Spg039890 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg039890
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionF-box protein
Locationscaffold10: 45262849 .. 45263822 (+)
RNA-Seq ExpressionSpg039890
SyntenySpg039890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGCTGGAGATCAGTAAGAGGAGGAGGATTATGAAGGGCAATTGGGAGCTTCTGCCTCATATTCATCGGCTAATCTTCTCCAAACTCTCTATCTCCAATTTGCCTGTCTGCAGGCTTGTCTGTAAATCTTGGAATTGTCTAATTTTAGATTACGCTTCTTCTTCTTCTAAATTACTCCTTTCAAACATTCTCCTTTTCTCCAATTTCGTTCCTCCGAGACGTAGTCTACGTAATAGTCTTAGTCATAGTCTTAGTCGTTGGAAGACCAAGATCCATTGTCTCGACTTGAGTTTGACGACACTGATGGGTCAGACATCATCTACATCATCTTTCTCAACTCCTGCAACGGCCTGCTCTTTATTTCCAAACATTTCTCCTGTGACTATTGCAAAGATGTCTCCTCTTCGAAAGATTCCCCATGTGAGTGTTTCTATGATGATGGCATATTTAATCCAATGACTGGGGAATTCTTCAAACTTAATGGACCTGTATCAGAAGATGATAATTTCGTATTCGGATTTGGTTTCAGCCCTAAGACCAAGCAATACAAATTGTTCAAAGCAAACTGTCTAGAATCCAGTCTTACAATGGAGATTTTCACGATTGGTAGAGGTGGAACCAATCAAAATCAAAACCAATGGAGGTCCCTGCCTTTTGCCCTAACACTTTCCAGTAGTGGTACTTACTTCAATGGAGTGATGTATTGGATCGGAGCACAAAATGAAAATGAGTGTGCCATATATGGTCTTGATGTTGAAACTGAGAAGATTGAATCTATTGCGGTTTTGGAAGTTCGCTCTTTCCCCAAATGGGCGAGGATTCAGGCCTTGAATGACACCATTTATGCAATTATTCACGTGTACCCATTCGCACCAAAAATGGATAGAGAATTCCCACCAACTCATAAGATTCAAGTGTGGAGGATGCGGAGGAAAGATTTATGGGTCAAAAGATTTTGTTATTCATGA

mRNA sequence

ATGGAGAAGCTGGAGATCAGTAAGAGGAGGAGGATTATGAAGGGCAATTGGGAGCTTCTGCCTCATATTCATCGGCTAATCTTCTCCAAACTCTCTATCTCCAATTTGCCTGTCTGCAGGCTTTCGTTGGAAGACCAAGATCCATTGTCTCGACTTGAGTTTGACGACACTGATGGGTCAGACATCATCTACATCATCTTTCTCAACTCCTGCAACGGCCTGCTCTTTATTTCCAAACATTTCTCCTGTGACTATTGCAAAGATGTCTCCTCTTCGAAAGATTCCCCATGTGAGTGTTTCTATGATGATGGCATATTTAATCCAATGACTGGGGAATTCTTCAAACTTAATGGACCTGTATCAGAAGATGATAATTTCGTATTCGGATTTGGTTTCAGCCCTAAGACCAAGCAATACAAATTGTTCAAAGCAAACTGTCTAGAATCCAGTCTTACAATGGAGATTTTCACGATTGGTAGAGGTGGAACCAATCAAAATCAAAACCAATGGAGGTCCCTGCCTTTTGCCCTAACACTTTCCAGTAGTGGTACTTACTTCAATGGAGTGATGTATTGGATCGGAGCACAAAATGAAAATGAGTGTGCCATATATGGTCTTGATGTTGAAACTGAGAAGATTGAATCTATTGCGGTTTTGGAAGTTCGCTCTTTCCCCAAATGGGCGAGGATTCAGGCCTTGAATGACACCATTTATGCAATTATTCACGTGTACCCATTCGCACCAAAAATGGATAGAGAATTCCCACCAACTCATAAGATTCAAGTGTGGAGGATGCGGAGGAAAGATTTATGGGTCAAAAGATTTTGTTATTCATGA

Coding sequence (CDS)

ATGGAGAAGCTGGAGATCAGTAAGAGGAGGAGGATTATGAAGGGCAATTGGGAGCTTCTGCCTCATATTCATCGGCTAATCTTCTCCAAACTCTCTATCTCCAATTTGCCTGTCTGCAGGCTTTCGTTGGAAGACCAAGATCCATTGTCTCGACTTGAGTTTGACGACACTGATGGGTCAGACATCATCTACATCATCTTTCTCAACTCCTGCAACGGCCTGCTCTTTATTTCCAAACATTTCTCCTGTGACTATTGCAAAGATGTCTCCTCTTCGAAAGATTCCCCATGTGAGTGTTTCTATGATGATGGCATATTTAATCCAATGACTGGGGAATTCTTCAAACTTAATGGACCTGTATCAGAAGATGATAATTTCGTATTCGGATTTGGTTTCAGCCCTAAGACCAAGCAATACAAATTGTTCAAAGCAAACTGTCTAGAATCCAGTCTTACAATGGAGATTTTCACGATTGGTAGAGGTGGAACCAATCAAAATCAAAACCAATGGAGGTCCCTGCCTTTTGCCCTAACACTTTCCAGTAGTGGTACTTACTTCAATGGAGTGATGTATTGGATCGGAGCACAAAATGAAAATGAGTGTGCCATATATGGTCTTGATGTTGAAACTGAGAAGATTGAATCTATTGCGGTTTTGGAAGTTCGCTCTTTCCCCAAATGGGCGAGGATTCAGGCCTTGAATGACACCATTTATGCAATTATTCACGTGTACCCATTCGCACCAAAAATGGATAGAGAATTCCCACCAACTCATAAGATTCAAGTGTGGAGGATGCGGAGGAAAGATTTATGGGTCAAAAGATTTTGTTATTCATGA

Protein sequence

MEKLEISKRRRIMKGNWELLPHIHRLIFSKLSISNLPVCRLSLEDQDPLSRLEFDDTDGSDIIYIIFLNSCNGLLFISKHFSCDYCKDVSSSKDSPCECFYDDGIFNPMTGEFFKLNGPVSEDDNFVFGFGFSPKTKQYKLFKANCLESSLTMEIFTIGRGGTNQNQNQWRSLPFALTLSSSGTYFNGVMYWIGAQNENECAIYGLDVETEKIESIAVLEVRSFPKWARIQALNDTIYAIIHVYPFAPKMDREFPPTHKIQVWRMRRKDLWVKRFCYS
Homology
BLAST of Spg039890 vs. NCBI nr
Match: XP_008459707.1 (PREDICTED: F-box protein At3g07870-like [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 3.5e-37
Identity = 127/335 (37.91%), Postives = 160/335 (47.76%), Query Frame = 0

Query: 1   MEKLEISKRRRIMKGNWELLPHIHRLIFSKLSISNLPVCR-------------------- 60
           ME LE +K+R  M  N  L PHI R IFSKLSISNLP CR                    
Sbjct: 1   MEILE-TKKRIPMNINLRLPPHIVRAIFSKLSISNLPTCRVVCKTWNNLVLEYASSTKFL 60

Query: 61  ------LSLEDQ--------------------DPLSRLEFDDTDG--SDIIYIIFLNSCN 120
                 LS+ D+                    D  S+  +  + G   D  YI  +NSCN
Sbjct: 61  PTTTLFLSMADEISNYIPFKSTPWCNPKIHCVDIDSKTSYVASFGFEGDWSYITIVNSCN 120

Query: 121 GLLFISKHFSCDYCKDVSSSKDSPCECFYDDGIFNPMTGEFFKLNGPVSEDDNFVFGFGF 180
           GLL+I K            + DS CE     GI NPMT EF ++  P  E D    GFGF
Sbjct: 121 GLLYICKF-----------TFDSLCE-----GILNPMTNEFMEIPQPEIELDVHSIGFGF 180

Query: 181 SPKTKQYKLFKA------NCLESSLTMEIFTIGRGGTNQNQNQWR---SLPFALTLSSSG 240
           SP+TKQYKLF+       N  +    MEIFT   G       QWR    LPF   +   G
Sbjct: 181 SPRTKQYKLFRTEPEVLENLKKCHYIMEIFTFDNG-----YKQWRHFERLPF--VVFHHG 240

Query: 241 TYFNGVMYWIG--AQNENECAIYGLDVETEKIESIAVLEVRSFPKWARIQALNDTIYAII 276
            Y NGV+YWIG   + E E  IY LDV+TE++E  A LE+    K   I+   + +YAII
Sbjct: 241 QYLNGVIYWIGKKLEKEGEAVIYALDVDTEQMECTATLEIGPSLKNGSIKIFEERVYAII 300

BLAST of Spg039890 vs. NCBI nr
Match: XP_038879760.1 (uncharacterized protein LOC120071509 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 1.1e-35
Identity = 110/292 (37.67%), Postives = 153/292 (52.40%), Query Frame = 0

Query: 4   LEISKRRRIMKGNWELLPHIHRLIFSKLSISNLPVCRLSLEDQDPLSRLEFDDT------ 63
           L+ S   +++  ++ L       I    S+ N  +    L+D D  S +EF+        
Sbjct: 42  LDYSSSSKLLTNDFILFTRDGNPICGSSSLYNPKMHCFRLDDLDVDSDMEFEVNKFASLR 101

Query: 64  -DGSDIIYIIFLNSCNGLLFISKHFSCDYCKDVSSSKDSPCECFYDDGIFNPMTGEFFKL 123
            DG D  +I+ + SCNGLL ISK  S  Y           C C    GIFNPMT EFF++
Sbjct: 102 FDG-DWSFILPIRSCNGLLLISK--STFY-----------CSCM---GIFNPMTNEFFRV 161

Query: 124 NGPVSEDDNFVFGFGFSPKTKQYKLFKANCLES---SLTMEIFTIGRGGTN----QNQNQ 183
                + + +V+GFGF P TK YKLF+    +    S  ME+ T GRGG N    Q+QNQ
Sbjct: 162 PRDNFDANKYVYGFGFIPTTKHYKLFRITIEDEPSYSSRMEVLTFGRGGINPNPKQSQNQ 221

Query: 184 WRSL-PFALTLSSSGTYFNGVMYWIGAQ--NENECAIYGLDVETEKIESIAVLEVRSFPK 243
           WR L      +   G YFNG++YW+G +   +NE  IY LDVE+EKI+  AVL+V  F  
Sbjct: 222 WRHLYSIPSDICCKGAYFNGIIYWLGREKDEQNEYVIYTLDVESEKIKLSAVLKVGPFSH 281

Query: 244 WAR--IQALNDTIYAIIHVYPFAPKMDREFPPTH-KIQVWRMRRKDLWVKRF 276
           + +  IQ  N ++YAI H+ P         P T+ +IQVW+M  KD W++ F
Sbjct: 282 YNKVYIQQFNGSVYAIFHILP---------PTTNERIQVWKMEEKDSWIRDF 307

BLAST of Spg039890 vs. NCBI nr
Match: XP_038890298.1 (F-box protein At3g07870-like [Benincasa hispida])

HSP 1 Score: 156.4 bits (394), Expect = 3.6e-34
Identity = 94/225 (41.78%), Postives = 122/225 (54.22%), Query Frame = 0

Query: 64  YIIFLNSCNGLLFISKHFSCDYCKDVSSSKDSPCECFYDDGIFNPMTGEFFKLNGPVSED 123
           ++  +N C+GLL I K  +   C                DGIFNPMT EF ++     ++
Sbjct: 108 FMAIMNYCSGLLLICKCANYTRC----------------DGIFNPMTNEFLQVPRGQLDN 167

Query: 124 DNFVFGFGFSPKTKQYKLFKA------NC-LESSLTMEIFTIGRGGTNQNQNQWRSLPF- 183
           D + FGFGF+  TKQYKLF+       NC  ES   M++ T  R GTN N NQWR L + 
Sbjct: 168 DIYYFGFGFTTTTKQYKLFRVCDSFSRNCEFESGSIMDVLTFSRSGTNANHNQWRYLHYL 227

Query: 184 ALTLSSSGTYFNGVMYWIG--AQNENECAIYGLDVETEKIESIAVLEV---RSFPKWARI 243
            L + S+G Y NG +YWIG   + ENE AIY LDVETEKIE   VLE+       K   +
Sbjct: 228 PLDIHSNGAYLNGFIYWIGKEEEKENEYAIYVLDVETEKIELSIVLEICPPLCTSKVGGM 287

Query: 244 QALNDTIYAIIHVYPFAPKMDREFPPTHKIQVWRMRRKDLWVKRF 276
           Q  ND++YAI  +           P  + IQVWRM+ KDLW++ F
Sbjct: 288 QQFNDSVYAIFLI---------NQPTGNSIQVWRMQEKDLWIREF 307

BLAST of Spg039890 vs. NCBI nr
Match: KAA0039382.1 (F-box protein [Cucumis melo var. makuwa] >TYK00570.1 F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 2.4e-33
Identity = 102/259 (39.38%), Postives = 133/259 (51.35%), Query Frame = 0

Query: 31  LSISNLPVCRLSLEDQDPLSRLEFDDTDG--SDIIYIIFLNSCNGLLFISKHFSCDYCKD 90
           +   + P C   +   D  S+  +  + G   D  YI  +NSCNGLL+I K         
Sbjct: 9   IPFKSTPWCNPKIHCVDIDSKTSYVASFGFEGDWSYITIVNSCNGLLYICKF-------- 68

Query: 91  VSSSKDSPCECFYDDGIFNPMTGEFFKLNGPVSEDDNFVFGFGFSPKTKQYKLFKA---- 150
              + DS CE     GI NPMT EF ++  P  E D    GFGFSP+TKQYKLF+     
Sbjct: 69  ---TFDSLCE-----GILNPMTNEFMEIPQPEIELDVHSIGFGFSPRTKQYKLFRTEPEV 128

Query: 151 --NCLESSLTMEIFTIGRGGTNQNQNQWR---SLPFALTLSSSGTYFNGVMYWIG--AQN 210
             N  +    MEIFT   G       QWR    LPF   +   G Y NGV+YWIG   + 
Sbjct: 129 LENLKKCHYIMEIFTFDNG-----YKQWRHFERLPF--VVFHHGQYLNGVIYWIGKKLEK 188

Query: 211 ENECAIYGLDVETEKIESIAVLEVRSFPKWARIQALNDTIYAIIHVYPFAPKMDREFPPT 270
           E E  IY LDV+TE++E IA LE+  F K   I+   + +YAII +      MD+   PT
Sbjct: 189 EGEAVIYALDVDTEQMECIATLEIGPFLKNGSIKIFEERVYAIISL------MDKRVSPT 238

Query: 271 -HKIQVWRMRRKDLWVKRF 276
            +KI++WRM+ KD W+K F
Sbjct: 249 SYKIELWRMQTKDSWIKEF 238

BLAST of Spg039890 vs. NCBI nr
Match: KAA0039746.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 3.4e-32
Identity = 102/270 (37.78%), Postives = 136/270 (50.37%), Query Frame = 0

Query: 15  GNWELLPHIHRLIFSKLSISNLPV-CRLSLEDQDPLSRLEFDDTDGSDIIYIIFL-NSCN 74
           GN +L P ++ + F      +L +   L LE   P S L FD     D  +I  + NSCN
Sbjct: 74  GNKDLNPKMYCIHFDTTKHLDLDLDFDLELEWTKPPS-LSFD----GDWSFIPMMDNSCN 133

Query: 75  GLLFISKHFSCDYCKDVSSSKDSPCECFYDDGIFNPMTGEFFKLNGPVSEDDNFVFGFGF 134
           GL+FI K                 C  F+ DGIFNPMT EF ++     + DN+ +G GF
Sbjct: 134 GLVFIRK-----------------C-AFFSDGIFNPMTNEFLQVPRHELDGDNYFYGLGF 193

Query: 135 SPKTKQYKLFKANCLESSLTMEIFTIGRGGTNQNQNQWRSL-PFALTLSSSGTYFNGVMY 194
           SP TKQYK+F+ N   +S  M I T  R  TN   NQWR L    + +   G Y NG +Y
Sbjct: 194 SPTTKQYKMFRVNPNNNSSIMYILTFRRSETNYKYNQWRQLHSLPILICCDGVYLNGFIY 253

Query: 195 WIGAQ--NENECAIYGLDVETEKIESIAVLEVRSFP----KWARIQALNDTIYAIIHVYP 254
           W+G +   ENE  IY L+VETE+IE  AVL +  F         ++  N ++YA  ++ P
Sbjct: 254 WMGRKQYKENEYTIYALNVETEQIELSAVLHLGPFSTSSIPGVSLKQFNGSVYATFYIDP 312

Query: 255 FAPKMDREFPPTHKIQVWRMRRKDLWVKRF 276
                         IQVWRM+ KDLW+K F
Sbjct: 314 KT--------CNSVIQVWRMQEKDLWIKEF 312

BLAST of Spg039890 vs. ExPASy TrEMBL
Match: A0A1S3CB99 (F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.7e-37
Identity = 127/335 (37.91%), Postives = 160/335 (47.76%), Query Frame = 0

Query: 1   MEKLEISKRRRIMKGNWELLPHIHRLIFSKLSISNLPVCR-------------------- 60
           ME LE +K+R  M  N  L PHI R IFSKLSISNLP CR                    
Sbjct: 1   MEILE-TKKRIPMNINLRLPPHIVRAIFSKLSISNLPTCRVVCKTWNNLVLEYASSTKFL 60

Query: 61  ------LSLEDQ--------------------DPLSRLEFDDTDG--SDIIYIIFLNSCN 120
                 LS+ D+                    D  S+  +  + G   D  YI  +NSCN
Sbjct: 61  PTTTLFLSMADEISNYIPFKSTPWCNPKIHCVDIDSKTSYVASFGFEGDWSYITIVNSCN 120

Query: 121 GLLFISKHFSCDYCKDVSSSKDSPCECFYDDGIFNPMTGEFFKLNGPVSEDDNFVFGFGF 180
           GLL+I K            + DS CE     GI NPMT EF ++  P  E D    GFGF
Sbjct: 121 GLLYICKF-----------TFDSLCE-----GILNPMTNEFMEIPQPEIELDVHSIGFGF 180

Query: 181 SPKTKQYKLFKA------NCLESSLTMEIFTIGRGGTNQNQNQWR---SLPFALTLSSSG 240
           SP+TKQYKLF+       N  +    MEIFT   G       QWR    LPF   +   G
Sbjct: 181 SPRTKQYKLFRTEPEVLENLKKCHYIMEIFTFDNG-----YKQWRHFERLPF--VVFHHG 240

Query: 241 TYFNGVMYWIG--AQNENECAIYGLDVETEKIESIAVLEVRSFPKWARIQALNDTIYAII 276
            Y NGV+YWIG   + E E  IY LDV+TE++E  A LE+    K   I+   + +YAII
Sbjct: 241 QYLNGVIYWIGKKLEKEGEAVIYALDVDTEQMECTATLEIGPSLKNGSIKIFEERVYAII 300

BLAST of Spg039890 vs. ExPASy TrEMBL
Match: A0A0A0LWG1 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 9.4e-36
Identity = 117/353 (33.14%), Postives = 164/353 (46.46%), Query Frame = 0

Query: 1   MEKLEISKRRRIMKGNWELLPHIHRLIFSKLSISNLPVCRL------------------- 60
           +E +EIS+RR  +     L P I + IFSKL IS+LP CRL                   
Sbjct: 8   IENMEISERRMTINCGKGLPPLIAKTIFSKLVISDLPSCRLVSNTWNDLVLDYASSTQLQ 67

Query: 61  ---------------------------SLEDQDPLSRLEFD-----------DTDGSDII 120
                                      +L+ +   +  +FD             DG    
Sbjct: 68  FLKNAFLLSTSDRGLNYKLCNPKMHCINLDTRQLSNDFDFDLESEFIKSASLQFDGDWTY 127

Query: 121 YIIFLNSCNGLLFISKHFSCDYCKDVSSSKDSPCECFYDDGIFNPMTGEFFKLNGPVSED 180
            II   SCNGL+ ISK     +C+                GIFNPMT EF +++   + D
Sbjct: 128 TIIMAGSCNGLMLISKCSDYTWCQ----------------GIFNPMTNEFLQVSEHGTFD 187

Query: 181 DNFVFGFGFSPKTKQYKLFK-----------ANCLESSLTMEIFTIGRGGTNQN---QNQ 240
           D +++GFGFSP TKQYKLF+           ++ +++  TME+ T GR GTN +    NQ
Sbjct: 188 DFYLYGFGFSPITKQYKLFRVFDKGFRCRRTSSTVDTHYTMEVLTFGRSGTNHSIPIHNQ 247

Query: 241 WR---SLPFALTLSSSGTYFNGVMYWI----GAQNENECAIYGLDVETEKIESIAVLEVR 276
           WR   +LPF +   + G Y NG++YW+    G   E +  IY LDVETE IE   VL+V 
Sbjct: 248 WRRLHTLPFEIV--ADGVYLNGIIYWLVKEKGKDKEKKYVIYALDVETEHIEMTVVLQVP 307

BLAST of Spg039890 vs. ExPASy TrEMBL
Match: A0A5A7T7C6 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001850 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-33
Identity = 102/259 (39.38%), Postives = 133/259 (51.35%), Query Frame = 0

Query: 31  LSISNLPVCRLSLEDQDPLSRLEFDDTDG--SDIIYIIFLNSCNGLLFISKHFSCDYCKD 90
           +   + P C   +   D  S+  +  + G   D  YI  +NSCNGLL+I K         
Sbjct: 9   IPFKSTPWCNPKIHCVDIDSKTSYVASFGFEGDWSYITIVNSCNGLLYICKF-------- 68

Query: 91  VSSSKDSPCECFYDDGIFNPMTGEFFKLNGPVSEDDNFVFGFGFSPKTKQYKLFKA---- 150
              + DS CE     GI NPMT EF ++  P  E D    GFGFSP+TKQYKLF+     
Sbjct: 69  ---TFDSLCE-----GILNPMTNEFMEIPQPEIELDVHSIGFGFSPRTKQYKLFRTEPEV 128

Query: 151 --NCLESSLTMEIFTIGRGGTNQNQNQWR---SLPFALTLSSSGTYFNGVMYWIG--AQN 210
             N  +    MEIFT   G       QWR    LPF   +   G Y NGV+YWIG   + 
Sbjct: 129 LENLKKCHYIMEIFTFDNG-----YKQWRHFERLPF--VVFHHGQYLNGVIYWIGKKLEK 188

Query: 211 ENECAIYGLDVETEKIESIAVLEVRSFPKWARIQALNDTIYAIIHVYPFAPKMDREFPPT 270
           E E  IY LDV+TE++E IA LE+  F K   I+   + +YAII +      MD+   PT
Sbjct: 189 EGEAVIYALDVDTEQMECIATLEIGPFLKNGSIKIFEERVYAIISL------MDKRVSPT 238

Query: 271 -HKIQVWRMRRKDLWVKRF 276
            +KI++WRM+ KD W+K F
Sbjct: 249 SYKIELWRMQTKDSWIKEF 238

BLAST of Spg039890 vs. ExPASy TrEMBL
Match: A0A5A7TCF3 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-32
Identity = 102/270 (37.78%), Postives = 136/270 (50.37%), Query Frame = 0

Query: 15  GNWELLPHIHRLIFSKLSISNLPV-CRLSLEDQDPLSRLEFDDTDGSDIIYIIFL-NSCN 74
           GN +L P ++ + F      +L +   L LE   P S L FD     D  +I  + NSCN
Sbjct: 74  GNKDLNPKMYCIHFDTTKHLDLDLDFDLELEWTKPPS-LSFD----GDWSFIPMMDNSCN 133

Query: 75  GLLFISKHFSCDYCKDVSSSKDSPCECFYDDGIFNPMTGEFFKLNGPVSEDDNFVFGFGF 134
           GL+FI K                 C  F+ DGIFNPMT EF ++     + DN+ +G GF
Sbjct: 134 GLVFIRK-----------------C-AFFSDGIFNPMTNEFLQVPRHELDGDNYFYGLGF 193

Query: 135 SPKTKQYKLFKANCLESSLTMEIFTIGRGGTNQNQNQWRSL-PFALTLSSSGTYFNGVMY 194
           SP TKQYK+F+ N   +S  M I T  R  TN   NQWR L    + +   G Y NG +Y
Sbjct: 194 SPTTKQYKMFRVNPNNNSSIMYILTFRRSETNYKYNQWRQLHSLPILICCDGVYLNGFIY 253

Query: 195 WIGAQ--NENECAIYGLDVETEKIESIAVLEVRSFP----KWARIQALNDTIYAIIHVYP 254
           W+G +   ENE  IY L+VETE+IE  AVL +  F         ++  N ++YA  ++ P
Sbjct: 254 WMGRKQYKENEYTIYALNVETEQIELSAVLHLGPFSTSSIPGVSLKQFNGSVYATFYIDP 312

Query: 255 FAPKMDREFPPTHKIQVWRMRRKDLWVKRF 276
                         IQVWRM+ KDLW+K F
Sbjct: 314 KT--------CNSVIQVWRMQEKDLWIKEF 312

BLAST of Spg039890 vs. ExPASy TrEMBL
Match: A0A5D3DMB7 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003140 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.8e-32
Identity = 103/270 (38.15%), Postives = 136/270 (50.37%), Query Frame = 0

Query: 15  GNWELLPHIHRLIFSKLSISNLPV-CRLSLEDQDPLSRLEFDDTDGSDIIYIIFL-NSCN 74
           GN +L P ++ + F      +L +   L LE   P S L FD     D  +I  + NSCN
Sbjct: 77  GNKDLNPKMYCIHFDTTKHLDLDLDFDLELEWTKPPS-LSFD----GDWSFIPMMDNSCN 136

Query: 75  GLLFISKHFSCDYCKDVSSSKDSPCECFYDDGIFNPMTGEFFKLNGPVSEDDNFVFGFGF 134
           GL+FI K      C   S S          DGIFNPMT EF ++     + DN+ +G GF
Sbjct: 137 GLVFIRK------CAFFSRS----------DGIFNPMTNEFLQVPRHELDGDNYFYGLGF 196

Query: 135 SPKTKQYKLFKANCLESSLTMEIFTIGRGGTNQNQNQWRSL-PFALTLSSSGTYFNGVMY 194
           SP TKQYK+F+ N   +S  M I T  R  TN   NQWR L    + +   G Y NG +Y
Sbjct: 197 SPTTKQYKMFRVNPNNNSSIMYILTFRRSETNYKYNQWRQLHSLPILICCDGVYLNGFIY 256

Query: 195 WIGAQ--NENECAIYGLDVETEKIESIAVLEVRSFP----KWARIQALNDTIYAIIHVYP 254
           W+G +   ENE  IY L+VETE+IE  AVL +  F         ++  N ++YA  ++ P
Sbjct: 257 WMGRKQYKENEYTIYALNVETEQIELSAVLHLGPFSTSSIPGVSLKQFNGSVYATFYIDP 316

Query: 255 FAPKMDREFPPTHKIQVWRMRRKDLWVKRF 276
                         IQVWRM+ KDLW+K F
Sbjct: 317 KT--------CNSVIQVWRMQEKDLWIKEF 317

BLAST of Spg039890 vs. TAIR 10
Match: AT3G07870.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 43.5 bits (101), Expect = 3.2e-04
Identity = 43/176 (24.43%), Postives = 71/176 (40.34%), Query Frame = 0

Query: 68  LNSCNGLLFISKHFSCDYCKDVSSSKDSPCECFYDDG--IFNPMTGEFFKLNGPVSE--D 127
           + SCNGLL +S                   +  Y+D   ++NP T    +L    ++  D
Sbjct: 120 VGSCNGLLCLS-------------------DSLYNDSLYLYNPFTTNSLELPECSNKYHD 179

Query: 128 DNFVFGFGFSPKTKQYKLFKANCLESSLT------------------MEIFTIGRGGTNQ 187
              VFGFGF   TK+YK+ K      S +                  ++I T+    T+Q
Sbjct: 180 QELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQ 239

Query: 188 NQNQWRSL---PFALTLSSSGTYFNGVMYWIGAQNEN--ECAIYGLDVETEKIESI 217
           + + WRSL   P+     SS    NG ++++     +  +      D+E E+ + I
Sbjct: 240 SLS-WRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEI 275

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008459707.13.5e-3737.91PREDICTED: F-box protein At3g07870-like [Cucumis melo][more]
XP_038879760.11.1e-3537.67uncharacterized protein LOC120071509 [Benincasa hispida][more]
XP_038890298.13.6e-3441.78F-box protein At3g07870-like [Benincasa hispida][more]
KAA0039382.12.4e-3339.38F-box protein [Cucumis melo var. makuwa] >TYK00570.1 F-box protein [Cucumis melo... [more]
KAA0039746.13.4e-3237.78F-box protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3CB991.7e-3737.91F-box protein At3g07870-like OS=Cucumis melo OX=3656 GN=LOC103498749 PE=4 SV=1[more]
A0A0A0LWG19.4e-3633.14F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G257290 PE=4 ... [more]
A0A5A7T7C61.1e-3339.38F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001850... [more]
A0A5A7TCF31.7e-3237.78F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G00060 ... [more]
A0A5D3DMB74.8e-3238.15F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003140... [more]
Match NameE-valueIdentityDescription
AT3G07870.13.2e-0424.43F-box and associated interaction domains-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017451F-box associated interaction domainTIGRFAMTIGR01640TIGR01640coord: 105..222
e-value: 1.1E-13
score: 49.1
NoneNo IPR availablePANTHERPTHR47993OS09G0372900 PROTEIN-RELATEDcoord: 20..275
NoneNo IPR availablePANTHERPTHR47993:SF20F-BOX FAMILY PROTEINcoord: 20..275

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg039890.1Spg039890.1mRNA