Tan0000182 (gene) Snake gourd v1

Overview
NameTan0000182
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransmembrane protein
LocationLG01: 113148101 .. 113148376 (-)
RNA-Seq ExpressionTan0000182
SyntenyTan0000182
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGGAATTGAGCGCCACAGCATCAGCAAAACGTCTCTGTTTTTTTGTGGGTGTTCTGTTAATGGTGGCTTCGACGCATTTTCTAACTGTTGAGGGCAGAGTTATGAAATCAGTGGCAGATGGGAAGGAGAAAATTGAAGCTGTGGAGCCAATTGGAGTGGCAGCTTATATGGCCAAAGTTGATTCATTAAGTAGCAGTAGTCGCAATGCATTTAGAAGCTTGAGTTTTGTGTTGGCGTCTGGGCCTAGTAAAAAAGGTCCCGGGCATTGA

mRNA sequence

ATGGCAATGGAATTGAGCGCCACAGCATCAGCAAAACGTCTCTGTTTTTTTGTGGGTGTTCTGTTAATGGTGGCTTCGACGCATTTTCTAACTGTTGAGGGCAGAGTTATGAAATCAGTGGCAGATGGGAAGGAGAAAATTGAAGCTGTGGAGCCAATTGGAGTGGCAGCTTATATGGCCAAAGTTGATTCATTAAGTAGCAGTAGTCGCAATGCATTTAGAAGCTTGAGTTTTGTGTTGGCGTCTGGGCCTAGTAAAAAAGGTCCCGGGCATTGA

Coding sequence (CDS)

ATGGCAATGGAATTGAGCGCCACAGCATCAGCAAAACGTCTCTGTTTTTTTGTGGGTGTTCTGTTAATGGTGGCTTCGACGCATTTTCTAACTGTTGAGGGCAGAGTTATGAAATCAGTGGCAGATGGGAAGGAGAAAATTGAAGCTGTGGAGCCAATTGGAGTGGCAGCTTATATGGCCAAAGTTGATTCATTAAGTAGCAGTAGTCGCAATGCATTTAGAAGCTTGAGTTTTGTGTTGGCGTCTGGGCCTAGTAAAAAAGGTCCCGGGCATTGA

Protein sequence

MAMELSATASAKRLCFFVGVLLMVASTHFLTVEGRVMKSVADGKEKIEAVEPIGVAAYMAKVDSLSSSSRNAFRSLSFVLASGPSKKGPGH
Homology
BLAST of Tan0000182 vs. NCBI nr
Match: KAG6591405.1 (hypothetical protein SDJN03_13751, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-26
Identity = 72/95 (75.79%), Postives = 80/95 (84.21%), Query Frame = 0

Query: 1  MAMELSATASAKRLCFFVGVLLMVASTHFLTVEGRVMKSV----ADGKEKIEAVEPIGVA 60
          MAME+SATAS KRLCF VGVLLMVAS HFLTVEGR ++SV    ADGKEK+  VE IGVA
Sbjct: 1  MAMEMSATASGKRLCFVVGVLLMVASAHFLTVEGRTLRSVSEKLADGKEKMGGVEAIGVA 60

Query: 61 AYMAKVDSLSSSSRNAFRSLSFVLASGPSKKGPGH 92
          A+  +V+SLSSSS + FRSLSFVLASGPSKKGPGH
Sbjct: 61 AFRDQVNSLSSSSHSEFRSLSFVLASGPSKKGPGH 95

BLAST of Tan0000182 vs. NCBI nr
Match: KAG6608443.1 (hypothetical protein SDJN03_01785, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.8 bits (286), Expect = 4.0e-22
Identity = 64/91 (70.33%), Postives = 72/91 (79.12%), Query Frame = 0

Query: 1  MAMELSATASAKRLCFFVGVLLMVASTHFLTVEGRVMKSVADGKEKIEAVEPIGVAAYMA 60
          MAMEL  TAS +RLCF VGVLLMV  T F++VEGRV+K VAD       VEPIG+ AYMA
Sbjct: 1  MAMELRGTASGRRLCFVVGVLLMVVWTQFVSVEGRVLKGVADE----AVVEPIGMVAYMA 60

Query: 61 KVDSLSSSSRNAFRSLSFVLASGPSKKGPGH 92
           +DSLS SSR+AF SLSFVL+SGPSKKGPGH
Sbjct: 61 TLDSLSGSSRSAFSSLSFVLSSGPSKKGPGH 87

BLAST of Tan0000182 vs. NCBI nr
Match: KGN55240.1 (hypothetical protein Csa_012906 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 0

Query: 1  MAMELSATASAKRLCFFVGVLLMVASTHFLTVEGRVMKS----VADGKEKIEAVEPIGVA 60
          MAM+L    S K +CF VGVLLM+ASTHFL VEGRV++S    +AD KE++E V+PI   
Sbjct: 1  MAMKL----STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPI--- 60

Query: 61 AYMAKVDSLSSSSRNAFRSLSFVLASGPSKKGPGH 92
            + + +SLSSSSR++FRSLSFVLASGPSKKGPGH
Sbjct: 61 VLVDEANSLSSSSRSSFRSLSFVLASGPSKKGPGH 88

BLAST of Tan0000182 vs. NCBI nr
Match: KAA0064422.1 (hypothetical protein E6C27_scaffold255G001300 [Cucumis melo var. makuwa] >TYK20165.1 hypothetical protein E5676_scaffold134G002970 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 3.7e-12
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 0

Query: 23 MVASTHFLTVEGRVMKS----VADGKEKIEAVEPIGVAAYMAKVDSLSSSSRNAFRSLSF 82
          M+ASTHFL VEGRV++S    +A  KEK+E V+P+     M + +SLSSSSR++FRSLSF
Sbjct: 1  MMASTHFLIVEGRVLRSEEEKLAAMKEKMEGVKPV----VMDEANSLSSSSRSSFRSLSF 60

Query: 83 VLASGPSKKGPGH 92
          VLASGPSKKGPGH
Sbjct: 61 VLASGPSKKGPGH 69

BLAST of Tan0000182 vs. NCBI nr
Match: XP_019071956.1 (PREDICTED: uncharacterized protein LOC109121646 [Vitis vinifera] >RVW40478.1 hypothetical protein CK203_092371 [Vitis vinifera] >RVX00070.1 hypothetical protein CK203_024839 [Vitis vinifera])

HSP 1 Score: 61.2 bits (147), Expect = 5.2e-06
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 6  SATASAKRLCFFVGVLLMVASTHFLTVEGRVMKSVAD--GKEKIEAVEPIGVAAYMAKVD 65
          SAT S K L F + VL++V ST    V  R ++S  D      I+  E +GVA   A V 
Sbjct: 7  SATRSVKSLWFVLAVLVLVVSTQSSFVHCRALRSTVDVAAAAAIQGDESVGVANSFA-VS 66

Query: 66 SLSSSSRNAFRSLSFVLASGPSKKGPGH 92
          S +SS R++ RSL++ LASGPSK+GPGH
Sbjct: 67 SNNSSKRSSVRSLTYKLASGPSKRGPGH 93

BLAST of Tan0000182 vs. ExPASy TrEMBL
Match: A0A0A0KZV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641720 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.9e-18
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 0

Query: 1  MAMELSATASAKRLCFFVGVLLMVASTHFLTVEGRVMKS----VADGKEKIEAVEPIGVA 60
          MAM+L    S K +CF VGVLLM+ASTHFL VEGRV++S    +AD KE++E V+PI   
Sbjct: 1  MAMKL----STKSICFVVGVLLMMASTHFLIVEGRVLRSEEEKLADMKERMEGVKPI--- 60

Query: 61 AYMAKVDSLSSSSRNAFRSLSFVLASGPSKKGPGH 92
            + + +SLSSSSR++FRSLSFVLASGPSKKGPGH
Sbjct: 61 VLVDEANSLSSSSRSSFRSLSFVLASGPSKKGPGH 88

BLAST of Tan0000182 vs. ExPASy TrEMBL
Match: A0A5D3D9C4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002970 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-12
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 0

Query: 23 MVASTHFLTVEGRVMKS----VADGKEKIEAVEPIGVAAYMAKVDSLSSSSRNAFRSLSF 82
          M+ASTHFL VEGRV++S    +A  KEK+E V+P+     M + +SLSSSSR++FRSLSF
Sbjct: 1  MMASTHFLIVEGRVLRSEEEKLAAMKEKMEGVKPV----VMDEANSLSSSSRSSFRSLSF 60

Query: 83 VLASGPSKKGPGH 92
          VLASGPSKKGPGH
Sbjct: 61 VLASGPSKKGPGH 69

BLAST of Tan0000182 vs. ExPASy TrEMBL
Match: A0A438DYT8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_024839 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 6  SATASAKRLCFFVGVLLMVASTHFLTVEGRVMKSVAD--GKEKIEAVEPIGVAAYMAKVD 65
          SAT S K L F + VL++V ST    V  R ++S  D      I+  E +GVA   A V 
Sbjct: 7  SATRSVKSLWFVLAVLVLVVSTQSSFVHCRALRSTVDVAAAAAIQGDESVGVANSFA-VS 66

Query: 66 SLSSSSRNAFRSLSFVLASGPSKKGPGH 92
          S +SS R++ RSL++ LASGPSK+GPGH
Sbjct: 67 SNNSSKRSSVRSLTYKLASGPSKRGPGH 93

BLAST of Tan0000182 vs. ExPASy TrEMBL
Match: F6GZW6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g09680 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 6  SATASAKRLCFFVGVLLMVASTHFLTVEGRVMKSVAD--GKEKIEAVEPIGVAAYMAKVD 65
          SAT S K L F + VL++V ST    V  R ++S  D      I+  E +GVA   A V 
Sbjct: 7  SATRSVKSLWFVLAVLVLVVSTQSSFVHCRALRSTVDVAAAAAIQGDESVGVANSFA-VS 66

Query: 66 SLSSSSRNAFRSLSFVLASGPSKKGPGH 92
          S +SS R++ RSL++ LASGPSK+GPGH
Sbjct: 67 SNNSSKRSSVRSLTYKLASGPSKRGPGH 93

BLAST of Tan0000182 vs. ExPASy TrEMBL
Match: A0A5J5WZ42 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A01G124100v1 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.3e-06
Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = 0

Query: 1  MAMELSATASAKRLCFFVGVLLMVASTHF-LTVEGRVMKS---VADGKEKIEAVEPIGVA 60
          + M  +++AS +RL F +GVL ++ ST   + V GR ++S   V  G E  E    +GV 
Sbjct: 2  LRMTKNSSASMQRLVFMMGVLALLVSTELVIAVHGRTLRSTTMVVGGCE--EQAGRMGVL 61

Query: 61 AYMA-KVDSLSSSSRNAFRSLSFVLASGPSKKGPGH 92
          ++ A    + SS+SRN+FRSL F LASGPSK+GPGH
Sbjct: 62 SFGALSAANHSSNSRNSFRSLGFRLASGPSKRGPGH 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6591405.12.0e-2675.79hypothetical protein SDJN03_13751, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6608443.14.0e-2270.33hypothetical protein SDJN03_01785, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN55240.11.0e-1763.16hypothetical protein Csa_012906 [Cucumis sativus][more]
KAA0064422.13.7e-1264.38hypothetical protein E6C27_scaffold255G001300 [Cucumis melo var. makuwa] >TYK201... [more]
XP_019071956.15.2e-0646.59PREDICTED: uncharacterized protein LOC109121646 [Vitis vinifera] >RVW40478.1 hyp... [more]
Match NameE-valueIdentityDescription
A0A0A0KZV64.9e-1863.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G641720 PE=4 SV=1[more]
A0A5D3D9C41.8e-1264.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A438DYT82.5e-0646.59Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_024839 PE=4 SV=1[more]
F6GZW62.5e-0646.59Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g09680 PE=4 SV=... [more]
A0A5J5WZ424.3e-0644.79Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A01G124100v1 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0000182.1Tan0000182.1mRNA