTGGTTCCTAAGATGGTAAATTATATGCTTTTTATTAGAACATGTTCATTTGAGCTGGTTGAACCAGATTATGTATGTTTGGTAGACTTATTAATTGGAATTTGCCCCTTTGTACTTGTTGAACCAGACTATGTTTTACATGTTCTAAGTGCTTGCAACATATTTCCAGGATAGGCTACATTAAATACAGTCATGCTTAATATTGCGACCACATTTTGCAAGCGATTGAATGTCAAGGATTTGGTTACCAATGTTCCTGTATATAGAAGTTTTAATGGTAAGGATGGTTCATCTAGAACAAGTTGTGCTTGTCATGTTACTTTTGTCTGCATGTTTGATGATTACAATGTTTGTTAAGAGTCAGATGGAGCTGTTGTAGGGTTAAGCTTCTTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCAACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTGAAGAAATTTGGTGGGGAGGTGAGTGCAAGATTAAAAAATTGAATCACATTATCATGAACTGGAACTCAAATTTCTTTTGATTGAAACTGTTTTGTTGTGAACTTTGTCACGTTCTTCTGGATACAGAGAGTTATTCCTGGTAACATTATTGTTCGTCAACGGGGCACCCGTTTCCATCCAGGAGATTATGTCGGGATAGGGAAGGATCACACACTTTTTGCTATGAAAGAAGGTTGTGTGAAGTTCGAAAAGCACAAGCTAAGTGGACGTAAGTGGGTGCACATTATACCAAAGGAAGGACACATTGTTCATCCTGTGTATGCAACTTCTTCTACTTCTCCAGAATTGAAGTCAACGACATGATATCAAGCTCTCTTTCTTTATTTAGATGTTTGAATTCGTTGGTGAACACGATAATGGATGGTAGTAAATTTTCATGGTCTTAGCAAACTCTTGACTACACTTGATCACCAAGTAGGGTAATAAATTGTCTGCAGATGAAGATGATGGTTCCTCCTTGCTTGATGCACTTAATCAAAGTAAAATCACACAATGAAGAAAGAATTTCTTTCTTTTAAGTATGGGTGCATTGGACTGTGACGGATAATAGGTAGCTCTGAATTCGGAGTCTTCTTTCAACCTTTTGCTCTGTCGGATAATAGGTAGCTCTGAATTCGAAGTCTTCTTTCACCTTTTTGCCCTCCCTGAAAATTTTTAATTGGGGATATTTCTTAATTGATATACCAGTATGTAATTGCATGAGGATGTGTATCAACTCTAAATAACAGTTGACTGGTCGTGTCATGTGCACTAAGATGTTAAATCAGATTTGAAATTTGTGTTTGAGGTTTAGAAAGGTAATAAACATACACGGTTTATTTATGCATTTTTAAATTTGTTATTTATGTTGGGGTAACTTTATTCAAA

mRNA sequence

CCTCGTGAACTGCCAGCCGAAAGAATCCCAAAGGTCTCGACTTCTACCGTTCGCGAGGACTGCACGCTGCCGATCAGAGGGTTGCCGCCGGCCGCCTTCCAGCACTCCGAGCTCGCAACCTCGACACCTGCAGACGCTGCAGCAAGCGCCTCTGAACGACGACGCCGCCGGAACTCACCGATCCTTGCAGGGTCGCCGTCGTCTGCGGGCTTACACACGTTCGCCAGCCGGAAATCAGTCGAGCTTTGTAGCGCCGCCACCGCCTTGAACTCGCGCGTCCGCAAATCAGAACTCGTCGGCGTTCCCGAGCTCCTCACGTTTTACCACCCAGTTCTCGTCCCCTCTCGGTTCCAGTCACTATTCCGTTGTCGTTCGCGCCTTCCTGCCGTGCCGGAGACCTTTGGAAGTTGAACCTTCAGCCAGGGACCGAACGTAGTGCAGAGTCGAGAGCCAAAGATTGAGGTGAACTAAAGAGTGTTAGACTTACACCTTGAGCTTGAGGTCCTTCAAAAGAAGCGTATTCCAGGAACTAGGATTAAAGTTTTGAGTTGGAATCTAAGCTAAGGGCTCTTTTTTCAAGCTTTCTCCTGTTCTCAAGCAAAGGTGCACACACACAAGAGGATAGGCTACATTAAATACAGTCATGCTTAATATTGCGACCACATTTTGCAAGCGATTGAATGTCAAGGATTTGGTTACCAATGTTCCTGTATATAGAAGTTTTAATGATGGAGCTGTTGTAGGGTTAAGCTTCTTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCAACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTGAAGAAATTTGGTGGGGAGAGAGTTATTCCTGGTAACATTATTGTTCGTCAACGGGGCACCCGTTTCCATCCAGGAGATTATGTCGGGATAGGGAAGGATCACACACTTTTTGCTATGAAAGAAGGTTGTGTGAAGTTCGAAAAGCACAAGCTAAGTGGACGTAAGTGGGTGCACATTATACCAAAGGAAGGACACATTGTTCATCCTGTGTATGCAACTTCTTCTACTTCTCCAGAATTGAAGTCAACGACATGATATCAAGCTCTCTTTCTTTATTTAGATGTTTGAATTCGTTGGTGAACACGATAATGGATGGTAGTAAATTTTCATGGTCTTAGCAAACTCTTGACTACACTTGATCACCAAGTAGGGTAATAAATTGTCTGCAGATGAAGATGATGGTTCCTCCTTGCTTGATGCACTTAATCAAAGTAAAATCACACAATGAAGAAAGAATTTCTTTCTTTTAAGTATGGGTGCATTGGACTGTGACGGATAATAGGTAGCTCTGAATTCGGAGTCTTCTTTCAACCTTTTGCTCTGTCGGATAATAGGTAGCTCTGAATTCGAAGTCTTCTTTCACCTTTTTGCCCTCCCTGAAAATTTTTAATTGGGGATATTTCTTAATTGATATACCAGTATGTAATTGCATGAGGATGTGTATCAACTCTAAATAACAGTTGACTGGTCGTGTCATGTGCACTAAGATGTTAAATCAGATTTGAAATTTGTGTTTGAGGTTTAGAAAGGTAATAAACATACACGGTTTATTTATGCATTTTTAAATTTGTTATTTATGTTGGGGTAACTTTATTCAAA

Coding sequence (CDS)

ATGCTTAATATTGCGACCACATTTTGCAAGCGATTGAATGTCAAGGATTTGGTTACCAATGTTCCTGTATATAGAAGTTTTAATGATGGAGCTGTTGTAGGGTTAAGCTTCTTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGGTCAACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTGAAGAAATTTGGTGGGGAGAGAGTTATTCCTGGTAACATTATTGTTCGTCAACGGGGCACCCGTTTCCATCCAGGAGATTATGTCGGGATAGGGAAGGATCACACACTTTTTGCTATGAAAGAAGGTTGTGTGAAGTTCGAAAAGCACAAGCTAAGTGGACGTAAGTGGGTGCACATTATACCAAAGGAAGGACACATTGTTCATCCTGTGTATGCAACTTCTTCTACTTCTCCAGAATTGAAGTCAACGACATGA

Protein sequence

MLNIATTFCKRLNVKDLVTNVPVYRSFNDGAVVGLSFLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFAMKEGCVKFEKHKLSGRKWVHIIPKEGHIVHPVYATSSTSPELKSTT

Homology

[Close]

BLAST of Tan0000348 vs. ExPASy Swiss-Prot
Match: A9IM57 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rpmA PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-25
Identity = 57/83 (68.67%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 MKEGCVKFEKHKLSGRKWVHIIP 126
           + EG V F++ K   R +V +IP
Sbjct: 62  LSEGKVSFQR-KAGNRSYVSVIP 83

[Close]

BLAST of Tan0000348 vs. ExPASy Swiss-Prot
Match: Q6G507 (50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) OX=283166 GN=rpmA PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.9e-25
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 MKEGCVKFEKHKLSGRKWVHIIP 126
           + +G V F++ K + R +V +IP
Sbjct: 62  LSKGMVSFQR-KANNRSYVSVIP 83

[Close]

BLAST of Tan0000348 vs. ExPASy Swiss-Prot
Match: B4RZH4 (50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GSTKNGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH GD +GIGKDHTLFA
Sbjct: 2   AHKKAGGSTKNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTRFHAGDNMGIGKDHTLFA 61

Query: 103 MKEGCVKFEKHKLSGRKWVHII 125
           +K+G V+F+      RK+V I+
Sbjct: 62  LKDGKVQFDVKGPKNRKFVSIV 83

[Close]

BLAST of Tan0000348 vs. ExPASy Swiss-Prot
Match: Q2GCN3 (50S ribosomal protein L27 OS=Neorickettsia sennetsu (strain ATCC VR-367 / Miyayama) OX=222891 GN=rpmA PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-24
Identity = 55/82 (67.07%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           ATKK  GS+ NGRDS  K LGVKKFG ERVIPG+IIVRQRGT+FHPG  VG+G DHT+FA
Sbjct: 2   ATKKAGGSSSNGRDSIGKRLGVKKFGSERVIPGDIIVRQRGTKFHPGRNVGMGSDHTIFA 61

Query: 103 MKEGCVKFEKHKLSGRKWVHII 125
           MK G V F    L GR++VH++
Sbjct: 62  MKSGSVSFSV-GLRGRRFVHVV 82

[Close]

BLAST of Tan0000348 vs. ExPASy Swiss-Prot
Match: Q48NL3 (50S ribosomal protein L27 OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=rpmA PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-24
Identity = 53/84 (63.10%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GST+NGRDS+ K LGVK +GG+ +IPGNIIVRQRGT+FH G  VG+GKDHTLFA
Sbjct: 2   AHKKAGGSTRNGRDSEAKRLGVKMYGGQAIIPGNIIVRQRGTQFHAGYGVGMGKDHTLFA 61

Query: 103 MKEGCVKFEKHKLSGRKWVHIIPK 127
             EG +KF+     GR++V I+PK
Sbjct: 62  KVEGVIKFQVKGAFGRRYVSIVPK 85

[Close]

BLAST of Tan0000348 vs. NCBI nr
Match: XP_038877023.1 (50S ribosomal protein L27-like [Benincasa hispida])

HSP 1 Score: 285.4 bits (729), Expect = 2.8e-73
Identity = 132/148 (89.19%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYRSFNDGAVVGLSFLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVT VPVY SF+DGA  GLS LFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFAMKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTLFA+KEGCV FEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120

Query: 121 VHIIPKEGHIVHPVYATSSTSPELKSTT 149
           VH+IPKEGH++HP+YAT+STSPELK+TT
Sbjct: 121 VHVIPKEGHVLHPIYATTSTSPELKTTT 148

[Close]

BLAST of Tan0000348 vs. NCBI nr
Match: XP_022964702.1 (uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964704.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_023520403.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >XP_023520404.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >KAG7019178.1 rpmA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283.9 bits (725), Expect = 8.1e-73
Identity = 134/148 (90.54%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYRSFNDGAVVGLSFLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVY SF DG+  GLS LFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFAMKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA+KEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHIVHPVYATSSTSPELKSTT 149
           VHIIPKEGH++HPVYAT+  SPELK+ T
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTAT 148

[Close]

BLAST of Tan0000348 vs. NCBI nr
Match: XP_022970580.1 (uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharacterized protein LOC111469515 [Cucurbita maxima])

HSP 1 Score: 283.9 bits (725), Expect = 8.1e-73
Identity = 133/146 (91.10%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYRSFNDGAVVGLSFLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVY SF+DG+  GLS LFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFAMKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA+KEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHIVHPVYATSSTSPELKS 147
           VHIIPKEGH++HPVYAT+  SPELK+
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKT 146

[Close]

BLAST of Tan0000348 vs. NCBI nr
Match: XP_016901663.1 (PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribosomal protein L27-like [Cucumis melo var. makuwa])

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 132/147 (89.80%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYRSFNDGAVVGLSFLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVY SF+DGA  GL+ LFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFAMKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA+KEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHIVHPVYATSSTSPELKST 148
           VH+IPK+GH++HPVYAT+STSP+LK+T
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTT 147

[Close]

BLAST of Tan0000348 vs. NCBI nr
Match: KAG6583414.1 (hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 282.3 bits (721), Expect = 2.3e-72
Identity = 133/148 (89.86%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYRSFNDGAVVGLSFLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVY SF DG+  GLS LFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFAMKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA+KEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHIVHPVYATSSTSPELKSTT 149
           VHIIPKEGH++HPVYA++  SPELK+ T
Sbjct: 121 VHIIPKEGHVLHPVYASTDISPELKTAT 148

[Close]

BLAST of Tan0000348 vs. ExPASy TrEMBL
Match: A0A6J1I390 (uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 3.9e-73
Identity = 133/146 (91.10%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYRSFNDGAVVGLSFLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVY SF+DG+  GLS LFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFAMKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA+KEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHIVHPVYATSSTSPELKS 147
           VHIIPKEGH++HPVYAT+  SPELK+
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKT 146

[Close]

BLAST of Tan0000348 vs. ExPASy TrEMBL
Match: A0A6J1HP14 (uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC111464705 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 3.9e-73
Identity = 134/148 (90.54%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYRSFNDGAVVGLSFLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVY SF DG+  GLS LFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFAMKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA+KEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHIVHPVYATSSTSPELKSTT 149
           VHIIPKEGH++HPVYAT+  SPELK+ T
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTAT 148

[Close]

BLAST of Tan0000348 vs. ExPASy TrEMBL
Match: A0A5A7TXR2 (50S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00530 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.1e-73
Identity = 132/147 (89.80%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYRSFNDGAVVGLSFLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVY SF+DGA  GL+ LFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFAMKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA+KEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHIVHPVYATSSTSPELKST 148
           VH+IPK+GH++HPVYAT+STSP+LK+T
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTT 147

[Close]

BLAST of Tan0000348 vs. ExPASy TrEMBL
Match: A0A1S4E0A6 (50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.1e-73
Identity = 132/147 (89.80%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYRSFNDGAVVGLSFLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDLVTNVPVY SF+DGA  GL+ LFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFAMKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA+KEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHIVHPVYATSSTSPELKST 148
           VH+IPK+GH++HPVYAT+STSP+LK+T
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTT 147

[Close]

BLAST of Tan0000348 vs. ExPASy TrEMBL
Match: A0A6J1DS22 (uncharacterized protein LOC111023867 OS=Momordica charantia OX=3673 GN=LOC111023867 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 131/147 (89.12%), Postives = 140/147 (95.24%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYRSFNDGAVVGLSFLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIAT FCKRLNVKDLVTNVPVY SF+DGA VGLS LFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATAFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFAMKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVGIGKDHTLFA+KEGC+KFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALKEGCIKFEKHKLSGRKW 120

Query: 121 VHIIPKEGHIVHPVYATSSTSPELKST 148
           VH+IPKEGH++HPVYA  ST+ ELK+T
Sbjct: 121 VHVIPKEGHVLHPVYA--STASELKTT 145

[Close]

BLAST of Tan0000348 vs. TAIR 10
Match: AT5G15220.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 212.6 bits (540), Expect = 2.1e-55
Identity = 97/149 (65.10%), Postives = 121/149 (81.21%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--RSFNDGAVVGLSFLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y   S +DG+  GLS +F+RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYSGSSISDGSSSGLSLVFKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFAMKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA+KEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIIPKEGHIVHPVYATSSTSPELKSTT 149
           W+H+ P  GH++HP+Y  ++ +   K  T
Sbjct: 124 WIHVDPTGGHVLHPIYTKAAAAQSTKLKT 152

[Close]

BLAST of Tan0000348 vs. TAIR 10
Match: AT2G16930.2 (Ribosomal protein L27 family protein )

HSP 1 Score: 209.9 bits (533), Expect = 1.4e-54
Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--RSFNDGAVVGLSFLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y   S +DG+  GLS + +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFAMKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA+KEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIIPKEGHIVHPVYATSSTSPELKSTT 149
           W+H+ P  GH++HP+Y  ++ +   K  T
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNT 152

[Close]

BLAST of Tan0000348 vs. TAIR 10
Match: AT2G16930.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 209.9 bits (533), Expect = 1.4e-54
Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--RSFNDGAVVGLSFLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y   S +DG+  GLS + +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFAMKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA+KEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIIPKEGHIVHPVYATSSTSPELKSTT 149
           W+H+ P  GH++HP+Y  ++ +   K  T
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNT 152

[Close]

BLAST of Tan0000348 vs. TAIR 10
Match: AT2G16930.3 (Ribosomal protein L27 family protein )

HSP 1 Score: 209.9 bits (533), Expect = 1.4e-54
Identity = 96/149 (64.43%), Postives = 120/149 (80.54%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--RSFNDGAVVGLSFLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++L+T VP Y   S +DG+  GLS + +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFAMKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA+KEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIIPKEGHIVHPVYATSSTSPELKSTT 149
           W+H+ P  GH++HP+Y  ++ +   K  T
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNT 152

[Close]

BLAST of Tan0000348 vs. TAIR 10
Match: AT5G40950.1 (ribosomal protein large subunit 27 )

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-20
Identity = 50/85 (58.82%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VGIGKDHT+F+
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118

Query: 103 MKEGCVKFEKHKLSGRKWVHIIPKE 128
           + +G VKFEK     RK + + P+E
Sbjct: 119 LIDGLVKFEKFG-PDRKKISVYPRE 142

The following BLAST results are available for this feature:

BLAST of Tan0000348 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9IM57	2.2e-25	68.67	50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)...	[more]
Q6G507	2.9e-25	67.47	50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 ...	[more]
B4RZH4	1.1e-24	67.07	50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 11...	[more]
Q2GCN3	2.5e-24	67.07	50S ribosomal protein L27 OS=Neorickettsia sennetsu (strain ATCC VR-367 / Miyaya...	[more]
Q48NL3	2.5e-24	63.10	50S ribosomal protein L27 OS=Pseudomonas savastanoi pv. phaseolicola (strain 144...	[more]

BLAST of Tan0000348 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877023.1	2.8e-73	89.19	50S ribosomal protein L27-like [Benincasa hispida]	[more]
XP_022964702.1	8.1e-73	90.54	uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 unchar...	[more]
XP_022970580.1	8.1e-73	91.10	uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharac...	[more]
XP_016901663.1	1.1e-72	89.80	PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribos...	[more]
KAG6583414.1	2.3e-72	89.86	hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0000348 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I390	3.9e-73	91.10	uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515...	[more]
A0A6J1HP14	3.9e-73	90.54	uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC1114647...	[more]
A0A5A7TXR2	5.1e-73	89.80	50S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S4E0A6	5.1e-73	89.80	50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1	[more]
A0A6J1DS22	3.7e-71	89.12	uncharacterized protein LOC111023867 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Tan0000348 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15220.1	2.1e-55	65.10	Ribosomal protein L27 family protein	[more]
AT2G16930.2	1.4e-54	64.43	Ribosomal protein L27 family protein	[more]
AT2G16930.1	1.4e-54	64.43	Ribosomal protein L27 family protein	[more]
AT2G16930.3	1.4e-54	64.43	Ribosomal protein L27 family protein	[more]
AT5G40950.1	1.7e-20	58.82	ribosomal protein large subunit 27	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001684	Ribosomal protein L27	PRINTS	PR00063	RIBOSOMALL27	coord: 95..119 score: 44.31 coord: 45..69 score: 63.85 coord: 70..94 score: 57.38
IPR001684	Ribosomal protein L27	TIGRFAM	TIGR00062	TIGR00062	coord: 43..123 e-value: 7.5E-35 score: 116.8
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 43..122 e-value: 5.8E-37 score: 125.6
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 3..145
IPR001684	Ribosomal protein L27	HAMAP	MF_00539	Ribosomal_L27	coord: 42..126 score: 25.739183
None	No IPR available	GENE3D	2.40.50.100		coord: 47..138 e-value: 1.7E-32 score: 113.7
None	No IPR available	PANTHER	PTHR15893:SF10	50S RIBOSOMAL PROTEIN L27	coord: 3..145
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 43..123
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 75..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000348.1	Tan0000348.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome