Spg039941 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg039941
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMyb family transcription factor family protein
Locationscaffold10: 43195020 .. 43195289 (+)
RNA-Seq ExpressionSpg039941
SyntenySpg039941
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGTGCCGGATCCCGTCTGGGAAGGCCATTTTTACTATGACGCCGCTACTGCAGTCGCCACGGACAGCTCGCAGCTGTCCGGGTATCTGCAGTGGTTGGAGGAGAGAAAATTGGAGAGCGAGACGACGACGGTGACGACAACGACCGAGATGAATGAGATCGACAAGTTGGCGGAGATGTTCATAGCAAGCTGCCATGAGAAATTCAGGCTGGAGAAACAGGAATCAGCAAGAAGATTTCAAGAGATGATGGCTAGAAGCATGTGA

mRNA sequence

ATGCCTGTGCCGGATCCCGTCTGGGAAGGCCATTTTTACTATGACGCCGCTACTGCAGTCGCCACGGACAGCTCGCAGCTGTCCGGGTATCTGCAGTGGTTGGAGGAGAGAAAATTGGAGAGCGAGACGACGACGGTGACGACAACGACCGAGATGAATGAGATCGACAAGTTGGCGGAGATGTTCATAGCAAGCTGCCATGAGAAATTCAGGCTGGAGAAACAGGAATCAGCAAGAAGATTTCAAGAGATGATGGCTAGAAGCATGTGA

Coding sequence (CDS)

ATGCCTGTGCCGGATCCCGTCTGGGAAGGCCATTTTTACTATGACGCCGCTACTGCAGTCGCCACGGACAGCTCGCAGCTGTCCGGGTATCTGCAGTGGTTGGAGGAGAGAAAATTGGAGAGCGAGACGACGACGGTGACGACAACGACCGAGATGAATGAGATCGACAAGTTGGCGGAGATGTTCATAGCAAGCTGCCATGAGAAATTCAGGCTGGAGAAACAGGAATCAGCAAGAAGATTTCAAGAGATGATGGCTAGAAGCATGTGA

Protein sequence

MPVPDPVWEGHFYYDAATAVATDSSQLSGYLQWLEERKLESETTTVTTTTEMNEIDKLAEMFIASCHEKFRLEKQESARRFQEMMARSM
Homology
BLAST of Spg039941 vs. NCBI nr
Match: XP_023548199.1 (uncharacterized protein LOC111806908 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548209.1 uncharacterized protein LOC111806908 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.3 bits (386), Expect = 9.9e-34
Identity = 82/92 (89.13%), Postives = 82/92 (89.13%), Query Frame = 0

Query: 1   MPVPDPVWEGHFYYDAATAVATDSSQLSGYLQWLEERKLESET---TTVTTTTEMNEIDK 60
           MPVPDPVWEGHFYYDAATA   DSSQLSGYLQWLEERKLESET    T T  TEMNEIDK
Sbjct: 92  MPVPDPVWEGHFYYDAATA---DSSQLSGYLQWLEERKLESETAAGVTTTMATEMNEIDK 151

Query: 61  LAEMFIASCHEKFRLEKQESARRFQEMMARSM 90
           LAEMFIASCHEKFRLEKQESARRFQEMMARSM
Sbjct: 152 LAEMFIASCHEKFRLEKQESARRFQEMMARSM 180

BLAST of Spg039941 vs. NCBI nr
Match: XP_022961611.1 (uncharacterized protein LOC111462262 [Cucurbita moschata] >KAG6602421.1 hypothetical protein SDJN03_07654, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.9 bits (385), Expect = 1.3e-33
Identity = 82/91 (90.11%), Postives = 82/91 (90.11%), Query Frame = 0

Query: 1   MPVPDPVWEGHFYYDAATAVATDSSQLSGYLQWLEERKLESETTTVTTT--TEMNEIDKL 60
           MPVPDPVWEGHFYYDAATA   DSSQLSGYLQWLEERKLESET    TT  TEMNEIDKL
Sbjct: 92  MPVPDPVWEGHFYYDAATA---DSSQLSGYLQWLEERKLESETAAGVTTIATEMNEIDKL 151

Query: 61  AEMFIASCHEKFRLEKQESARRFQEMMARSM 90
           AEMFIASCHEKFRLEKQESARRFQEMMARSM
Sbjct: 152 AEMFIASCHEKFRLEKQESARRFQEMMARSM 179

BLAST of Spg039941 vs. NCBI nr
Match: KAG7033099.1 (hypothetical protein SDJN02_07152, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 3.8e-33
Identity = 81/91 (89.01%), Postives = 81/91 (89.01%), Query Frame = 0

Query: 1   MPVPDPVWEGHFYYDAATAVATDSSQLSGYLQWLEERKLESETTTVTTT--TEMNEIDKL 60
           MPVPDPVWEGHFYYD ATA   DSSQLSGYLQWLEERKLESET    TT  TEMNEIDKL
Sbjct: 92  MPVPDPVWEGHFYYDTATA---DSSQLSGYLQWLEERKLESETAAGVTTIATEMNEIDKL 151

Query: 61  AEMFIASCHEKFRLEKQESARRFQEMMARSM 90
           AEMFIASCHEKFRLEKQESARRFQEMMARSM
Sbjct: 152 AEMFIASCHEKFRLEKQESARRFQEMMARSM 179

BLAST of Spg039941 vs. NCBI nr
Match: XP_008458796.1 (PREDICTED: uncharacterized protein LOC103498096 [Cucumis melo] >KAA0037558.1 DUF761 domain-containing protein [Cucumis melo var. makuwa] >TYK03114.1 DUF761 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 148.7 bits (374), Expect = 2.4e-32
Identity = 78/93 (83.87%), Postives = 81/93 (87.10%), Query Frame = 0

Query: 1   MPVPDPVWE-GHFYYDAATAVATDSSQLSGYLQWLEERKLESE---TTTVTTTTEMNEID 60
           MPVPDP+WE GHFYYD AT+ A D SQLSGYLQWLEERKLESE   TTT  TT E+NEID
Sbjct: 95  MPVPDPIWELGHFYYDHATSTAADGSQLSGYLQWLEERKLESETMTTTTTATTAEVNEID 154

Query: 61  KLAEMFIASCHEKFRLEKQESARRFQEMMARSM 90
           KLAEMFIASCHEKFRLEKQESARRFQ MMARSM
Sbjct: 155 KLAEMFIASCHEKFRLEKQESARRFQAMMARSM 187

BLAST of Spg039941 vs. NCBI nr
Match: XP_038890518.1 (uncharacterized protein LOC120080048 [Benincasa hispida])

HSP 1 Score: 148.3 bits (373), Expect = 3.2e-32
Identity = 78/91 (85.71%), Postives = 79/91 (86.81%), Query Frame = 0

Query: 1   MPVPDPVWE-GHFYYDAATAVATDSSQLSGYLQWLEERKLESET-TTVTTTTEMNEIDKL 60
           MP+PDPVWE GHFYYD A     D SQLSGYLQWLEERKLESET TT  T TEMNEIDKL
Sbjct: 95  MPMPDPVWELGHFYYDHAATTTADGSQLSGYLQWLEERKLESETMTTTATMTEMNEIDKL 154

Query: 61  AEMFIASCHEKFRLEKQESARRFQEMMARSM 90
           AEMFIASCHEKFRLEKQESARRFQEMMARSM
Sbjct: 155 AEMFIASCHEKFRLEKQESARRFQEMMARSM 185

BLAST of Spg039941 vs. ExPASy TrEMBL
Match: A0A6J1HAU6 (uncharacterized protein LOC111462262 OS=Cucurbita moschata OX=3662 GN=LOC111462262 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.2e-34
Identity = 82/91 (90.11%), Postives = 82/91 (90.11%), Query Frame = 0

Query: 1   MPVPDPVWEGHFYYDAATAVATDSSQLSGYLQWLEERKLESETTTVTTT--TEMNEIDKL 60
           MPVPDPVWEGHFYYDAATA   DSSQLSGYLQWLEERKLESET    TT  TEMNEIDKL
Sbjct: 92  MPVPDPVWEGHFYYDAATA---DSSQLSGYLQWLEERKLESETAAGVTTIATEMNEIDKL 151

Query: 61  AEMFIASCHEKFRLEKQESARRFQEMMARSM 90
           AEMFIASCHEKFRLEKQESARRFQEMMARSM
Sbjct: 152 AEMFIASCHEKFRLEKQESARRFQEMMARSM 179

BLAST of Spg039941 vs. ExPASy TrEMBL
Match: A0A5D3BVA7 (DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00500 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 78/93 (83.87%), Postives = 81/93 (87.10%), Query Frame = 0

Query: 1   MPVPDPVWE-GHFYYDAATAVATDSSQLSGYLQWLEERKLESE---TTTVTTTTEMNEID 60
           MPVPDP+WE GHFYYD AT+ A D SQLSGYLQWLEERKLESE   TTT  TT E+NEID
Sbjct: 95  MPVPDPIWELGHFYYDHATSTAADGSQLSGYLQWLEERKLESETMTTTTTATTAEVNEID 154

Query: 61  KLAEMFIASCHEKFRLEKQESARRFQEMMARSM 90
           KLAEMFIASCHEKFRLEKQESARRFQ MMARSM
Sbjct: 155 KLAEMFIASCHEKFRLEKQESARRFQAMMARSM 187

BLAST of Spg039941 vs. ExPASy TrEMBL
Match: A0A1S3C8P2 (uncharacterized protein LOC103498096 OS=Cucumis melo OX=3656 GN=LOC103498096 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 78/93 (83.87%), Postives = 81/93 (87.10%), Query Frame = 0

Query: 1   MPVPDPVWE-GHFYYDAATAVATDSSQLSGYLQWLEERKLESE---TTTVTTTTEMNEID 60
           MPVPDP+WE GHFYYD AT+ A D SQLSGYLQWLEERKLESE   TTT  TT E+NEID
Sbjct: 95  MPVPDPIWELGHFYYDHATSTAADGSQLSGYLQWLEERKLESETMTTTTTATTAEVNEID 154

Query: 61  KLAEMFIASCHEKFRLEKQESARRFQEMMARSM 90
           KLAEMFIASCHEKFRLEKQESARRFQ MMARSM
Sbjct: 155 KLAEMFIASCHEKFRLEKQESARRFQAMMARSM 187

BLAST of Spg039941 vs. ExPASy TrEMBL
Match: A0A0A0KP26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523130 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 80/92 (86.96%), Postives = 82/92 (89.13%), Query Frame = 0

Query: 1   MPVPDPVWE-GHFYYDAATAVATDSSQLSGYLQWLEERKLESET-TTVT-TTTEMNEIDK 60
           MPVPDP+WE GHFYYD AT+ A D SQLSGYLQWLEERKLESET TT T TT EMNEIDK
Sbjct: 96  MPVPDPIWELGHFYYDHATSTAADGSQLSGYLQWLEERKLESETMTTATGTTAEMNEIDK 155

Query: 61  LAEMFIASCHEKFRLEKQESARRFQEMMARSM 90
           LAEMFIASCHEKFRLEKQESARRFQ MMARSM
Sbjct: 156 LAEMFIASCHEKFRLEKQESARRFQAMMARSM 187

BLAST of Spg039941 vs. ExPASy TrEMBL
Match: A0A6J1JV22 (uncharacterized protein LOC111487754 OS=Cucurbita maxima OX=3661 GN=LOC111487754 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.6e-32
Identity = 79/91 (86.81%), Postives = 80/91 (87.91%), Query Frame = 0

Query: 1   MPVPDPVWEGHFYYDAATAVATDSSQLSGYLQWLEERKLESETTTVTT--TTEMNEIDKL 60
           MPVPDPVWEG+FYYDAATA   D SQLSGYLQWLEERKLESET    T   TEMNEIDKL
Sbjct: 92  MPVPDPVWEGNFYYDAATA---DGSQLSGYLQWLEERKLESETGAGATMMATEMNEIDKL 151

Query: 61  AEMFIASCHEKFRLEKQESARRFQEMMARSM 90
           AEMFIASCHEKFRLEKQESARRFQEMMARSM
Sbjct: 152 AEMFIASCHEKFRLEKQESARRFQEMMARSM 179

BLAST of Spg039941 vs. TAIR 10
Match: AT3G57950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42180.1); Has 81 Blast hits to 81 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 4.6e-13
Identity = 44/91 (48.35%), Postives = 54/91 (59.34%), Query Frame = 0

Query: 1   MPVPDPVWEGHFYYDAATAVATDSSQLSGYLQWLEERKLE--SETTTVTTTTEMNEIDKL 60
           +PVP P     F          D SQLSGYL+WLE +K +   E   V      ++ID L
Sbjct: 94  VPVPQPF---PFPSSYINGEEEDDSQLSGYLEWLEHKKFDDVEEIGDVVADGGDDDIDHL 153

Query: 61  AEMFIASCHEKFRLEKQESARRFQEMMARSM 90
           A+MFIA+CHEKF LEK ES RRFQEM+ R +
Sbjct: 154 ADMFIANCHEKFLLEKVESYRRFQEMLERGL 181

BLAST of Spg039941 vs. TAIR 10
Match: AT5G06790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-09
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 0

Query: 3   VPDPVWEGHFYYDAATAVATDS---SQLSGYLQWLEERKLESETTTVTTTTEMNEIDKLA 62
           V +  WE  +  ++      D    SQLS YL+ LE++  + +     T T MNEIDKLA
Sbjct: 122 VHESTWESMYSTESMDGRDDDDQEPSQLSSYLRQLEDKVKDGQEE--ETETMMNEIDKLA 181

Query: 63  EMFIASCHEKFRLEKQESARRFQEMMARS 89
           + FIA+CHEKF LEK +S RR Q  + RS
Sbjct: 182 DRFIANCHEKFMLEKVDSYRRSQGTLNRS 208

BLAST of Spg039941 vs. TAIR 10
Match: AT2G42180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 2.4e-09
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 0

Query: 28  SGYLQWLEER-----KLESETTTVTTTTEMNEIDKLAEMFIASCHEKFRLEKQESARRFQ 87
           S YLQWLEER      +  + +        ++ID+LA+ FIA CHEKF LEK ES RRFQ
Sbjct: 100 SQYLQWLEERVDENNNINDDQSVGERDVGDDDIDRLADKFIARCHEKFLLEKVESYRRFQ 159

Query: 88  EMMARSM 90
           +M+ARS+
Sbjct: 160 DMLARSL 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023548199.19.9e-3489.13uncharacterized protein LOC111806908 isoform X1 [Cucurbita pepo subsp. pepo] >XP... [more]
XP_022961611.11.3e-3390.11uncharacterized protein LOC111462262 [Cucurbita moschata] >KAG6602421.1 hypothet... [more]
KAG7033099.13.8e-3389.01hypothetical protein SDJN02_07152, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_008458796.12.4e-3283.87PREDICTED: uncharacterized protein LOC103498096 [Cucumis melo] >KAA0037558.1 DUF... [more]
XP_038890518.13.2e-3285.71uncharacterized protein LOC120080048 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HAU66.2e-3490.11uncharacterized protein LOC111462262 OS=Cucurbita moschata OX=3662 GN=LOC1114622... [more]
A0A5D3BVA71.2e-3283.87DUF761 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3C8P21.2e-3283.87uncharacterized protein LOC103498096 OS=Cucumis melo OX=3656 GN=LOC103498096 PE=... [more]
A0A0A0KP261.5e-3286.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523130 PE=4 SV=1[more]
A0A6J1JV227.6e-3286.81uncharacterized protein LOC111487754 OS=Cucurbita maxima OX=3661 GN=LOC111487754... [more]
Match NameE-valueIdentityDescription
AT3G57950.14.6e-1348.35unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G06790.11.8e-0943.82unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G42180.12.4e-0950.75unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008480Protein of unknown function DUF761, plantPFAMPF05553DUF761coord: 53..87
e-value: 1.8E-14
score: 52.9
NoneNo IPR availablePANTHERPTHR33450EMB|CAB67623.1-RELATEDcoord: 1..89
NoneNo IPR availablePANTHERPTHR33450:SF4DUF761 DOMAIN PROTEINcoord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg039941.1Spg039941.1mRNA