Tan0000166 (gene) Snake gourd v1

Overview


Name	Tan0000166
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	LysM domain-containing protein
Location	LG01: 2566380 .. 2567304 (+)
RNA-Seq Expression	Tan0000166
Synteny	Tan0000166

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGAAGGAGTTGGAAGGGTGATTTTGCAGTTGAGAGAATTAGTTGAGACGACTTCAAAAACCAATCCAAAAATTAGAACTCAAGTCGTGGTAAGGTAAGCTCTGCTCAACGTCCTCCCCAATTCAAAATCCTCTTTTAATGTTTCTCTCTCCCCTCTCATAAATGATAAAACAAAATCATTTCTATAAATAACTAATTCTGAATTCTCTCCTTCTCCATTTTATTTTACACTTTCCCTACCATTCACCATGGCCGCCGCCGCCTCTATTTCCAGAAGCAGCTACAGAGCTACGCCACCACGCCCCCTAATCGACGTCGTTTCGTGGTACTGCGCCCTGGGCCTTTTGGGCCTGATTTTGATCGGCTCCATCAGAGACAGCTCCTTCTCCTCCGCGGCCACCGCCGGGATGCTCAGAGGGAACTTGCTGACGGAGCGGCGGCCGTGCGACGAGATTTATGTCGTCGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTCATCAAAATTATCTCCTCTTCCAAGCCTACCAATTTCGGATGATTTCTTTTTCTTTCTTTTTTACCTTTTCCTTTTGAATAAAATAAATTCTGAGAAATAATAATATAAACTCTTCGGAGTTTCAGGCCATTTTATACCCCTCCAAAAAAAAAAAAATTTAACTCAAAATTTTAGAATCTGTTTATAATTTCCGAGACAGACATAGTTATATATGTATATGTGATATATCGAGGTTTAATTTGTGTTTTTTTCTTTTTTCTTTAAGGATATAGAGGTAAAAGATGGCGGATCTTCGCTCGCATGTATATCATAATTAATATAAATATTTGAGAGGAAGAATGTTTATTTGTAA

mRNA sequence

TTAGAAGGAGTTGGAAGGGTGATTTTGCAGTTGAGAGAATTAGTTGAGACGACTTCAAAAACCAATCCAAAAATTAGAACTCAAGTCGTGGTAAGGTAAGCTCTGCTCAACGTCCTCCCCAATTCAAAATCCTCTTTTAATGTTTCTCTCTCCCCTCTCATAAATGATAAAACAAAATCATTTCTATAAATAACTAATTCTGAATTCTCTCCTTCTCCATTTTATTTTACACTTTCCCTACCATTCACCATGGCCGCCGCCGCCTCTATTTCCAGAAGCAGCTACAGAGCTACGCCACCACGCCCCCTAATCGACGTCGTTTCGTGGTACTGCGCCCTGGGCCTTTTGGGCCTGATTTTGATCGGCTCCATCAGAGACAGCTCCTTCTCCTCCGCGGCCACCGCCGGGATGCTCAGAGGGAACTTGCTGACGGAGCGGCGGCCGTGCGACGAGATTTATGTCGTCGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTCATCAAAATTATCTCCTCTTCCAAGCCTACCAATTTCGGATGATTTCTTTTTCTTTCTTTTTTACCTTTTCCTTTTGAATAAAATAAATTCTGAGAAATAATAATATAAACTCTTCGGAGTTTCAGGCCATTTTATACCCCTCCAAAAAAAAAAAAATTTAACTCAAAATTTTAGAATCTGTTTATAATTTCCGAGACAGACATAGTTATATATGTATATGTGATATATCGAGGTTTAATTTGTGTTTTTTTCTTTTTTCTTTAAGGATATAGAGGTAAAAGATGGCGGATCTTCGCTCGCATGTATATCATAATTAATATAAATATTTGAGAGGAAGAATGTTTATTTGTAA

Coding sequence (CDS)

ATGGCCGCCGCCGCCTCTATTTCCAGAAGCAGCTACAGAGCTACGCCACCACGCCCCCTAATCGACGTCGTTTCGTGGTACTGCGCCCTGGGCCTTTTGGGCCTGATTTTGATCGGCTCCATCAGAGACAGCTCCTTCTCCTCCGCGGCCACCGCCGGGATGCTCAGAGGGAACTTGCTGACGGAGCGGCGGCCGTGCGACGAGATTTATGTCGTCGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTCATCAAAATTATCTCCTCTTCCAAGCCTACCAATTTCGGATGA

Protein sequence

MAAAASISRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSKPTNFG

Homology

[Close]

BLAST of Tan0000166 vs. NCBI nr
Match: XP_008439155.1 (PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Peptidoglycan-binding LysM domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 7.4e-40
Identity = 87/112 (77.68%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 8   SRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCD 67
           SR    ++  RPLIDVVSWYCA+GLLGLILIGSIR++S SS      LRGNL+T  RPCD
Sbjct: 9   SRRPQYSSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSGDQGRSLRGNLVT-WRPCD 68

Query: 68  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSKPTN 120
           EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+SS   N
Sbjct: 69  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHNN 119

[Close]

BLAST of Tan0000166 vs. NCBI nr
Match: KGN57357.2 (hypothetical protein Csa_009741 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 8.1e-39
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 6   SISRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRP 65
           S+ RS    +  RPLIDVVSWYCA+GLLGLILIGSIR++  SS+    +LRGNL+T  RP
Sbjct: 11  SVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRET--SSSGDGRLLRGNLVT-WRP 70

Query: 66  CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSKPTN 120
           CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+SS   N
Sbjct: 71  CDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIASSTHIN 121

[Close]

BLAST of Tan0000166 vs. NCBI nr
Match: XP_004150301.1 (uncharacterized protein LOC101210054 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 8.1e-39
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 6   SISRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRP 65
           S+ RS    +  RPLIDVVSWYCA+GLLGLILIGSIR++  SS+    +LRGNL+T  RP
Sbjct: 5   SVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRET--SSSGDGRLLRGNLVT-WRP 64

Query: 66  CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSKPTN 120
           CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+SS   N
Sbjct: 65  CDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIASSTHIN 115

[Close]

BLAST of Tan0000166 vs. NCBI nr
Match: KAG6576752.1 (hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014795.1 hypothetical protein SDJN02_22424, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 2.4e-38
Identity = 89/114 (78.07%), Postives = 93/114 (81.58%), Query Frame = 0


Query: 13  RATPP--RPLIDVVSWYCALGLLGLILIGSIRDSSFSSAAT---AGMLRGNLLTERRPCD 72
           R  PP  R LIDVVSWYCAL LLGLILIGSIR++S SSA+      MLRGNLLT  R CD
Sbjct: 8   RTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLT-GRACD 67

Query: 73  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSKPTNFG 122
           EIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS  P   G
Sbjct: 68  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLG 120

[Close]

BLAST of Tan0000166 vs. NCBI nr
Match: XP_022157015.1 (uncharacterized protein LOC111023841 [Momordica charantia])

HSP 1 Score: 168.7 bits (426), Expect = 3.1e-38
Identity = 83/109 (76.15%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 14  ATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSS-AATAGMLRGNLLTERRPCDEIYVV 73
           A   RP  DVVSWYCA+G+L LILIGSIR+S++S+ AA  G L    L   RPCDEIYVV
Sbjct: 13  APSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVV 72

Query: 74  GEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSKPTNFG 122
           GEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS P+N G
Sbjct: 73  GEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPSNSG 121

[Close]

BLAST of Tan0000166 vs. ExPASy TrEMBL
Match: A0A5A7VAP9 (Peptidoglycan-binding LysM domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7478G00010 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.6e-40
Identity = 87/112 (77.68%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 8   SRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCD 67
           SR    ++  RPLIDVVSWYCA+GLLGLILIGSIR++S SS      LRGNL+T  RPCD
Sbjct: 9   SRRPQYSSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSGDQGRSLRGNLVT-WRPCD 68

Query: 68  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSKPTN 120
           EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+SS   N
Sbjct: 69  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHNN 119

[Close]

BLAST of Tan0000166 vs. ExPASy TrEMBL
Match: A0A1S3AXP2 (uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 3.6e-40
Identity = 87/112 (77.68%), Postives = 94/112 (83.93%), Query Frame = 0


Query: 8   SRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCD 67
           SR    ++  RPLIDVVSWYCA+GLLGLILIGSIR++S SS      LRGNL+T  RPCD
Sbjct: 9   SRRPQYSSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSGDQGRSLRGNLVT-WRPCD 68

Query: 68  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSKPTN 120
           EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+SS   N
Sbjct: 69  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASSTHNN 119

[Close]

BLAST of Tan0000166 vs. ExPASy TrEMBL
Match: A0A0A0L5R9 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.9e-39
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 6   SISRSSYRATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRP 65
           S+ RS    +  RPLIDVVSWYCA+GLLGLILIGSIR++  SS+    +LRGNL+T  RP
Sbjct: 5   SVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRET--SSSGDGRLLRGNLVT-WRP 64

Query: 66  CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSKPTN 120
           CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+SS   N
Sbjct: 65  CDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIASSTHIN 115

[Close]

BLAST of Tan0000166 vs. ExPASy TrEMBL
Match: A0A6J1J769 (uncharacterized protein LOC111483184 OS=Cucurbita maxima OX=3661 GN=LOC111483184 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 87/113 (76.99%), Postives = 94/113 (83.19%), Query Frame = 0


Query: 13  RATPP--RPLIDVVSWYCALGLLGLILIGSIRDSSFSSAATAG--MLRGNLLTERRPCDE 72
           R  PP  R LIDVVSWYCA+ +LGLILIGSIR++S S++A  G  MLRGNLLT  R CDE
Sbjct: 8   RTEPPSSRLLIDVVSWYCAVAILGLILIGSIRETSSSASADDGSQMLRGNLLT-GRACDE 67

Query: 73  IYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSKPTNFG 122
           IYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS  P   G
Sbjct: 68  IYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLG 119

[Close]

BLAST of Tan0000166 vs. ExPASy TrEMBL
Match: A0A6J1DRZ3 (uncharacterized protein LOC111023841 OS=Momordica charantia OX=3673 GN=LOC111023841 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 83/109 (76.15%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 14  ATPPRPLIDVVSWYCALGLLGLILIGSIRDSSFSS-AATAGMLRGNLLTERRPCDEIYVV 73
           A   RP  DVVSWYCA+G+L LILIGSIR+S++S+ AA  G L    L   RPCDEIYVV
Sbjct: 13  APSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVV 72

Query: 74  GEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSKPTNFG 122
           GEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS P+N G
Sbjct: 73  GEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPSNSG 121

[Close]

BLAST of Tan0000166 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 117.9 bits (294), Expect = 5.8e-27
Identity = 56/90 (62.22%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 22  DVVSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLLTERRPCDEIYVVGEGETLHTI 81
           D+ +W  A+ LL LIL+ S+R+++ S++     +RG+  +  +PC+EIY+VGEGETLHTI
Sbjct: 10  DMSAWCSAVVLLSLILLLSVRENNASNS-----IRGSQFS-TKPCEEIYIVGEGETLHTI 69

Query: 82  SDKCGDPFIVERNPHIHDPDDVFPGLVIKI 112
            DKCGDPFIVERNPHIHDPDDVFPGLV+KI
Sbjct: 70  GDKCGDPFIVERNPHIHDPDDVFPGLVLKI 93

[Close]

BLAST of Tan0000166 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-25
Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 22  DVVSWYCALGLLGLILIGSIRDSS------FSSAATAGMLRGNLLTERRPCDEIYVVGEG 81
           + V+ YC + LL L L GS+++S+      +       + RG  + E RPC+E+YVVGEG
Sbjct: 10  NTVASYCLVALLILTLAGSVKNSNGGGSGEYYRGRNCEVWRGKQMME-RPCEELYVVGEG 69

Query: 82  ETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 112
           +TLH+IS+KCGDPFIVERNPHIHDPDDVFPGL+IK+
Sbjct: 70  DTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

[Close]

BLAST of Tan0000166 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-20
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 24  VSWYCALGLLGLILIGSIRDSSFSSAATAGMLRGNLL----TERRP-CDEIYVVGEGETL 83
           +SWYCA+    ++L+ S + +   S       + +++    + RRP CDEIY V EGETL
Sbjct: 13  ISWYCAVFAAMMLLMNSFQVAQEGSTEIVEKQQPSMMITGYSHRRPACDEIYEVKEGETL 72

Query: 84  HTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS 115
            TIS+KCGDP+IVE NPHIHD DD+FPGL+I+I  S
Sbjct: 73  QTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPS 108

The following BLAST results are available for this feature:

BLAST of Tan0000166 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0000166 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439155.1	7.4e-40	77.68	PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Pep...	[more]
KGN57357.2	8.1e-39	75.44	hypothetical protein Csa_009741 [Cucumis sativus]	[more]
XP_004150301.1	8.1e-39	75.44	uncharacterized protein LOC101210054 [Cucumis sativus]	[more]
KAG6576752.1	2.4e-38	78.07	hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022157015.1	3.1e-38	76.15	uncharacterized protein LOC111023841 [Momordica charantia]	[more]

BLAST of Tan0000166 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAP9	3.6e-40	77.68	Peptidoglycan-binding LysM domain-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3AXP2	3.6e-40	77.68	uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=...	[more]
A0A0A0L5R9	3.9e-39	75.44	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 S...	[more]
A0A6J1J769	1.5e-38	76.99	uncharacterized protein LOC111483184 OS=Cucurbita maxima OX=3661 GN=LOC111483184...	[more]
A0A6J1DRZ3	1.5e-38	76.15	uncharacterized protein LOC111023841 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Tan0000166 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62150.1	5.8e-27	62.22	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	2.4e-25	56.25	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	1.8e-20	50.00	peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 61..119 e-value: 3.7E-7 score: 31.6
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 70..111 e-value: 2.1E-4 score: 21.3
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 69..111 e-value: 2.65389E-5 score: 37.0797
None	No IPR available	PANTHER	PTHR33648	EMBRYO SAC 1	coord: 19..116
None	No IPR available	PANTHER	PTHR33648:SF31	PROTEIN, PUTATIVE-RELATED	coord: 19..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000166.1	Tan0000166.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity