Sequences
The following sequences are available for this feature:
Legend: exon five_prime_UTR CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTAAAGAAGACAAACGTCCTACCGTCGGCTCGGGGAATACAGAAATACAGAGGTGGAAGCCTCTTGCACACGATACCATCAAACTCAATGTGGTTGCAGCATGCCATCCAACAAATTTGACCACCGGATTTGGA ATGGTCTTTCGTGACTGGAGCGGAAACCTCATAGTTGCAGCATCAGAGCCCTTTAATTACAAGCTTGACCCCTTCTCTGCCGAGGCAACAACTCTCCTTCAGGGGTTGAAGATGGCCGAACAATTAGCGATTAATCACTTGTGGGTTGAGTCGGATTGTGAGCTGCTGGTGAAGATCATCCATGCGCATGGGTACCAACAATCTCCATAG
ATTTAAAGAAGACAAACGTCCTACCGTCGGCTCGGGGAATACAGAAATACAGAGGTGGAAGCCTCTTGCACACGATACCATCAAACTCAATGTGGTTGCAGCATGCCATCCAACAAATTTGACCACCGGATTTGGAATGGTCTTTCGTGACTGGAGCGGAAACCTCATAGTTGCAGCATCAGAGCCCTTTAATTACAAGCTTGACCCCTTCTCTGCCGAGGCAACAACTCTCCTTCAGGGGTTGAAGATGGCCGAACAATTAGCGATTAATCACTTGTGGGTTGAGTCGGATTGTGAGCTGCTGGTGAAGATCATCCATGCGCATGGGTACCAACAATCTCCATAG
ATGGTCTTTCGTGACTGGAGCGGAAACCTCATAGTTGCAGCATCAGAGCCCTTTAATTACAAGCTTGACCCCTTCTCTGCCGAGGCAACAACTCTCCTTCAGGGGTTGAAGATGGCCGAACAATTAGCGATTAATCACTTGTGGGTTGAGTCGGATTGTGAGCTGCTGGTGAAGATCATCCATGCGCATGGGTACCAACAATCTCCATAG
MVFRDWSGNLIVAASEPFNYKLDPFSAEATTLLQGLKMAEQLAINHLWVESDCELLVKIIHAHGYQQSP
Homology
BLAST of Tan0000329 vs. NCBI nr
Match:
XP_022841874.1 (uncharacterized protein LOC111365549 [Olea europaea var. sylvestris])
HSP 1 Score: 54.7 bits (130), Expect = 3.7e-04
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 0
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
XP_022841874.1 3.7e-04 42.62 uncharacterized protein LOC111365549 [Olea europaea var. sylvestris] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
A T T T A A A G A A G A C A A A C G T C C T A C C G T C G G C T C G G G G A A T A C A G A A A T A C A G A G G T G G A A G C C T C T T G C A C A C G A T A C C A T C A A A C T C A A T G T G G T T G C A G C A T G C C A T C C A A C A A A T T T G A C C A C C G G A T T T G G A A T G G T C T T T C G T G A C T G G A G C G G A A A C C T C A T A G T T G C A G C A T C A G A G C C C T T T A A T T A C A A G C T T G A C C C C T T C T C T G C C G A G G C A A C A A C T C T C C T T C A G G G G T T G A A G A T G G C C G A A C A A T T A G C G A T T A A T C A C T T G T G G G T T G A G T C G G A T T G T G A G C T G C T G G T G A A G A T C A T C C A T G C G C A T G G G T A C C A A C A A T C T C C A T A G 50 100 150 200 250 300 Expect = 2.3E-14 / Score = 53.3 Expect = 1.0E-5 / Score = 27.6 Expect = 4.4603E-13 / Score = 56.9388 Sequence PF13456 G3DSA:3.30.420.10 cd06222
IPR Term IPR Description Source Source Term Source Description Alignment
IPR002156 Ribonuclease H domain PFAM PF13456 RVT_3 coord: 1..63 IPR036397 Ribonuclease H superfamily GENE3D 3.30.420.10 coord: 1..68 IPR044730 Ribonuclease H-like domain, plant type CDD cd06222 RNase_H_like coord: 2..69
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676 nucleic acid binding
molecular_function
GO:0004523 RNA-DNA hybrid ribonuclease activity
