Tan0000334 (gene) Snake gourd v1

Overview


Name	Tan0000334
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	40S ribosomal protein S21
Location	LG06: 79175421 .. 79178951 (-)
RNA-Seq Expression	Tan0000334
Synteny	Tan0000334

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTAATTCTCGTCCATCGTACTTCCCCTCTCTCAGCAGTTGGCCGACTGGTATTTTCTCTCATCTTTCCGTTCATCTCTCTTCAATCTATTTTTCTCAGTTCCTGTTCGTTGTTTTATCATGCTTCTAGTTTCTGAAACTCAGTAAGTAGTAGTTTCTCTACTATCTACTGGTCGAGAAATCGATCTATTCTGTTCATATACAATTGAAACGACGACTTGTAAATCCTATGCTGAATGTGCTTCGATTCATATAAGCGTTTGTTCATTCATATAATGGATTAGAAATCGTTTTTTTATGTCTTGATCCAATGTTTCTTAACTGAAGCAGGTTTATCTATAGATCGAAGTAAGTCGCCGAAGCTAAAATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGGTAATTACTTAATCTGAATTCTTACGTTATAAATTATATTTTACTGTTTGCATTTTGGTTTCTAACATTTTCAGAAATTCGTTGTTGTATCTAATTTCAGCTCTGCCACAAATAGACTGATTACGTCCAAGGACCATGCCTCGGTTCAGATTAACATCGGTCATTTGGATGAGAATGGCATCTACACTGGCCAATTCTCCACTTTCGCTCTCTGCGGTTTCATCCGTGCTCAGGTTCGATTTCATAATTAATTTCTGTTCATGTTTTATCGTTTGTCTATTATATTAAAATTCGCTGCGGTTTTCTGTTTACTATTTTTTTAATTGCGAGTTATCGCCCTTTAGTATGATAATTTTGGTTATTTAGTTGCTGCTTCACTGACACGAGAGCTATTTCTTATTTGAACTGTTTTCTGTATGGTCATAATCATCATTTATCTACCGTCTGAAATGCTGTTAATCGGTGTTGGTTAGATTGAATCTTCTCCATTTTCATGGATTAATTGAGAACCTTTAGACAACACATCTTGTTTCTGGTTATCTTTTATAGTTTTTTTTTTTTGAATTTGGCCCTACGATTCCTTTATATTATGCTAACTATTCATTTACATTGTTTTTGAATAATTTGTGGCTGCTTCATTGACATAAGAGCTTTTTCTTGTTTGAATTGAATTTCTGTCTGTATTTGTTTATTTTGATGCATGTACCTTCGTGAAATGTTGTGAATGATTTCATGGAGTCTTCTTCCCTCATTGGATTTTAAGAATTTTTCAGACGTTAACATCTTTTACTTCTTTCATTTTTTTTATCATATTTACATTATTGGGAAGTTTTTGCGATTATCTTAGATATCTAGGTAGCTGTATTTATCTATGTTCTCTAGCGGACACAAATTGGCACCACATTTTTTGAGTCTTACCAAAATACGTTTATAGAAAACTGATTTGATTTTTTGGAAATATCTTTAACACTATTTTTTTGCGCCAAGGTTTAGGCTAAAATATTTTTTGAGTTTCTAATTATTGGATATTTTTGTTGATCACATCATAATGTATACTAGTAGGTGTATTATTAGTTTTCTATTTTTGAAAGTTAAACTTTTTTGCTACTTTTTCATTGTGTTTTTGAAATCATAGTTTAGGGCATTTTGGACGTGCTTTGAACATCTGATAAGCACATTAAACACCTGTTGGAAATTTGCGAACATGTTTTGAACAATTGTTAGAAACCTTAACTAAGATGTTTACTCTGAATTGTTATTTTATTCTTCGAGTGTAAGCATATTATGGGCATAAAAAGAAATGGAATAAGATGTTTTAAAAAAATAAATCAAAATGGAATACGAATGTTAAACATTATTTATTACCAGTACCATTGACTCAAATTTTTAATACGATATGAAATCATTTAAAAGAAAACGTTAGGTTGGATTTTGAAAACATTACAAGCATTTCTATATTTAGAAGTAGGCAAACTAGTTTCTTCAATATTCTGAAGTTCTCTGTTTCCCCACAAAAAAAAGCTAGTTTCTAGAATTTTTCGTAGTGTTGTATATTTTTTTTACTTTTATGTTGTCTTTCATATAAAAATGCATAAAAATATTTTTGTTTAAATAGTGATTAACAATCAGAATAAAGATGTGTAAAAGATAGTGTTTTGCTATGAAGTGGTATATATTATACTGCCCTCTTCTAAAGCATGACGCCCATGTATTCATCCATGCTTATTTGTCTCTAATGGTTCTGCCCTTTGTATTTGAATGTCTATGTTGGATTTCACTTTTGGATGCTCGTTGGCTCTTGGATGGGTGTTTTTTTTATAAATATTTCTCAGGTTCCCTGTGATAACCTTTTGGTTTTTGGAAATTAGGTTTGATAAATATTTGAGGTTCCCTGTGATACTTTTTATATGTGTTTTCGATAACAAAGTCAAGTTTTGAAAACTAAAAAAAAAGTAGTTTCCAAAAACTTGTTTTTGTTTTTTGAATTTAGCTAAGAATACTAGTCTTTTCTCAAGAAAGATGGGAACCATTACATGTGAGATGAAAACCATGGTAGATAAATAGTGAGAAAACATGTACCATTTTCAAAAACCAAAAATAAAAAACGTAGTGTTATCAAACGGAGCCTAGTACTCAAAACTGCGCTTGGTTTTTGAAAACATACTTCAAAAGTAGATAAGAAAACATAGAGATTCATAGGAGGAGTAGAATTTATAGGCCTAATTTTCAAAAATCAAATGTGTATCAAATTGCAAATATTTACAGTTTTGCTTTATTTGATTTCGATATTTAGAACCGGTAATCAAGTTTTTTAAGTGACATAGCCTTGTTGTTTCTTTCACTTGAGTTCTATTGAGTTAGTGGGGAAAGTACTCTATATTTTATTCCCGCACGAAAATTTTTAAAAACATTAAAATAAAAAAAATCCAATTCAAAACTTGACCAACGACCTCTTATCTCCTTCTCCAATTAACACGTGTTTAATTATGTAGATATTTTTTCATTAAATAAATCAACATAAGATTTATCTATTTTAAGCATTTTCTTAATAATTTTTTAAAGAACTAATTTCAAGTCTTTCATGCAAATTTAATAGATTCAAAGTCTGTTATTGAAATCTAGTATTTCTTTTTGTGAAGAAGCAACAAACTACTCTTTGATAAACGAAATGGAAATTAAATTTAAATTGAAATACATTTGTTTGTTTCATGTTAAGATTATTTATGGGTATAGATTTTACGATTTATTAAGATAATTAAAGTCTTTGTCGGTTATAATTGACAGGGAGATGCGGACAGTGCTTTGGACAGGTTGTGGCAGAAGAAGAAAGTAGAAGTTCGTCAACAGTAGAAAATGCAACATTTTCTTCTACTTGCAGATTTATTTCTATTTAAGATGTTAGTTATATTGCAAATTATGAATGTTTAGAGCCTGCCTTTGTTAACCTTTTGATGAACGCTTCTAAAAAATTGTAGTGTTTGTTCGAATCTTCCTTCAGTGAAGTTGGGTTTTGATAATTTATTAGTGTATTAACGTTTGACCTTTTCGTCAAATCATTTTAGCTTATCTATTTTAAATGAATGTTTTACCTTTGAATGAGTGGTTAGTTTAGGGA

mRNA sequence

CCTAATTCTCGTCCATCGTACTTCCCCTCTCTCAGCAGTTGGCCGACTGGTTTATCTATAGATCGAAGTAAGTCGCCGAAGCTAAAATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGCTCTGCCACAAATAGACTGATTACGTCCAAGGACCATGCCTCGGTTCAGATTAACATCGGTCATTTGGATGAGAATGGCATCTACACTGGCCAATTCTCCACTTTCGCTCTCTGCGGTTTCATCCGTGCTCAGGGAGATGCGGACAGTGCTTTGGACAGGTTGTGGCAGAAGAAGAAAGTAGAAGTTCGTCAACAGTAGAAAATGCAACATTTTCTTCTACTTGCAGATTTATTTCTATTTAAGATGTTAGTTATATTGCAAATTATGAATGTTTAGAGCCTGCCTTTGTTAACCTTTTGATGAACGCTTCTAAAAAATTGTAGTGTTTGTTCGAATCTTCCTTCAGTGAAGTTGGGTTTTGATAATTTATTAGTGTATTAACGTTTGACCTTTTCGTCAAATCATTTTAGCTTATCTATTTTAAATGAATGTTTTACCTTTGAATGAGTGGTTAGTTTAGGGA

Coding sequence (CDS)

ATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAGTGCTCTGCCACAAATAGACTGATTACGTCCAAGGACCATGCCTCGGTTCAGATTAACATCGGTCATTTGGATGAGAATGGCATCTACACTGGCCAATTCTCCACTTTCGCTCTCTGCGGTTTCATCCGTGCTCAGGGAGATGCGGACAGTGCTTTGGACAGGTTGTGGCAGAAGAAGAAAGTAGAAGTTCGTCAACAGTAG

Protein sequence

MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQGDADSALDRLWQKKKVEVRQQ

Homology

[Close]

BLAST of Tan0000334 vs. ExPASy Swiss-Prot
Match: Q3E902 (40S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 2.4e-37
Identity = 70/81 (86.42%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQ 82
          QGDADS +DRLWQKKKVE +Q
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQ 81

[Close]

BLAST of Tan0000334 vs. ExPASy Swiss-Prot
Match: Q9M337 (40S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.7e-36
Identity = 67/82 (81.71%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADS +DRLWQKKKVE +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

[Close]

BLAST of Tan0000334 vs. ExPASy Swiss-Prot
Match: P35687 (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.5e-35
Identity = 66/82 (80.49%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRA
Sbjct: 1  MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQK+K EV+QQ
Sbjct: 61 QGDADSALDRLWQKRKAEVKQQ 82

[Close]

BLAST of Tan0000334 vs. ExPASy Swiss-Prot
Match: Q41852 (40S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.2e-34
Identity = 64/81 (79.01%), Postives = 74/81 (91.36%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RA
Sbjct: 1  MQNEEGKTVDLYVPRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQ 82
          QGDADS+LDRLWQKKK E++Q
Sbjct: 61 QGDADSSLDRLWQKKKAEIKQ 81

[Close]

BLAST of Tan0000334 vs. ExPASy Swiss-Prot
Match: Q9SMI2 (40S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.8e-25
Identity = 51/75 (68.00%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIR 60
          MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R
Sbjct: 1  MQNDEGKIVDLYIPRKCSATNRLISATDHAAVQINVGHVDPNSGLYTGDYTTFALCGFVR 60

Query: 61 AQGDADSALDRLWQK 75
          + G++D+AL+RL  K
Sbjct: 61 SMGESDAALNRLCVK 75

[Close]

BLAST of Tan0000334 vs. NCBI nr
Match: XP_004134210.2 (40S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_008458454.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_016898984.1 PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo] >XP_038879937.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906504.1 40S ribosomal protein S21-2 [Benincasa hispida] >XP_038906506.1 40S ribosomal protein S21-2 [Benincasa hispida] >KAA0049493.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa] >KGN57104.1 hypothetical protein Csa_010287 [Cucumis sativus] >TYK16172.1 40S ribosomal protein S21-2 [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 7.2e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of Tan0000334 vs. NCBI nr
Match: XP_022138287.1 (40S ribosomal protein S21-2 [Momordica charantia] >XP_022138288.1 40S ribosomal protein S21-2 [Momordica charantia] >XP_022138289.1 40S ribosomal protein S21-2 [Momordica charantia])

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-38
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of Tan0000334 vs. NCBI nr
Match: XP_022930553.1 (40S ribosomal protein S21-2-like [Cucurbita moschata] >XP_023000447.1 40S ribosomal protein S21-2-like [Cucurbita maxima] >XP_023513574.1 40S ribosomal protein S21-2-like [Cucurbita pepo subsp. pepo] >KAG6593967.1 40S ribosomal protein S21-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026309.1 40S ribosomal protein S21-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.7 bits (426), Expect = 2.1e-38
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of Tan0000334 vs. NCBI nr
Match: XP_004143089.1 (40S ribosomal protein S21-2 [Cucumis sativus] >XP_038875675.1 40S ribosomal protein S21-2-like [Benincasa hispida] >KGN47181.1 hypothetical protein Csa_021003 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 2.1e-38
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKK EVRQQ
Sbjct: 61 QGDADSALDRLWQKKKAEVRQQ 82

[Close]

BLAST of Tan0000334 vs. NCBI nr
Match: XP_022959410.1 (40S ribosomal protein S21-2 isoform X2 [Cucurbita moschata] >XP_023549096.1 40S ribosomal protein S21-2 [Cucurbita pepo subsp. pepo] >XP_023549097.1 40S ribosomal protein S21-2 [Cucurbita pepo subsp. pepo] >KAG7013636.1 40S ribosomal protein S21-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.9 bits (424), Expect = 3.6e-38
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSA+DRLWQKKKVEVRQQ
Sbjct: 61 QGDADSAIDRLWQKKKVEVRQQ 82

[Close]

BLAST of Tan0000334 vs. ExPASy TrEMBL
Match: A0A1S4DSM1 (40S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.5e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of Tan0000334 vs. ExPASy TrEMBL
Match: A0A5D3CXC9 (40S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001000 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.5e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of Tan0000334 vs. ExPASy TrEMBL
Match: A0A0A0L7W3 (40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.5e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of Tan0000334 vs. ExPASy TrEMBL
Match: A0A6J1CCM4 (40S ribosomal protein S21 OS=Momordica charantia OX=3673 GN=LOC111009501 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.8e-39
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQFSTFALCGFIRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHVDENGIYTGQFSTFALCGFIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of Tan0000334 vs. ExPASy TrEMBL
Match: A0A6J1KDN2 (40S ribosomal protein S21 OS=Cucurbita maxima OX=3661 GN=LOC111494713 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.0e-38
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCG+IRA
Sbjct: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADSALDRLWQKKKVEVRQQ
Sbjct: 61 QGDADSALDRLWQKKKVEVRQQ 82

[Close]

BLAST of Tan0000334 vs. TAIR 10
Match: AT5G27700.1 (Ribosomal protein S21e )

HSP 1 Score: 155.6 bits (392), Expect = 1.7e-38
Identity = 70/81 (86.42%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQ 82
          QGDADS +DRLWQKKKVE +Q
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQ 81

[Close]

BLAST of Tan0000334 vs. TAIR 10
Match: AT3G53890.1 (Ribosomal protein S21e )

HSP 1 Score: 152.1 bits (383), Expect = 1.9e-37
Identity = 67/82 (81.71%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADS +DRLWQKKKVE +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

[Close]

BLAST of Tan0000334 vs. TAIR 10
Match: AT3G53890.2 (Ribosomal protein S21e )

HSP 1 Score: 152.1 bits (383), Expect = 1.9e-37
Identity = 67/82 (81.71%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRA 60
          M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWQKKKVEVRQQ 83
          QGDADS +DRLWQKKKVE +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82

The following BLAST results are available for this feature:

BLAST of Tan0000334 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E902	2.4e-37	86.42	40S ribosomal protein S21-2 OS=Arabidopsis thaliana OX=3702 GN=RPS21C PE=1 SV=2	[more]
Q9M337	2.7e-36	81.71	40S ribosomal protein S21-1 OS=Arabidopsis thaliana OX=3702 GN=RPS21B PE=1 SV=1	[more]
P35687	6.5e-35	80.49	40S ribosomal protein S21 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS21 PE=3...	[more]
Q41852	7.2e-34	79.01	40S ribosomal protein S21 OS=Zea mays OX=4577 GN=RPS21 PE=3 SV=1	[more]
Q9SMI2	2.8e-25	68.00	40S ribosomal protein S21 OS=Cyanophora paradoxa OX=2762 GN=RPS21 PE=3 SV=1	[more]

BLAST of Tan0000334 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134210.2	7.2e-39	100.00	40S ribosomal protein S21-2 [Cucumis sativus] >XP_008438883.1 PREDICTED: 40S rib...	[more]
XP_022138287.1	1.6e-38	98.78	40S ribosomal protein S21-2 [Momordica charantia] >XP_022138288.1 40S ribosomal ...	[more]
XP_022930553.1	2.1e-38	97.56	40S ribosomal protein S21-2-like [Cucurbita moschata] >XP_023000447.1 40S riboso...	[more]
XP_004143089.1	2.1e-38	98.78	40S ribosomal protein S21-2 [Cucumis sativus] >XP_038875675.1 40S ribosomal prot...	[more]
XP_022959410.1	3.6e-38	96.34	40S ribosomal protein S21-2 isoform X2 [Cucurbita moschata] >XP_023549096.1 40S ...	[more]

BLAST of Tan0000334 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DSM1	3.5e-39	100.00	40S ribosomal protein S21 OS=Cucumis melo OX=3656 GN=LOC103483842 PE=3 SV=1	[more]
A0A5D3CXC9	3.5e-39	100.00	40S ribosomal protein S21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0L7W3	3.5e-39	100.00	40S ribosomal protein S21 OS=Cucumis sativus OX=3659 GN=Csa_3G154280 PE=3 SV=1	[more]
A0A6J1CCM4	7.8e-39	98.78	40S ribosomal protein S21 OS=Momordica charantia OX=3673 GN=LOC111009501 PE=3 SV...	[more]
A0A6J1KDN2	1.0e-38	97.56	40S ribosomal protein S21 OS=Cucurbita maxima OX=3661 GN=LOC111494713 PE=3 SV=1	[more]

BLAST of Tan0000334 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27700.1	1.7e-38	86.42	Ribosomal protein S21e	[more]
AT3G53890.1	1.9e-37	81.71	Ribosomal protein S21e	[more]
AT3G53890.2	1.9e-37	81.71	Ribosomal protein S21e	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038579	Ribosomal protein S21e superfamily	GENE3D	3.30.1230.20		coord: 1..81 e-value: 2.6E-42 score: 144.6
IPR001931	Ribosomal protein S21e	PIRSF	PIRSF002148	RPS21e	coord: 1..82 e-value: 1.3E-38 score: 128.9
IPR001931	Ribosomal protein S21e	PFAM	PF01249	Ribosomal_S21e	coord: 1..77 e-value: 6.9E-39 score: 131.8
IPR001931	Ribosomal protein S21e	PANTHER	PTHR10442	40S RIBOSOMAL PROTEIN S21	coord: 1..82
None	No IPR available	PANTHER	PTHR10442:SF13	40S RIBOSOMAL PROTEIN S21	coord: 1..82
IPR018279	Ribosomal protein S21e, conserved site	PROSITE	PS00996	RIBOSOMAL_S21E	coord: 11..19

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000334.1	Tan0000334.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome