Tan0000282 (gene) Snake gourd v1

Overview


Name	Tan0000282
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG09: 67699335 .. 67700236 (+)
RNA-Seq Expression	Tan0000282
Synteny	Tan0000282

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATGGTAGAGGCATCTCCATACTCCCACCATTTATTATTTACAATAAGAAAGAGAACAAAAAATAATATTTTTCTACCTTCCTTTGGAACAAGAAGAAATATTCTTAAAAAATTAACGGTGCAATTCCGGCTACCGAGAGTCTATGATTCGTGAAAAAAGGATGTGGATGTAATTAATTGCAGCGAGCATTTATTTCGGATTTTCCATAATCGTCCCATGTGACAGGCAATGGCGATCGCAGATTCAAGTTTTATCTTCACGGGTCTCTCTGCCGTACCTCATCCCCCAATTTTCAACATCAACAATGGCAGAAAATCCAGGACCACGTCGGCGAAACGAACAGACGATTCCGATTCCGATTCCACTTCATCGACGCAAGCAAATCAACTCAAATTTCCATCGCTGAGAGTTTCAAATCCATTTCTCGCCCGATCTGTCGTTTCGGTACTCGGATTAGGGTTCGTCGATGCAGGGTACGAAAATTTAATTTAGTCTTCTTCGTCCTGTAATTTCGTTCTTGTTGTTTCTTGAGAGTTGATTTAGTTCTGTTTCCACTGAAATTGAAGTCGAATTAGGGGTTGAAATGATTAGGTACAGTGGAGATTGGTCTAGAATTGGAGCGATCACGAAGGAGAGTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGATTCCGTTTTGTGTATTTCTGATTTTTACTCTCTCCAAAGAGACGGATTCTTCGTAGTAGTGTACGGATGATGCCCAAAACTGCCTAGAAGTCCAAATACCCTAAACTTTTTATACATATTCTTTCCAAAGCTGTGATATTGTCATTAACCTTTTGTTCAGGTTTCAAAAATATTCTTAAAGAGTAAAAAAATAATTATAATATTGGACTAAAAGAAAAAAATAATTTAA

mRNA sequence

CTATGGTAGAGGCATCTCCATACTCCCACCATTTATTATTTACAATAAGAAAGAGAACAAAAAATAATATTTTTCTACCTTCCTTTGGAACAAGAAGAAATATTCTTAAAAAATTAACGGTGCAATTCCGGCTACCGAGAGTCTATGATTCGTGAAAAAAGGATGTGGATGTAATTAATTGCAGCGAGCATTTATTTCGGATTTTCCATAATCGTCCCATGTGACAGGCAATGGCGATCGCAGATTCAAGTTTTATCTTCACGGGTCTCTCTGCCGTACCTCATCCCCCAATTTTCAACATCAACAATGGCAGAAAATCCAGGACCACGTCGGCGAAACGAACAGACGATTCCGATTCCGATTCCACTTCATCGACGCAAGCAAATCAACTCAAATTTCCATCGCTGAGAGTTTCAAATCCATTTCTCGCCCGATCTGTCGTTTCGGTACTCGGATTAGGGTTCGTCGATGCAGGGTACAGTGGAGATTGGTCTAGAATTGGAGCGATCACGAAGGAGAGTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGATTCCGTTTTGTGTATTTCTGATTTTTACTCTCTCCAAAGAGACGGATTCTTCGTAGTAGTGTACGGATGATGCCCAAAACTGCCTAGAAGTCCAAATACCCTAAACTTTTTATACATATTCTTTCCAAAGCTGTGATATTGTCATTAACCTTTTGTTCAGGTTTCAAAAATATTCTTAAAGAGTAAAAAAATAATTATAATATTGGACTAAAAGAAAAAAATAATTTAA

Coding sequence (CDS)

ATGGCGATCGCAGATTCAAGTTTTATCTTCACGGGTCTCTCTGCCGTACCTCATCCCCCAATTTTCAACATCAACAATGGCAGAAAATCCAGGACCACGTCGGCGAAACGAACAGACGATTCCGATTCCGATTCCACTTCATCGACGCAAGCAAATCAACTCAAATTTCCATCGCTGAGAGTTTCAAATCCATTTCTCGCCCGATCTGTCGTTTCGGTACTCGGATTAGGGTTCGTCGATGCAGGGTACAGTGGAGATTGGTCTAGAATTGGAGCGATCACGAAGGAGAGTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGATTCCGTTTTGTGTATTTCTGATTTTTACTCTCTCCAAAGAGACGGATTCTTCGTAG

Protein sequence

MAIADSSFIFTGLSAVPHPPIFNINNGRKSRTTSAKRTDDSDSDSTSSTQANQLKFPSLRVSNPFLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVIPFCVFLIFTLSKETDSS

Homology

[Close]

BLAST of Tan0000282 vs. NCBI nr
Match: XP_023531156.1 (uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 101/126 (80.16%), Postives = 112/126 (88.89%), Query Frame = 0


Query: 1   MAIADSSFIFTGLSAVPHPPIFNINNGRKSRTTSAKRTDDSDSDSTSSTQANQLKFPSLR 60
           M IADS+FIFTGLSA+PHP + + NN RK  TTSAKRT DSDSDS SST   QLKFPSLR
Sbjct: 1   MPIADSTFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSDSISST---QLKFPSLR 60

Query: 61  VSNPFLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVIPFCVFLIFTLS 120
           V+NP LARSVV+VLGLGFVDAGYSGDWSRIGAITKE+EDLLKIGAFLV+PFCVFLIF+ S
Sbjct: 61  VANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KETDSS 127
           ++TDSS
Sbjct: 121 EQTDSS 123

[Close]

BLAST of Tan0000282 vs. NCBI nr
Match: XP_004146667.1 (uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hypothetical protein Csa_020133 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 7.9e-45
Identity = 101/127 (79.53%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 1   MAIADSSFIFTGLSAVPHPPIFNINNGRKSRTTSAKRTDDSDSDSTSSTQANQLKFPSLR 60
           MA+ DSSFIF G S VPH P+ N NNGRK   TSAKRT DSDSDS SSTQ NQ KFPSLR
Sbjct: 1   MAMVDSSFIFIGFSPVPH-PLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLR 60

Query: 61  VSNPFLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVIPFCVFLIFTLS 120
           VSNP LARSVVSVLGLGFVDAGYSGDWSRIGAITKE+EDLLKIGA LV+PFCVFL+F+ S
Sbjct: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFS 120

Query: 121 K-ETDSS 127
           K ++DSS
Sbjct: 121 KYDSDSS 126

[Close]

BLAST of Tan0000282 vs. NCBI nr
Match: XP_023004836.1 (uncharacterized protein LOC111498016 [Cucurbita maxima])

HSP 1 Score: 187.2 bits (474), Expect = 8.7e-44
Identity = 99/126 (78.57%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MAIADSSFIFTGLSAVPHPPIFNINNGRKSRTTSAKRTDDSDSDSTSSTQANQLKFPSLR 60
           M IADSSFIFTGLSA+PHP I + NN RK  TTSAKRT DSDS S++     QLKFPSLR
Sbjct: 1   MPIADSSFIFTGLSALPHPLILSNNNARKFGTTSAKRTGDSDSISST-----QLKFPSLR 60

Query: 61  VSNPFLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVIPFCVFLIFTLS 120
           VSNP LARSVV+VLGLGFVDAGYSGDWSRIGAITKE+ED LKIGAFLV+PFCVFLIF+ S
Sbjct: 61  VSNPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDFLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KETDSS 127
           ++TDSS
Sbjct: 121 EQTDSS 121

[Close]

BLAST of Tan0000282 vs. NCBI nr
Match: XP_022933449.1 (uncharacterized protein LOC111440861 [Cucurbita moschata] >KAG6587801.1 hypothetical protein SDJN03_16366, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035696.1 hypothetical protein SDJN02_02494, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-43
Identity = 98/126 (77.78%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 1   MAIADSSFIFTGLSAVPHPPIFNINNGRKSRTTSAKRTDDSDSDSTSSTQANQLKFPSLR 60
           M IADSSFIFTGLSA+PHP + + NN RK  TTSAKRT DSDS S++     QLKFPSLR
Sbjct: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISST-----QLKFPSLR 60

Query: 61  VSNPFLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVIPFCVFLIFTLS 120
           V+NP LARSVV+VLGLGFVDAGYSGDWSRIGAITKE+EDLLKIGAFLV+PFCVFLIF+ S
Sbjct: 61  VANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KETDSS 127
           ++TDSS
Sbjct: 121 EQTDSS 121

[Close]

BLAST of Tan0000282 vs. NCBI nr
Match: XP_008443827.1 (PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 4.3e-43
Identity = 101/129 (78.29%), Postives = 111/129 (86.05%), Query Frame = 0


Query: 1   MAIADSSFIFTGLSAVPHPPIFN--INNGRKSRTTSAKRTDDSDSDSTSSTQANQLKFPS 60
           MA+ DSSFIF G+SAVPHP + N   NNGRK   TSAKRT   DSDSTSSTQ NQ KFPS
Sbjct: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRT--QDSDSTSSTQPNQFKFPS 60

Query: 61  LRVSNPFLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVIPFCVFLIFT 120
           LRVSNP LARSVVSVLGLGFVDAGYSGDWSRIGAITKE+E+LLKIGAFLV+PFCVFL+F+
Sbjct: 61  LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFS 120

Query: 121 LSK-ETDSS 127
            SK ++DSS
Sbjct: 121 FSKFDSDSS 127

[Close]

BLAST of Tan0000282 vs. ExPASy TrEMBL
Match: A0A0A0LWH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.8e-45
Identity = 101/127 (79.53%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 1   MAIADSSFIFTGLSAVPHPPIFNINNGRKSRTTSAKRTDDSDSDSTSSTQANQLKFPSLR 60
           MA+ DSSFIF G S VPH P+ N NNGRK   TSAKRT DSDSDS SSTQ NQ KFPSLR
Sbjct: 1   MAMVDSSFIFIGFSPVPH-PLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLR 60

Query: 61  VSNPFLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVIPFCVFLIFTLS 120
           VSNP LARSVVSVLGLGFVDAGYSGDWSRIGAITKE+EDLLKIGA LV+PFCVFL+F+ S
Sbjct: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSFS 120

Query: 121 K-ETDSS 127
           K ++DSS
Sbjct: 121 KYDSDSS 126

[Close]

BLAST of Tan0000282 vs. ExPASy TrEMBL
Match: A0A6J1KT82 (uncharacterized protein LOC111498016 OS=Cucurbita maxima OX=3661 GN=LOC111498016 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.2e-44
Identity = 99/126 (78.57%), Postives = 109/126 (86.51%), Query Frame = 0


Query: 1   MAIADSSFIFTGLSAVPHPPIFNINNGRKSRTTSAKRTDDSDSDSTSSTQANQLKFPSLR 60
           M IADSSFIFTGLSA+PHP I + NN RK  TTSAKRT DSDS S++     QLKFPSLR
Sbjct: 1   MPIADSSFIFTGLSALPHPLILSNNNARKFGTTSAKRTGDSDSISST-----QLKFPSLR 60

Query: 61  VSNPFLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVIPFCVFLIFTLS 120
           VSNP LARSVV+VLGLGFVDAGYSGDWSRIGAITKE+ED LKIGAFLV+PFCVFLIF+ S
Sbjct: 61  VSNPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDFLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KETDSS 127
           ++TDSS
Sbjct: 121 EQTDSS 121

[Close]

BLAST of Tan0000282 vs. ExPASy TrEMBL
Match: A0A6J1EZT4 (uncharacterized protein LOC111440861 OS=Cucurbita moschata OX=3662 GN=LOC111440861 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.5e-44
Identity = 98/126 (77.78%), Postives = 110/126 (87.30%), Query Frame = 0


Query: 1   MAIADSSFIFTGLSAVPHPPIFNINNGRKSRTTSAKRTDDSDSDSTSSTQANQLKFPSLR 60
           M IADSSFIFTGLSA+PHP + + NN RK  TTSAKRT DSDS S++     QLKFPSLR
Sbjct: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISST-----QLKFPSLR 60

Query: 61  VSNPFLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVIPFCVFLIFTLS 120
           V+NP LARSVV+VLGLGFVDAGYSGDWSRIGAITKE+EDLLKIGAFLV+PFCVFLIF+ S
Sbjct: 61  VANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KETDSS 127
           ++TDSS
Sbjct: 121 EQTDSS 121

[Close]

BLAST of Tan0000282 vs. ExPASy TrEMBL
Match: A0A1S3B903 (uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.1e-43
Identity = 101/129 (78.29%), Postives = 111/129 (86.05%), Query Frame = 0


Query: 1   MAIADSSFIFTGLSAVPHPPIFN--INNGRKSRTTSAKRTDDSDSDSTSSTQANQLKFPS 60
           MA+ DSSFIF G+SAVPHP + N   NNGRK   TSAKRT   DSDSTSSTQ NQ KFPS
Sbjct: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRT--QDSDSTSSTQPNQFKFPS 60

Query: 61  LRVSNPFLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVIPFCVFLIFT 120
           LRVSNP LARSVVSVLGLGFVDAGYSGDWSRIGAITKE+E+LLKIGAFLV+PFCVFL+F+
Sbjct: 61  LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFS 120

Query: 121 LSK-ETDSS 127
            SK ++DSS
Sbjct: 121 FSKFDSDSS 127

[Close]

BLAST of Tan0000282 vs. ExPASy TrEMBL
Match: A0A6J1C0R6 (uncharacterized protein LOC111007301 OS=Momordica charantia OX=3673 GN=LOC111007301 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.5e-38
Identity = 90/124 (72.58%), Postives = 102/124 (82.26%), Query Frame = 0


Query: 3   IADSSFIFTGLSAVPHPPIFNINNGRKSRTTSAKRTDDSDSDSTSSTQANQLKFPSLRVS 62
           +ADS+FIF+G SAV    +FN+NN R  RT  AKRTD  DS +T S Q NQ +FPSLRV 
Sbjct: 1   MADSTFIFSGPSAVSR-SLFNVNNRRNFRTALAKRTD--DSTATKSNQENQFEFPSLRVP 60

Query: 63  NPFLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVIPFCVFLIFTLSKE 122
           NP +AR VVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLV+PFCVFLI + +K+
Sbjct: 61  NPLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCVFLISSFAKQ 120

Query: 123 TDSS 127
           TDSS
Sbjct: 121 TDSS 121

[Close]

BLAST of Tan0000282 vs. TAIR 10
Match: AT4G30845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.2 bits (217), Expect = 5.1e-18
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 32  TTSAKRTDDSDSDSTSSTQANQLKFPSLRVSNPFLARSVVSVLGLGFVDAGYSGDWSRIG 91
           T  +KR D S+  +       +     ++V N  +ARS ++VL LGF+DAGYSGDWSRIG
Sbjct: 27  TIMSKRRDFSEKSN------EERPILRIKVPNTIVARSAIAVLSLGFIDAGYSGDWSRIG 86

Query: 92  AITKESEDLLKIGAFLVIPFCVFLIFTLSKET 124
            I+KE+E+LLKI AFLV+P C+FL  + S ++
Sbjct: 87  VISKETEELLKIAAFLVVPLCIFLALSFSNDS 112

The following BLAST results are available for this feature:

BLAST of Tan0000282 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0000282 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531156.1	1.2e-45	80.16	uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]	[more]
XP_004146667.1	7.9e-45	79.53	uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hypothetical ...	[more]
XP_023004836.1	8.7e-44	78.57	uncharacterized protein LOC111498016 [Cucurbita maxima]	[more]
XP_022933449.1	1.1e-43	77.78	uncharacterized protein LOC111440861 [Cucurbita moschata] >KAG6587801.1 hypothet...	[more]
XP_008443827.1	4.3e-43	78.29	PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]	[more]

BLAST of Tan0000282 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWH4	3.8e-45	79.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1	[more]
A0A6J1KT82	4.2e-44	78.57	uncharacterized protein LOC111498016 OS=Cucurbita maxima OX=3661 GN=LOC111498016...	[more]
A0A6J1EZT4	5.5e-44	77.78	uncharacterized protein LOC111440861 OS=Cucurbita moschata OX=3662 GN=LOC1114408...	[more]
A0A1S3B903	2.1e-43	78.29	uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=...	[more]
A0A6J1C0R6	3.5e-38	72.58	uncharacterized protein LOC111007301 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of Tan0000282 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30845.1	5.1e-18	47.83	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..52
None	No IPR available	PANTHER	PTHR38389	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 1..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000282.1	Tan0000282.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane