Spg040010 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg040010
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Histone-lysine N-methyltransferase ASHH3
Location	scaffold10: 24706903 .. 24710652 (+)
RNA-Seq Expression	Spg040010
Synteny	Spg040010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GACCTTCGTCATTTTTTTCGGCTACAGTAACCAACTCTACTCTCTCACTCATTTCTTTCAACTCAATTTCTGCAATTTTTCTCTTCGTTCGGCATTCAAGCACATCAGCACCAATCAGTTCTCTCCCCATGGCTACAAGCTCTCCATCCAGGTATTAATCTTCGATCTTCTCCTCTTGTAGTCCTTCCCTGTACCCTGAATTTGTGAATTAACCAACAGTTCCCGAAATTTCTTCAGTGTTTCACTGTTGTCATCTTTGTCGCAGGAGAGTGCCTTTTCTCCGCTTTCATTTGTTTTGCGTTTTTAGCCCTTTTCATTTTCATTTCCCCCTTTTCCGTTCGTTATGATCTAGTTGCTAGCGGTGTTTTGTTTTCCAGATCTTTTAGCGGGGCTTGATTTTTTATACTTTATTTTCCTTCTGTAATTTGGTTAATGCATATTCGGACACTTTTGTTGCCTTTTTGTGTAAAATTCTGATGGGTGTTGCTTCAGGATTTTGTATTTTTACTCTTACTATGTATTACAGTGCATCTTACTTATCTAATCTTATCGGCTTGGAGTCCAACTTCTGCTTCAAGAACGCTGCATTGAGAGTCAGTTTAATTATCTGTTTTTTCACCTATAATTCGCTGGAAAATAATTGTATCCTGTGTTTTCTTCACGCCTGTCTTATGGTGGCTACAATTCACTGGAAAAGAATTTTATTTTTGAGTTCAGCAAACCTTGACCTTTTGACTGAGGTTATAATGCCTTCACTTCACTAGTGCTCAAGTTGGCAATTCACTGGAAAAAAAATTGCTATCACATAGTTTTTCACTCATAGGTTCTGGAGGTGGTACAAGGACTTGTTTGCCTTTACTGACCACGTTTCAATTAACATTGCACGCAAACTATTTGCTCTCAGATTTTGGATTATATACGCAACTTTTTCCTCATTTTGGAAGCTAACCTGCAGGTTTGATTTCGTCAACAAATGATTAACCTGTTCCTGAGTGGAAACTCTTCCTGAGTCATGCCTGCTATAAAAAAGGTATTTCCTTATTTCTTTTGATAAGAAGTCCAATGTTTTATTGTTTTTTGTTAATTGATCTTTGCTTATGTTCCATGTATCTGTTCCATTCCTATTTATGTTAAGAGAAGAGAAGATGATCTTTAATATATGTATTAGTTTTGCATTGTCCATTCTGGTTTAGCTTGAAGTTGACATATAGTAGAGTAGATAGTTTCTCTATATATTAGCTAGTGGTGTCTGTAGTGATTCATCAACTTTTGTTTAATCGCCAAAATTTGTCTTTTTGAAGAAATTCTTTGAATCAAAGTAGTAGATGAGTTTGATTCTATGTGCAATTGATCCTAGATGTCTATACTACATTTGTTTTTCTTGTGGGGTTTTAACAATTTGGATTCTTCAATCATGTGGGCGTATTTCCTTCCATATCTTATTTTATTATTATTATTTGAGTCTACATGTTATCTTGCTTTATCCTGGAGTAAATTGTCCCCCCTTTTGTAATTATGGCTTATCATCTCTCTTGACCCATTGGAGGTCTTTCTTGTAATTATCATCGATAAGATTTTTTTTTGTATCTATTTCATACATCAATGAAATGATTTTTGTTTCCTATAAAAAAAAAAAAAGAAAAAAAAATTCTGTCAACATTTCATTTAATATACATTTTCTTTTGAACAAGAAACAGAACCTTTCATTAACATAATGATAAGAGACTAATCCTTTAAAACTGAGGCATGAATATTCTAATCTAATTTGGTTAAATGGGGTTTGGTTCCAAGATTCATGTATTTCTTTGACCTTTAAATCTCAGAAGCAGGAATGTTTAGTAGTAGTGGTAAATACTAAACGAATGTTCAAGGAGGGCAAGAGGTTTTAGAAAGACAACGTTAAAGTCAATCACAGAATAAAAGGGTGAAGGTTGGATCTATAAAAATTTTCAATCTATTCCTACTTTCTCCAAAATTTCGTATTTATCTAAAAAATCTTAAATTACACTTCCAAGCACACATAAATAAAAAAATACATAACAAAATTGAGAGATCTATTTGAAAGAGGTGCCATTTTTGGTCCCTTTTGTGAAGGGTATCCTAGTATAGGACATAATTACGTCTGATTATATTTGTAGACTGCAAAATTGAACTGGAGTTTGTAACACACTTATCGAGAAAAAGATTCAATCAAGAATAAAGACCATAATTTTTTCTCACTTGAAACTGTAGATGCAATATGCTCTGGCATTTAGTTAATTTAATTCCTGCAATCTTTGCAATGGTGAAGTGTCCGATTGATATTAATTAATTTTTCTTTGGATTAAGCAGATGTGATGATGATTGTAAATTTTCACAATTGCAATAAGAAGTTCTTATTTATTTTCAAAAGAAATAAATAATAAACACAACATGATGAGGTATTGCAGAGCACTTTTCTTGCATGGTCATATCTTATATCACATTATGATATTTTCTCTGGTTTGTCCTCAAGGAAGTGGGAGTCTGAAAGTATATAGTTGCTCCCTTATGGATTGAGAGAGGGGAAAAAAATATTTGAAGACAAGTTTGACATGGTTATCAATGTTTGGGCCAGAAATGGCTAGTTGATCATTCAGTACCTTTCCTTTCAAATATACAACACTCTTTGATGTTTGGAGTCAAAATAAGAAAAAAGAATTACTCTGTATCCTTGTAGATTTTCCCAACATTGCTCACCCCTCCAAAGTAGTAAATGTTCAAGAGTAGACAAACTATTTCTGCCGTCTTTTAAGAATGGGTTTTTAGAATTTTAATCCTTTAACTGTGTCTTGTAAACTTATTTTGCTTTGCTATAAAGTTTCATGTAAATTTTTCTTATGGGGAGGTGTTGAAGAGGGGAAGGATCTCATTTGATTAGATGGGAGGTGGTCTCAAGGCCTTTAGATTTAGGGGGTTTGGGCATTGTTAACCTGAGATTGCACAATGAGGCATTGTTAGCTAAGTGGTTGTGGCACTTCTTTATGGAGCTTAATGTTTTGTGGCATACGGTCATTGTGAGTAAGTACGACCGGCACCCTTTTGGATGAGTTTCAATTTATGGGTCTTAGAGCTCTTCTAAAAACCCTAGAATGCTATATCAACTTCCCTTTCTTCTCCAAGTGTTTGAAATGTTCCTTTTTCATTTGAGTGTACAACGTAATCTACTATGTCAAACTTCAAAACTAATGAACACGTGAGAAACCCATATCAAAAGTTACAAAAAACAATCAGACAAACGAAAATAAAATTAACATATTCTAGACAGTCAAACTTTCTATTATTTAGAATGAAAAAATGATTTTTGTAAGAATTTCCAATTCTAGTTTAAGTGAGCAATTCTTATTTAATGATAGAAAATGTTAATTTTAGTTTAAGCTTTCTTATTTGAGTTTTATTATCATAAATGTACTTTTTTCTTAGTCCAATCTAGGTTTTTCTTTTCTTCGATCTGGTCGTATTGTTATGGATATTTGTTAAGTTAGCCTGTAAGGTTTTATAGATTTGCGATTTATTTTCATTATCTGGTCATTTTATTGCACAAAAACTGAGTCAAGTTCTCACTCATGCCATTTCCCATTTGATTAGAATTCTGAATGCAGTCGGATTGGGAATGTTTTCCACAAGTTGATGAGGCAGATTGGAAATCCAGTTGACTTTGAACTTCCTGATTGGTTTAGTAAATGGAAGCCTATGCCGTATACCTTCATTAGGCGTAGTATCCTTTTCTAG

mRNA sequence

ATGGCTACAAGCTCTCCATCCAGGAGAGTGCCTTTTCTCCGCTTTCATTTTGCATCTTACTTATCTAATCTTATCGGCTTGGAGTCCAACTTCTGCTTCAAGAACGCTGCATTGAGAAATTCTGAATGCAGTCGGATTGGGAATGTTTTCCACAAGTTGATGAGGCAGATTGGAAATCCAGTTGACTTTGAACTTCCTGATTGGTTTAGTAAATGGAAGCCTATGCCGTATACCTTCATTAGGCGTAGTATCCTTTTCTAG

Coding sequence (CDS)

ATGGCTACAAGCTCTCCATCCAGGAGAGTGCCTTTTCTCCGCTTTCATTTTGCATCTTACTTATCTAATCTTATCGGCTTGGAGTCCAACTTCTGCTTCAAGAACGCTGCATTGAGAAATTCTGAATGCAGTCGGATTGGGAATGTTTTCCACAAGTTGATGAGGCAGATTGGAAATCCAGTTGACTTTGAACTTCCTGATTGGTTTAGTAAATGGAAGCCTATGCCGTATACCTTCATTAGGCGTAGTATCCTTTTCTAG

Protein sequence

MATSSPSRRVPFLRFHFASYLSNLIGLESNFCFKNAALRNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRSILF

Homology

[Close]

BLAST of Spg040010 vs. NCBI nr
Match: XP_011649104.2 (histone-lysine N-methyltransferase ASHH3 [Cucumis sativus] >XP_031736657.1 histone-lysine N-methyltransferase ASHH3 [Cucumis sativus] >XP_031736658.1 histone-lysine N-methyltransferase ASHH3 [Cucumis sativus] >KAE8651775.1 hypothetical protein Csa_006285 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 5.1e-19
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 36 AALRNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRSI 85
          A  +NSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRR+I
Sbjct: 3  AIKKNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRNI 51

[Close]

BLAST of Spg040010 vs. NCBI nr
Match: XP_038907270.1 (histone-lysine N-methyltransferase ASHH3 [Benincasa hispida] >XP_038907271.1 histone-lysine N-methyltransferase ASHH3 [Benincasa hispida])

HSP 1 Score: 104.0 bits (258), Expect = 6.6e-19
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 36 AALRNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRSI 85
          A  +NSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRR++
Sbjct: 3  AIKKNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRNV 51

[Close]

BLAST of Spg040010 vs. NCBI nr
Match: XP_022155983.1 (histone-lysine N-methyltransferase ASHH3 isoform X3 [Momordica charantia])

HSP 1 Score: 104.0 bits (258), Expect = 6.6e-19
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 38 LRNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRSI 85
          +RNSECSRIGNVFHKLMRQIGNPVDFELPDWF+KWKPMPYTFIRR++
Sbjct: 12 VRNSECSRIGNVFHKLMRQIGNPVDFELPDWFNKWKPMPYTFIRRNV 58

[Close]

BLAST of Spg040010 vs. NCBI nr
Match: XP_022155981.1 (histone-lysine N-methyltransferase ASHH3 isoform X1 [Momordica charantia])

HSP 1 Score: 104.0 bits (258), Expect = 6.6e-19
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 38 LRNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRSI 85
          +RNSECSRIGNVFHKLMRQIGNPVDFELPDWF+KWKPMPYTFIRR++
Sbjct: 12 VRNSECSRIGNVFHKLMRQIGNPVDFELPDWFNKWKPMPYTFIRRNV 58

[Close]

BLAST of Spg040010 vs. NCBI nr
Match: XP_022155984.1 (histone-lysine N-methyltransferase ASHH3 isoform X4 [Momordica charantia] >XP_022155985.1 histone-lysine N-methyltransferase ASHH3 isoform X4 [Momordica charantia] >XP_022155986.1 histone-lysine N-methyltransferase ASHH3 isoform X4 [Momordica charantia])

HSP 1 Score: 104.0 bits (258), Expect = 6.6e-19
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 38 LRNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRSI 85
          +RNSECSRIGNVFHKLMRQIGNPVDFELPDWF+KWKPMPYTFIRR++
Sbjct: 12 VRNSECSRIGNVFHKLMRQIGNPVDFELPDWFNKWKPMPYTFIRRNV 58

[Close]

BLAST of Spg040010 vs. ExPASy Swiss-Prot
Match: Q945S8 (Histone-lysine N-methyltransferase ASHH3 OS=Arabidopsis thaliana OX=3702 GN=ASHH3 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-08
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 36 AALRNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRSI 85
          A+ + S+ + +G VF KL+ QIG   +FELP+W +K KP PY FIRR+I
Sbjct: 3  ASKKISDRNHLGQVFDKLLNQIGESEEFELPEWLNKGKPTPYIFIRRNI 51

[Close]

BLAST of Spg040010 vs. ExPASy TrEMBL
Match: A0A6J1DP14 (histone-lysine N-methyltransferase ASHH3 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111022963 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.2e-19
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 38 LRNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRSI 85
          +RNSECSRIGNVFHKLMRQIGNPVDFELPDWF+KWKPMPYTFIRR++
Sbjct: 12 VRNSECSRIGNVFHKLMRQIGNPVDFELPDWFNKWKPMPYTFIRRNV 58

[Close]

BLAST of Spg040010 vs. ExPASy TrEMBL
Match: A0A6J1DTC5 (histone-lysine N-methyltransferase ASHH3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022963 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.2e-19
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 38 LRNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRSI 85
          +RNSECSRIGNVFHKLMRQIGNPVDFELPDWF+KWKPMPYTFIRR++
Sbjct: 12 VRNSECSRIGNVFHKLMRQIGNPVDFELPDWFNKWKPMPYTFIRRNV 58

[Close]

BLAST of Spg040010 vs. ExPASy TrEMBL
Match: A0A6J1DPC8 (histone-lysine N-methyltransferase ASHH3 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111022963 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.2e-19
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 38 LRNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRSI 85
          +RNSECSRIGNVFHKLMRQIGNPVDFELPDWF+KWKPMPYTFIRR++
Sbjct: 12 VRNSECSRIGNVFHKLMRQIGNPVDFELPDWFNKWKPMPYTFIRRNV 58

[Close]

BLAST of Spg040010 vs. ExPASy TrEMBL
Match: A0A6J1HXC5 (histone-lysine N-methyltransferase ASHH3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468902 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.2e-19
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 36 AALRNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRSI 85
          A  +NSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKP+PYTFIRR++
Sbjct: 3  AIKKNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPLPYTFIRRNV 51

[Close]

BLAST of Spg040010 vs. ExPASy TrEMBL
Match: A0A6J1ESV1 (histone-lysine N-methyltransferase ASHH3 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435694 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.2e-19
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 36 AALRNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRSI 85
          A  +NSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKP+PYTFIRR++
Sbjct: 3  AIKKNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPLPYTFIRRNV 51

[Close]

BLAST of Spg040010 vs. TAIR 10
Match: AT2G44150.1 (histone-lysine N-methyltransferase ASHH3 )

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-09
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 36 AALRNSECSRIGNVFHKLMRQIGNPVDFELPDWFSKWKPMPYTFIRRSI 85
          A+ + S+ + +G VF KL+ QIG   +FELP+W +K KP PY FIRR+I
Sbjct: 3  ASKKISDRNHLGQVFDKLLNQIGESEEFELPEWLNKGKPTPYIFIRRNI 51

The following BLAST results are available for this feature:

BLAST of Spg040010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649104.2	5.1e-19	91.84	histone-lysine N-methyltransferase ASHH3 [Cucumis sativus] >XP_031736657.1 histo...	[more]
XP_038907270.1	6.6e-19	89.80	histone-lysine N-methyltransferase ASHH3 [Benincasa hispida] >XP_038907271.1 his...	[more]
XP_022155983.1	6.6e-19	91.49	histone-lysine N-methyltransferase ASHH3 isoform X3 [Momordica charantia]	[more]
XP_022155981.1	6.6e-19	91.49	histone-lysine N-methyltransferase ASHH3 isoform X1 [Momordica charantia]	[more]
XP_022155984.1	6.6e-19	91.49	histone-lysine N-methyltransferase ASHH3 isoform X4 [Momordica charantia] >XP_02...	[more]

BLAST of Spg040010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q945S8	2.5e-08	51.02	Histone-lysine N-methyltransferase ASHH3 OS=Arabidopsis thaliana OX=3702 GN=ASHH...	[more]

BLAST of Spg040010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DP14	3.2e-19	91.49	histone-lysine N-methyltransferase ASHH3 isoform X4 OS=Momordica charantia OX=36...	[more]
A0A6J1DTC5	3.2e-19	91.49	histone-lysine N-methyltransferase ASHH3 isoform X1 OS=Momordica charantia OX=36...	[more]
A0A6J1DPC8	3.2e-19	91.49	histone-lysine N-methyltransferase ASHH3 isoform X3 OS=Momordica charantia OX=36...	[more]
A0A6J1HXC5	7.2e-19	87.76	histone-lysine N-methyltransferase ASHH3 isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1ESV1	7.2e-19	87.76	histone-lysine N-methyltransferase ASHH3 isoform X1 OS=Cucurbita moschata OX=366...	[more]

BLAST of Spg040010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44150.1	1.7e-09	51.02	histone-lysine N-methyltransferase ASHH3	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg040010.1	Spg040010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010452	histone H3-K36 methylation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046975	histone methyltransferase activity (H3-K36 specific)