Spg039875 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg039875
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold10: 45560956 .. 45561210 (-)
RNA-Seq ExpressionSpg039875
SyntenySpg039875
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGCTCTTCAAAGTCACAAAATTGTTCTTCGTTCTTGCTCTCATTCTTTTCCTCTCTGTTTCTTCTTCTTCGGCCAGACTGTTGCGCGATCCATCTCTTTCCGCCGTGCCGGAGTTGAAACTTGATATTCCGGCGGATCCGGGGGCGGCCCTGTCGAGGGAGTATGGGGCTCTGCTTTTGGGGTTTCTGCCGAAAGGGGGAATTCCGTCGTCGGGGCCGAGCAAAGGGACCAACGACTTCAACAGTTAG

mRNA sequence

ATGGCGAAGCTCTTCAAAGTCACAAAATTGTTCTTCGTTCTTGCTCTCATTCTTTTCCTCTCTGTTTCTTCTTCTTCGGCCAGACTGTTGCGCGATCCATCTCTTTCCGCCGTGCCGGAGTTGAAACTTGATATTCCGGCGGATCCGGGGGCGGCCCTGTCGAGGGAGTATGGGGCTCTGCTTTTGGGGTTTCTGCCGAAAGGGGGAATTCCGTCGTCGGGGCCGAGCAAAGGGACCAACGACTTCAACAGTTAG

Coding sequence (CDS)

ATGGCGAAGCTCTTCAAAGTCACAAAATTGTTCTTCGTTCTTGCTCTCATTCTTTTCCTCTCTGTTTCTTCTTCTTCGGCCAGACTGTTGCGCGATCCATCTCTTTCCGCCGTGCCGGAGTTGAAACTTGATATTCCGGCGGATCCGGGGGCGGCCCTGTCGAGGGAGTATGGGGCTCTGCTTTTGGGGTTTCTGCCGAAAGGGGGAATTCCGTCGTCGGGGCCGAGCAAAGGGACCAACGACTTCAACAGTTAG

Protein sequence

MAKLFKVTKLFFVLALILFLSVSSSSARLLRDPSLSAVPELKLDIPADPGAALSREYGALLLGFLPKGGIPSSGPSKGTNDFNS
Homology
BLAST of Spg039875 vs. NCBI nr
Match: KAG6578478.1 (hypothetical protein SDJN03_22926, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.6 bits (296), Expect = 2.5e-23
Identity = 69/85 (81.18%), Postives = 73/85 (85.88%), Query Frame = 0

Query: 1  MAKLFKVTKLFFVLALILFLSVSSSSARLLRDPSLS-AVPELKLDIPADPGAALSREYGA 60
          MAKLFKV KLFFV A+ILF+S SSSSARLLRD SLS AVPELKLDIP    AALSREYG 
Sbjct: 1  MAKLFKVPKLFFVFAVILFISASSSSARLLRDQSLSAAVPELKLDIP----AALSREYGP 60

Query: 61 LLLGFLPKGGIPSSGPSKGTNDFNS 85
          L+LGFLPKG IP SGPSKGTNDFN+
Sbjct: 61 LILGFLPKGRIPPSGPSKGTNDFNT 81

BLAST of Spg039875 vs. NCBI nr
Match: KAG6602588.1 (hypothetical protein SDJN03_07821, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-19
Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 0

Query: 1  MAKLFKVTKLFFVLALILFLSV-SSSSARLLRDPSLS--AVPELKLDIPADPGAALSREY 60
          MA LFK++K   VLALIL LSV SSSSARLLRD SLS  A+P+LKLD PAD   AL+ EY
Sbjct: 1  MANLFKLSKFISVLALILSLSVSSSSSARLLRDLSLSPAALPDLKLDTPADHTTALAVEY 60

Query: 61 GALLLGFLPKGGIPSSGPSKGTNDFNS 85
          GALLLGFLPKGGIP SGPSKGTN+ NS
Sbjct: 61 GALLLGFLPKGGIPPSGPSKGTNNLNS 87

BLAST of Spg039875 vs. NCBI nr
Match: KGN45830.1 (hypothetical protein Csa_005505 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 7.9e-17
Identity = 61/86 (70.93%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MAKLFKVTKLFFVL-ALILFLSVSSSSARLLRDPSLSAVPELKLDIPADPGAALSREYGA 60
          MA LFK   LFF L  LIL +SVSSSSARLLR  SLS  P LKLDIPADP A    EY +
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLS--PALKLDIPADPAAPTMTEYES 60

Query: 61 LLLGFLPKGG-IPSSGPSKGTNDFNS 85
          LLLGFLPKGG IP SGPSKGTN+FN+
Sbjct: 61 LLLGFLPKGGSIPPSGPSKGTNNFNT 84

BLAST of Spg039875 vs. NCBI nr
Match: RHN69815.1 (hypothetical protein MtrunA17_Chr3g0128861 [Medicago truncatula])

HSP 1 Score: 53.9 bits (128), Expect = 7.7e-04
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 0

Query: 6  KVTKLFFVLALILFLSV--SSSSARLLRD------------PSLSAVPELK---LDIPAD 65
          K   L   +AL++ LS+  SSSSAR L D            PS  A+PE K   + +  +
Sbjct: 6  KKQNLQLAVALLILLSLISSSSSARPLNDFSQLAETSNIALPSERAMPEEKEGHISVVRE 65

Query: 66 PGAALSREYGALLLGFLPKGGIPSSGPSKGTNDFNS 85
           G A  + YG L+L  LPKG +PSSGPSKGTN+ N+
Sbjct: 66 RGGA--KSYGPLILNMLPKGKVPSSGPSKGTNNLNN 99

BLAST of Spg039875 vs. NCBI nr
Match: KEH35558.1 (hypothetical protein MTR_3g094130 [Medicago truncatula])

HSP 1 Score: 53.9 bits (128), Expect = 7.7e-04
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 0

Query: 6  KVTKLFFVLALILFLSV--SSSSARLLRD------------PSLSAVPELK---LDIPAD 65
          K   L   +AL++ LS+  SSSSAR L D            PS  A+PE K   + +  +
Sbjct: 4  KKQNLQLAVALLILLSLISSSSSARPLNDFSQLAETSNIALPSERAMPEEKEGHISVVRE 63

Query: 66 PGAALSREYGALLLGFLPKGGIPSSGPSKGTNDFNS 85
           G A  + YG L+L  LPKG +PSSGPSKGTN+ N+
Sbjct: 64 RGGA--KSYGPLILNMLPKGKVPSSGPSKGTNNLNN 97

BLAST of Spg039875 vs. ExPASy TrEMBL
Match: A0A0A0K7U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014510 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.8e-17
Identity = 61/86 (70.93%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MAKLFKVTKLFFVL-ALILFLSVSSSSARLLRDPSLSAVPELKLDIPADPGAALSREYGA 60
          MA LFK   LFF L  LIL +SVSSSSARLLR  SLS  P LKLDIPADP A    EY +
Sbjct: 1  MANLFKKLPLFFFLFTLILLISVSSSSARLLRQQSLS--PALKLDIPADPAAPTMTEYES 60

Query: 61 LLLGFLPKGG-IPSSGPSKGTNDFNS 85
          LLLGFLPKGG IP SGPSKGTN+FN+
Sbjct: 61 LLLGFLPKGGSIPPSGPSKGTNNFNT 84

BLAST of Spg039875 vs. ExPASy TrEMBL
Match: A0A072V2H1 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_3g094130 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 0

Query: 6  KVTKLFFVLALILFLSV--SSSSARLLRD------------PSLSAVPELK---LDIPAD 65
          K   L   +AL++ LS+  SSSSAR L D            PS  A+PE K   + +  +
Sbjct: 4  KKQNLQLAVALLILLSLISSSSSARPLNDFSQLAETSNIALPSERAMPEEKEGHISVVRE 63

Query: 66 PGAALSREYGALLLGFLPKGGIPSSGPSKGTNDFNS 85
           G A  + YG L+L  LPKG +PSSGPSKGTN+ N+
Sbjct: 64 RGGA--KSYGPLILNMLPKGKVPSSGPSKGTNNLNN 97

BLAST of Spg039875 vs. ExPASy TrEMBL
Match: A0A396J0C5 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr3g0128861 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.7e-04
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 0

Query: 6  KVTKLFFVLALILFLSV--SSSSARLLRD------------PSLSAVPELK---LDIPAD 65
          K   L   +AL++ LS+  SSSSAR L D            PS  A+PE K   + +  +
Sbjct: 6  KKQNLQLAVALLILLSLISSSSSARPLNDFSQLAETSNIALPSERAMPEEKEGHISVVRE 65

Query: 66 PGAALSREYGALLLGFLPKGGIPSSGPSKGTNDFNS 85
           G A  + YG L+L  LPKG +PSSGPSKGTN+ N+
Sbjct: 66 RGGA--KSYGPLILNMLPKGKVPSSGPSKGTNNLNN 99

BLAST of Spg039875 vs. ExPASy TrEMBL
Match: A0A7J0GW62 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_24g0012850 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.3e-04
Identity = 39/87 (44.83%), Postives = 48/87 (55.17%), Query Frame = 0

Query: 6  KVTKLFFVLALILFLSVS-SSSARLLRD---PSLSAVPELKLD----IPADPGAALSREY 65
          K + L     L +FL +S SSSARLL+D   P     P +  D      A+P    SR Y
Sbjct: 3  KPSMLCLTATLFIFLIISQSSSARLLKDSSHPCKMGQPTMSFDPMELAVAEPKRLRSR-Y 62

Query: 66 GALLLGFLPKGGIPSSGPSKGTNDFNS 85
          G L L  LPKG +P SGPSKGTN+ N+
Sbjct: 63 GPLFLSMLPKGSVPPSGPSKGTNNMNN 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6578478.12.5e-2381.18hypothetical protein SDJN03_22926, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602588.11.7e-1974.71hypothetical protein SDJN03_07821, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN45830.17.9e-1770.93hypothetical protein Csa_005505 [Cucumis sativus][more]
RHN69815.17.7e-0442.71hypothetical protein MtrunA17_Chr3g0128861 [Medicago truncatula][more]
KEH35558.17.7e-0442.71hypothetical protein MTR_3g094130 [Medicago truncatula][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7U23.8e-1770.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014510 PE=4 SV=1[more]
A0A072V2H13.7e-0442.71Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_3g094130 PE=4 SV=1[more]
A0A396J0C53.7e-0442.71Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr3g0128861 ... [more]
A0A7J0GW628.3e-0444.83Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_24g0012850 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg039875.1Spg039875.1mRNA