Spg039857 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg039857
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S23
Location	scaffold10: 42229875 .. 42231881 (+)
RNA-Seq Expression	Spg039857
Synteny	Spg039857

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATAATAATGAAGCTAGAGAGTAATACAATAATAAAATAATAATAATAAATAATTAATTAATGAGACTTGAGTGATATGCTAGCAATGGCCAGTCTTGAATCCCGAAGGGTAATCTCGTAATCGTGCAGTCGAAGCTTCACCATTCGGCATTCACCAGGAGGCCAAGGCGGTATATATACATCATCCGTTCAAAGTTCCATTGCCATTCAGTCAGTCCACACACTCGGCATTCTTGTTTGGGCGTTTCTTGAGGAAGTTGCAGCGCTTTCTTAATCCGCCATCGTCTGGTACGCATTCCTCTCTTCTCTACTTCGTCTTCATCCAATTATATTTTCTCGAAGAAGTTGCAATACATTCATGAACGAATTGCATTCGTTTTGTCTGTTCTTTGATTGCGTTCTAGGAGCCTCATTTGTTTTTGATGTGTTCATATCGTTTGTTGAACCTTTATGAACGAAAAAAATGAAGCGGAGCTACTTTGAACAACTTCGAAGGCGTTATTTCATTCGGATCTTTGATTTCATGCTTGCTGCTTGTTAGGATGTAAAACTGGAAATTGTACGCCAGGAGAAACGATGTTTCGATTCTGATGACTATTTTTTTGATACTCAAAAATCAGATCGAGGCACTAGGTTGAATATTTCTCGTCTAGCAGAATGTCTCGGTTTTAAAACCTGTACTGATACGTTCTAATTGTTTTACTGATCAATCGATAGGTCTTGAGTTGTGGATAATCTGTTTTTCCGACTATAATTCTACTCTTTCTCGCTCTGCTTGTCCATATAATTGATAGAATATATTCCGATGATATGAGTGGAATCACCTTGCTGAAACTTAGATATTATTGTTGACGCTTTCTCTCTGTCTGCTTGTCCATGTGGTTATAAGAATTTTATTCATATGATATCGGTGGAAACGGCTCTCCTAAACTCGTAAACTCAGCCTGAATACTGTTGTTGATAGCTTCATCCCTCCTTCTTCACTTGTCTATCTGATAATATAAGTGGAAACGACTTTTAGAAATTCAGAACTCATATACTATGCTTGGATATGTTTGTTTACAACTTCTATACGTAATTTCATGGGAGAATAGTTGAGCCTAGATTCCTCATCCTCGTGAATTTCATATTCATGTCCTTAATCTCAATATGTAGATACCATGGTTCTTCTTAACATGGATATGTTTGCCTTTCTTTGTCTCTATCCGATTATCTGCATGGTTAAGGAGTATATTCTGATAATGCGAGTGGAAATACCTTTCAGAACTCATATTACTAAGCTTGGATAATGGATATTATTGTTTGACAGTTTCTATATGTAGTTTTGTTGGAGGAGACTTATACATAGATCCTCATCCTCATTGAATTTCTTCATCTTACTATGTAGATTGCATTATTCTTCTTCACATGTGGGAGAAGTCTTTAGCTCCGTTAAAATTCTTGAAGGATGCATTCTTAGAAAAACTAATTTACTCTTACTGTGTTCTTTAATCGTAGTTTATTTTTTCTATTCCGAATATTTCCCAAATCCTGCTATGGTAATGAACGATTATTTGTTTCATATGTGCAGCCTTCTAGTTGGCATGATCATATAATTTTACTTTTATTTATTTCGTTTGCATATCATGTAAATGTGCACGGAATGGGAGCTGGTCGTAAATTGATGCCCCACCGTTGAAGGGGCAGAGGTGGGCAGATAAGGCGTATAAGAAATCTGATCTTGGTAATGAGCGGAAAAAGGCCCGTTGCAGTATCATCTCATGCAAAAGCGATTGTGCTAGAAAAGATAAGTTATTGGTACTTATGCTAATGGTGATGAATTATTAATATTTACTAGTCTTGTGACAAAGTTGACTTTGCCAATGCAGAGGAATTGTGAAGCCAAGCAGCCGAATTTTGCTATTAGGAAAGGTGCTCGTGTTCAACTGATTAAAAGTGGGAAGAAGATTGCTGCTTTTGTACCTAATGATGGTTGCTTGAATTATATGGAGGAAAAGGTAAGTTAA

mRNA sequence

ATGGTTCTTCTTAACATGGATATGTTTGCCTTTCTTTGTCTCTATCCGATTATCTGCATGGGGCAGAGGTGGGCAGATAAGGCGTATAAGAAATCTGATCTTGGTAATGAGCGGAAAAAGGCCCGTTGCAGTATCATCTCATGCAAAAGCGATTGTGCTAGAAAAGATAAGTTATTGAGGAATTGTGAAGCCAAGCAGCCGAATTTTGCTATTAGGAAAGGTGCTCGTGTTCAACTGATTAAAAGTGGGAAGAAGATTGCTGCTTTTGTACCTAATGATGGTTGCTTGAATTATATGGAGGAAAAGGTAAGTTAA

Coding sequence (CDS)

ATGGTTCTTCTTAACATGGATATGTTTGCCTTTCTTTGTCTCTATCCGATTATCTGCATGGGGCAGAGGTGGGCAGATAAGGCGTATAAGAAATCTGATCTTGGTAATGAGCGGAAAAAGGCCCGTTGCAGTATCATCTCATGCAAAAGCGATTGTGCTAGAAAAGATAAGTTATTGAGGAATTGTGAAGCCAAGCAGCCGAATTTTGCTATTAGGAAAGGTGCTCGTGTTCAACTGATTAAAAGTGGGAAGAAGATTGCTGCTTTTGTACCTAATGATGGTTGCTTGAATTATATGGAGGAAAAGGTAAGTTAA

Protein sequence

MVLLNMDMFAFLCLYPIICMGQRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIKSGKKIAAFVPNDGCLNYMEEKVS

Homology

[Close]

BLAST of Spg039857 vs. NCBI nr
Match: MBA0579576.1 (hypothetical protein [Gossypium raimondii])

HSP 1 Score: 101.7 bits (252), Expect = 4.0e-18
Identity = 56/83 (67.47%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 22  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIK 81
           QRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK
Sbjct: 108 QRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGI----EAKQPNSAIRKCARVQLIK 167

Query: 82  SGKKIAAFVPNDGCLNYMEEKVS 105
           +GKKIAAFVPNDGCLNY+EE VS
Sbjct: 168 NGKKIAAFVPNDGCLNYIEENVS 186

[Close]

BLAST of Spg039857 vs. NCBI nr
Match: EOY18544.1 (Ribosomal protein S12/S23 family protein isoform 2, partial [Theobroma cacao])

HSP 1 Score: 101.7 bits (252), Expect = 4.0e-18
Identity = 56/83 (67.47%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 22  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIK 81
           QRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK
Sbjct: 20  QRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGI----EAKQPNSAIRKCARVQLIK 79

Query: 82  SGKKIAAFVPNDGCLNYMEEKVS 105
           +GKKIAAFVPNDGCLNY+EE VS
Sbjct: 80  NGKKIAAFVPNDGCLNYIEENVS 98

[Close]

BLAST of Spg039857 vs. NCBI nr
Match: KAG6702635.1 (hypothetical protein I3842_07G045300 [Carya illinoinensis] >KAG7969681.1 hypothetical protein I3843_07G043800 [Carya illinoinensis])

HSP 1 Score: 101.7 bits (252), Expect = 4.0e-18
Identity = 56/83 (67.47%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 22  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIK 81
           QRWADK+YKKS L NE KK        K     K  +    EAKQPNFAIRK ARVQLIK
Sbjct: 20  QRWADKSYKKSHLRNEWKKPFAGSSHAKGIVLEKIGI----EAKQPNFAIRKCARVQLIK 79

Query: 82  SGKKIAAFVPNDGCLNYMEEKVS 105
           +GKKIAAFVPNDGCLNY+EEKVS
Sbjct: 80  NGKKIAAFVPNDGCLNYIEEKVS 98

[Close]

BLAST of Spg039857 vs. NCBI nr
Match: KJB36649.1 (hypothetical protein B456_006G168700 [Gossypium raimondii])

HSP 1 Score: 101.7 bits (252), Expect = 4.0e-18
Identity = 56/83 (67.47%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 22  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIK 81
           QRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK
Sbjct: 56  QRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGI----EAKQPNSAIRKCARVQLIK 115

Query: 82  SGKKIAAFVPNDGCLNYMEEKVS 105
           +GKKIAAFVPNDGCLNY+EE VS
Sbjct: 116 NGKKIAAFVPNDGCLNYIEENVS 134

[Close]

BLAST of Spg039857 vs. NCBI nr
Match: XP_039003020.1 (40S ribosomal protein S23-like [Hibiscus syriacus] >KAE8702084.1 40S ribosomal protein S23 [Hibiscus syriacus])

HSP 1 Score: 100.9 bits (250), Expect = 6.8e-18
Identity = 55/81 (67.90%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 21  GQRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLI 80
           GQRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLI
Sbjct: 13  GQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGI----EAKQPNSAIRKCARVQLI 72

Query: 81  KSGKKIAAFVPNDGCLNYMEE 102
           K+GKKIAAFVPNDGCLNY+EE
Sbjct: 73  KNGKKIAAFVPNDGCLNYIEE 89

[Close]

BLAST of Spg039857 vs. ExPASy Swiss-Prot
Match: Q9M5Z9 (40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-19
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 22  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIK 81
           QRWADK+YKKS LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK
Sbjct: 20  QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGI----EAKQPNSAIRKCARVQLIK 79

Query: 82  SGKKIAAFVPNDGCLNYMEE 102
           +GKKIAAFVPNDGCLNY+EE
Sbjct: 80  NGKKIAAFVPNDGCLNYIEE 95

[Close]

BLAST of Spg039857 vs. ExPASy Swiss-Prot
Match: P46297 (40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-19
Identity = 53/80 (66.25%), Postives = 57/80 (71.25%), Query Frame = 0


Query: 22  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIK 81
           QRWADK+YKKS LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK
Sbjct: 20  QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGI----EAKQPNSAIRKCARVQLIK 79

Query: 82  SGKKIAAFVPNDGCLNYMEE 102
           +GKKIAAFVPNDGCLNY+EE
Sbjct: 80  NGKKIAAFVPNDGCLNYIEE 95

[Close]

BLAST of Spg039857 vs. ExPASy Swiss-Prot
Match: P49201 (40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-19
Identity = 53/82 (64.63%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 20  MGQRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQL 79
           + QRWADK YKKS LGNE KK        K     K  +    EAKQPN AIRK ARVQL
Sbjct: 18  INQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGI----EAKQPNSAIRKCARVQL 77

Query: 80  IKSGKKIAAFVPNDGCLNYMEE 102
           IK+GKKIAAFVPNDGCLNY+EE
Sbjct: 78  IKNGKKIAAFVPNDGCLNYIEE 95

[Close]

BLAST of Spg039857 vs. ExPASy Swiss-Prot
Match: Q9SF35 (40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 1.9e-18
Identity = 52/80 (65.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 22  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIK 81
           QRWADK YKKS+ GNE KK      +C S            EAKQPN AIRK ARVQLIK
Sbjct: 20  QRWADKHYKKSNRGNEWKKP----FACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 79

Query: 82  SGKKIAAFVPNDGCLNYMEE 102
           +GKKIAAFVPNDGCLNY+EE
Sbjct: 80  NGKKIAAFVPNDGCLNYIEE 95

[Close]

BLAST of Spg039857 vs. ExPASy Swiss-Prot
Match: P90707 (40S ribosomal protein S23 OS=Brugia malayi OX=6279 GN=rps-23 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.6e-14
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 22  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIK 81
           QRW DK YKK+ LG  R KA     +  +     +K+    EAKQPN AIRK  RVQLIK
Sbjct: 20  QRWNDKGYKKAHLGT-RWKANPFGTASHAKGIVLEKV--GVEAKQPNSAIRKCVRVQLIK 79

Query: 82  SGKKIAAFVPNDGCLNYMEE 102
           +GKKI AFVPNDGCLN++EE
Sbjct: 80  NGKKITAFVPNDGCLNFIEE 96

[Close]

BLAST of Spg039857 vs. ExPASy TrEMBL
Match: A0A061FUQ3 (Ribosomal protein S12/S23 family protein isoform 2 (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_043077 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-18
Identity = 56/83 (67.47%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 22  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIK 81
           QRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK
Sbjct: 20  QRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGI----EAKQPNSAIRKCARVQLIK 79

Query: 82  SGKKIAAFVPNDGCLNYMEEKVS 105
           +GKKIAAFVPNDGCLNY+EE VS
Sbjct: 80  NGKKIAAFVPNDGCLNYIEENVS 98

[Close]

BLAST of Spg039857 vs. ExPASy TrEMBL
Match: A0A7J8NRM7 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=Gorai_021828 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-18
Identity = 56/83 (67.47%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 22  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIK 81
           QRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK
Sbjct: 108 QRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGI----EAKQPNSAIRKCARVQLIK 167

Query: 82  SGKKIAAFVPNDGCLNYMEEKVS 105
           +GKKIAAFVPNDGCLNY+EE VS
Sbjct: 168 NGKKIAAFVPNDGCLNYIEENVS 186

[Close]

BLAST of Spg039857 vs. ExPASy TrEMBL
Match: A0A0D2RXP4 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G168700 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-18
Identity = 56/83 (67.47%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 22  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIK 81
           QRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLIK
Sbjct: 56  QRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGI----EAKQPNSAIRKCARVQLIK 115

Query: 82  SGKKIAAFVPNDGCLNYMEEKVS 105
           +GKKIAAFVPNDGCLNY+EE VS
Sbjct: 116 NGKKIAAFVPNDGCLNYIEENVS 134

[Close]

BLAST of Spg039857 vs. ExPASy TrEMBL
Match: A0A6A3AC41 (40S ribosomal protein S23 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110503pilonHSYRG00766 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.3e-18
Identity = 55/81 (67.90%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 21  GQRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLI 80
           GQRWADKAYKKS+LGNE KK        K     K  +    EAKQPN AIRK ARVQLI
Sbjct: 13  GQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGI----EAKQPNSAIRKCARVQLI 72

Query: 81  KSGKKIAAFVPNDGCLNYMEE 102
           K+GKKIAAFVPNDGCLNY+EE
Sbjct: 73  KNGKKIAAFVPNDGCLNYIEE 89

[Close]

BLAST of Spg039857 vs. ExPASy TrEMBL
Match: A0A1D6NL35 (40S ribosomal protein S23-2 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d044342 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.3e-18
Identity = 55/83 (66.27%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 22  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIK 81
           QRWADKAYKKS LGNE KK        K     K       EAKQPNF IRK ARVQL+K
Sbjct: 14  QRWADKAYKKSHLGNEWKKPFAGSSHAKGIILAK----IGFEAKQPNFTIRKCARVQLVK 73

Query: 82  SGKKIAAFVPNDGCLNYMEEKVS 105
           +GKKIAAFVPNDGCLNY+EE VS
Sbjct: 74  NGKKIAAFVPNDGCLNYIEENVS 92

[Close]

BLAST of Spg039857 vs. TAIR 10
Match: AT5G02960.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 95.9 bits (237), Expect = 2.0e-20
Identity = 53/82 (64.63%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 20  MGQRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQL 79
           + QRWADK YKKS LGNE KK        K     K  +    EAKQPN AIRK ARVQL
Sbjct: 18  INQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGI----EAKQPNSAIRKCARVQL 77

Query: 80  IKSGKKIAAFVPNDGCLNYMEE 102
           IK+GKKIAAFVPNDGCLNY+EE
Sbjct: 78  IKNGKKIAAFVPNDGCLNYIEE 95

[Close]

BLAST of Spg039857 vs. TAIR 10
Match: AT3G09680.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-19
Identity = 52/80 (65.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 22  QRWADKAYKKSDLGNERKKARCSIISCKSDCARKDKLLRNCEAKQPNFAIRKGARVQLIK 81
           QRWADK YKKS+ GNE KK      +C S            EAKQPN AIRK ARVQLIK
Sbjct: 20  QRWADKHYKKSNRGNEWKKP----FACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 79

Query: 82  SGKKIAAFVPNDGCLNYMEE 102
           +GKKIAAFVPNDGCLNY+EE
Sbjct: 80  NGKKIAAFVPNDGCLNYIEE 95

The following BLAST results are available for this feature:

BLAST of Spg039857 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0579576.1	4.0e-18	67.47	hypothetical protein [Gossypium raimondii]	[more]
EOY18544.1	4.0e-18	67.47	Ribosomal protein S12/S23 family protein isoform 2, partial [Theobroma cacao]	[more]
KAG6702635.1	4.0e-18	67.47	hypothetical protein I3842_07G045300 [Carya illinoinensis] >KAG7969681.1 hypothe...	[more]
KJB36649.1	4.0e-18	67.47	hypothetical protein B456_006G168700 [Gossypium raimondii]	[more]
XP_039003020.1	6.8e-18	67.90	40S ribosomal protein S23-like [Hibiscus syriacus] >KAE8702084.1 40S ribosomal p...	[more]

BLAST of Spg039857 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M5Z9	2.2e-19	66.25	40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1	[more]
P46297	2.2e-19	66.25	40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1	[more]
P49201	2.9e-19	64.63	40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2	[more]
Q9SF35	1.9e-18	65.00	40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2	[more]
P90707	3.6e-14	57.50	40S ribosomal protein S23 OS=Brugia malayi OX=6279 GN=rps-23 PE=2 SV=1	[more]

BLAST of Spg039857 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A061FUQ3	1.9e-18	67.47	Ribosomal protein S12/S23 family protein isoform 2 (Fragment) OS=Theobroma cacao...	[more]
A0A7J8NRM7	1.9e-18	67.47	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=Gorai_021828 PE=3 SV=...	[more]
A0A0D2RXP4	1.9e-18	67.47	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G168700 PE=3 ...	[more]
A0A6A3AC41	3.3e-18	67.90	40S ribosomal protein S23 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110503pil...	[more]
A0A1D6NL35	4.3e-18	66.27	40S ribosomal protein S23-2 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d044342 PE=3 ...	[more]

BLAST of Spg039857 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02960.1	2.0e-20	64.63	Ribosomal protein S12/S23 family protein	[more]
AT3G09680.1	1.3e-19	65.00	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 27..104 e-value: 6.8E-14 score: 53.3
None	No IPR available	PANTHER	PTHR11652:SF53	BNAA03G00720D PROTEIN	coord: 20..102
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 61..102 e-value: 1.8E-14 score: 53.3
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 20..102
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 60..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg039857.1	Spg039857.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome