Spg039813 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg039813
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionWD repeat protein
Locationscaffold10: 40555473 .. 40558956 (-)
RNA-Seq ExpressionSpg039813
SyntenySpg039813
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCTCCCGTAGGAGGGAGGGGAGAAGAAAGAGACCGAAAGAAAGAGGCACAAGAGAAGCCCGTAGAAGGCACAGGAGTCCAGAACCTAGTGTCCCTGCTCCCATGGGGAAACGACTGGTTGACTAACAAGGAGAGGAGGCAAGTGATCTCTGTCGCTTCTCGATCAGTGAGGGAGCGACTGAAGTCTAGGGAAGGCGAAGAAAAATCATGGTCAGGGAAGACAGAAGCTACCGAATGCAACCTCTTCCTCGATAAAAGATAAAGCCGAGGAAACATAATGCTCAAAGGTTTTCCCCCACCCAAGAGTCCTCCCAGAAATAGGTATTAGAATCGTCTCCAATGGAGCATTTGATAAATTGAGAAAAGAGAGGAAAACTCGAAGCAATAGCAGTCCAGAGATTTTTGCTAGAACCTTTCAGCCTACCACTAGAAATCCACTCAAACGGGTGCGGACCATACAAACTCACAATAACCTTCCACCACAAAGCATTTGGCTCATTAAAGGAGCGCCATAACCATTTCCCCAAAAGGGTCTCGTTGCGATACCTCAGGTTGCCAATGCCTAATCCTCCCAAATCTTTGAGTTTAGAAACAACTTCCCACCTAATCAGATGAGCCCCTCCCCCCTCCTCCACACCTTCCCACAGAAAGTTTCTCATGAGACCTTCCAAATTCCTACACACAGACCTGGGTAACCTAAAGAGGGACAAAAAGTAAAGAGGAATCTCACTCAACACAGACTGAATCAACGTCAATCTCCCCCCTTTAGAGAAAAAGGCTTTCTTCCAGGAAGACAAACGAATGTCAATCCAAAAGAATGAGCCCCAATGGGCAATTACAAGATGTCTGATTAAGGGGCACCCATAAAGAAGAGTTAAATCTAATCAAATCTCAAGTCTCCTCTGTTGATCTCTCATTCTTTCTAAAAATACGGTCATTTCTCTCGAGCCAAATACCCCGCAAAATACTAAAGAAACAAGCTTCCCACAGAAACTAGTCTAGTTGATCATTGTTGTGGCACTCACACTATAATTCAATCCTAGTATATCTTATCTTTCATCTACTTATTTGGAGGGTCCTCCTTTGTCCTTTCACAATTTCCCCTCCAGAAGAGCCTTATCTGACCTGAAAATGCTTTTGGCTTTCCTCATTCGCTCCTCTTTGCAGCTTGTCTTCTCTTTTTTGACTGGCTGGGAAGGTTAACCTCTAAAAGAAGTTTAAGTTCTTTTCTGGGTCAATTATCCTTGGGATGCTCCACAGTGTCAATGTCTTTAAGAGGTTGACTTCTTTTGTGCTTAGTCTATCATGCTGCCTTATTTACAATGGCAGCAGAGGATGTGAACCATATTCTTAAGATGAGTATGTTTGTGGAGAAAAAATTTCAAATATTCTTGGTGATGTTGGCTCCCTCTTAGAGTTGCCATGGTATGATGGAGGAAATTGTCCTACATTTGCTGTTTTAGGACAAATGTCATCTTCTTGGATTCTTGCCATCTGGAACATTTGGGTGTTGATAAATAACAGGACTTTTTAGAGTATCCAAGGTTCTTGGAAAATATTTATGATGTACTTCACTTTAATGCCCACTATGGATCCATGAGTGAGTTTGGAATGAATTTTGAGTGGAGTACCTTATGAAAAAGGGGAAAAAGTTGCTTCTTCTAGTCTTAAAATAACGTTTTTAGAATTTTTGGTCATGTAGCCAAAATATTACAATACATTCAAAAAGAGATGCTTCTCGTTTAAAACGCCTTTCTCTATTCTAACAGGCAATGCCAAACAAACTCATGGTATGTTTGTCACCTTCCTTGTTTTTTGATGACTAGTTTTTGGGGCTCTTCCCTCTATTTTTTTCTTGGTTTATAATTAATCCAGTACCTTGGATGAACTGTTTCTCACACTGTGAGTTGTTTCCTGTCATACAAGTTCAAATTCATTTGTATATTTGACTATTAGTTTTATTTTTTCTGATATTTGTGTGTGTTTGGGCAACCGCCACGGGTTGGCCAGTGGTTAATTAATGCCATATAAATAATAAAGGAGTTAGGAATGAGTACAAATAATGGTGGTCATCTATCTAGGTTTTAATATCCTATGAATTGTCTTGCCTTGACAACAAATTCTAGTAAGGTTAGGTAATTGTCATGTGAGATTCATCGAAGTGCTTGCAAGCTGGCTCAACACTCATGGATATATAAAATGGAAAATTTTGGTACTTGGGCCAGCATATGCTTAAAACTATCAAATATTCTCCATGTTAATCTTGTGTGACAGTTACTTAGCAGTGTAACATTTGGCATTCGTAAGGTTACATTTAGTATCAATGGATCTCAGTTTTTAAAGATTTCAACTTTCTCTGACAAAAGACTATTTCATGGATGAGATGAAATTACAAAAAATGAAAGCATCAAGAGTTACGTGAATATTCTCACAGTCGAAGGAGTCGCAAAGTACTAATACACTCCAATGGACTCTTTTGCTGTCATTTGGTTTATTTGGCTAGAACGGAACACGCAGGTTTTCTATTGTTTTTTTAAGAATTCAAACTAATTCTTATTTTTGTTCTTTGCCAATTTGGGGGCTCCTTCTCTTCATCTTTGGTCTTTGTTTTTTGGTGCTACCCTTTTTTTACAAAGATGGTTATCCATTCAAAAAGTTATTTCTACTTTTGACAACAAAGGTGTCTAGTCATCCTGTCGAGGCTGTGTTTGTCAATTGATTCAGTTGATAATAACCTTATCGTGTTAATTGGAAAATGGATGGTAAGTGGCAAATTGATGCAGATATGCACTAATTTTGTTTGATGCTGTTTATATTTATTCTTTTGCATCAGATTCAAGCAAATAGCTAACTTCATATTTTATCTCTTTACTTCAGGATTCCCTGATCAAACCAGTAACCAGGATTATTTTTGGTGTGGCAATTATAACCGTTTTGATTACGTTTCTCTCTCGAGACTCACAAGGATGGATGAAGAAATTAAATATCAACGGGAACTTCCCTCCTTGGATTCTTGCTTGTGTCGTTATCGTTTTTACTCGCTCAAGGAAGAGAACTAGAGACTTGCTGAAAAAGTACGGTTGGTGAATCTCATTCTCTAGTCATTCCTCTACTTTTTTTCATCAATCCTCAATAGAAAATGGAAAGTAATTAATCAATATGTTGATTATTGTTTCTTGATTTGAAACTTTGGAAATAGGAGATTCGATACTGTATTGTATTAGCTAGGGAAAATGGAACATTCTTGGTCCATTGCTTTCATAAATTCCCTGCCTTGTTTTGTTCTTTGACATGTGTAGATAAAGCAGCTCTGTTTAGGAGACTGAAAAGTCAACATATTTTAAAGGAATATGTTTGACTCATGGTTTTATTTAGGTTGAGTTGAGTGATAGGTCTTATTGATTTGAGTTATGTACCTAATTTGTGATAAGTATTTCCACTTATTGGTTTGGTTTTATATTATGAGGTCAGACAAATCG

mRNA sequence

ATGGAGGCTCCCGTAGGAGGGAGGGGAGAAGAAAGAGACCGAAAGAAAGAGGCACAAGAGAAGCCCGTAGAAGGCACAGGAGTCCAGAACCTAGTGTCCCTGCTCCCATGGGGAAACGACTGGTTGACTAACAAGGAGAGGAGGCAAGCAATGCCAAACAAACTCATGGATTCCCTGATCAAACCAGTAACCAGGATTATTTTTGGTGTGGCAATTATAACCGTTTTGATTACGTTTCTCTCTCGAGACTCACAAGGATGGATGAAGAAATTAAATATCAACGGGAACTTCCCTCCTTGGATTCTTGCTTGTGTCGTTATCGTTTTTACTCGCTCAAGGAAGAGAACTAGAGACTTGCTGAAAAAGTACGGTTGGTGA

Coding sequence (CDS)

ATGGAGGCTCCCGTAGGAGGGAGGGGAGAAGAAAGAGACCGAAAGAAAGAGGCACAAGAGAAGCCCGTAGAAGGCACAGGAGTCCAGAACCTAGTGTCCCTGCTCCCATGGGGAAACGACTGGTTGACTAACAAGGAGAGGAGGCAAGCAATGCCAAACAAACTCATGGATTCCCTGATCAAACCAGTAACCAGGATTATTTTTGGTGTGGCAATTATAACCGTTTTGATTACGTTTCTCTCTCGAGACTCACAAGGATGGATGAAGAAATTAAATATCAACGGGAACTTCCCTCCTTGGATTCTTGCTTGTGTCGTTATCGTTTTTACTCGCTCAAGGAAGAGAACTAGAGACTTGCTGAAAAAGTACGGTTGGTGA

Protein sequence

MEAPVGGRGEERDRKKEAQEKPVEGTGVQNLVSLLPWGNDWLTNKERRQAMPNKLMDSLIKPVTRIIFGVAIITVLITFLSRDSQGWMKKLNINGNFPPWILACVVIVFTRSRKRTRDLLKKYGW
Homology
[Close]
BLAST of Spg039813 vs. NCBI nr
Match: XP_008456707.1 (PREDICTED: uncharacterized protein LOC103496571 [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-30
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 57  DSLIKPVTRIIFGVAIITVLITFLSRDSQGWMKKLNINGNFPPWILACVVIVFTRSRKRT 116
           DSLIKPVTRIIFGVAIIT+LITFLSRDSQGWMKKLNI GNFPPWILACVVIVFTRSRKRT
Sbjct: 124 DSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKLNITGNFPPWILACVVIVFTRSRKRT 183

Query: 117 RDLLKKYGW 126
           RDLLKKYGW
Sbjct: 184 RDLLKKYGW 192

[Close]
BLAST of Spg039813 vs. NCBI nr
Match: XP_004140944.1 (uncharacterized protein LOC101218374 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 3.2e-30
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 57  DSLIKPVTRIIFGVAIITVLITFLSRDSQGWMKKLNINGNFPPWILACVVIVFTRSRKRT 116
           DSLIKPVTRIIFGVAIIT+LITFLSRDSQGWMKKLNI GNFPPWILACVVIVFTRSRKRT
Sbjct: 124 DSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKLNITGNFPPWILACVVIVFTRSRKRT 183

Query: 117 RDLLKKYGW 126
           +DLLKKYGW
Sbjct: 184 KDLLKKYGW 192

[Close]
BLAST of Spg039813 vs. NCBI nr
Match: XP_038884244.1 (uncharacterized protein LOC120075142 [Benincasa hispida])

HSP 1 Score: 141.4 bits (355), Expect = 5.5e-30
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 57  DSLIKPVTRIIFGVAIITVLITFLSRDSQGWMKKLNINGNFPPWILACVVIVFTRSRKRT 116
           DSLIKPVTRIIFGVA+IT+LITFLSRDSQGWMKK NI GNFPPWILACVVIVFTRSRKRT
Sbjct: 143 DSLIKPVTRIIFGVAVITILITFLSRDSQGWMKKFNITGNFPPWILACVVIVFTRSRKRT 202

Query: 117 RDLLKKYGW 126
           RDLLKKYGW
Sbjct: 203 RDLLKKYGW 211

[Close]
BLAST of Spg039813 vs. NCBI nr
Match: XP_023518857.1 (uncharacterized protein LOC111782248 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.6 bits (327), Expect = 9.6e-27
Identity = 62/71 (87.32%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 57  DSLIKPVTRIIFGVAIITVLITFL--SRDSQGWMKKLNINGNFPPWILACVVIVFTRSRK 116
           DSLIKPVTRI+F VAIIT++IT L  SR+SQGWMKKLNI GNFPPWILACVVIVFTRSRK
Sbjct: 126 DSLIKPVTRIVFAVAIITIMITLLSTSRNSQGWMKKLNITGNFPPWILACVVIVFTRSRK 185

Query: 117 RTRDLLKKYGW 126
           RTRDLLKKYGW
Sbjct: 186 RTRDLLKKYGW 196

[Close]
BLAST of Spg039813 vs. NCBI nr
Match: XP_022990468.1 (uncharacterized protein LOC111487320 [Cucurbita maxima])

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 57  DSLIKPVTRIIFGVAIITVLITFL--SRDSQGWMKKLNINGNFPPWILACVVIVFTRSRK 116
           DSLIKPVTRI+F VAIIT+LIT L  SR+SQGWMKKLNI GNFPPWILACVVIVFTRSRK
Sbjct: 126 DSLIKPVTRIVFVVAIITILITLLSTSRNSQGWMKKLNITGNFPPWILACVVIVFTRSRK 185

Query: 117 RTRDLLKKYGW 126
           RTRDLLKKYGW
Sbjct: 186 RTRDLLKKYGW 196

[Close]
BLAST of Spg039813 vs. ExPASy TrEMBL
Match: A0A1S3C3V7 (uncharacterized protein LOC103496571 OS=Cucumis melo OX=3656 GN=LOC103496571 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.9e-31
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 57  DSLIKPVTRIIFGVAIITVLITFLSRDSQGWMKKLNINGNFPPWILACVVIVFTRSRKRT 116
           DSLIKPVTRIIFGVAIIT+LITFLSRDSQGWMKKLNI GNFPPWILACVVIVFTRSRKRT
Sbjct: 124 DSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKLNITGNFPPWILACVVIVFTRSRKRT 183

Query: 117 RDLLKKYGW 126
           RDLLKKYGW
Sbjct: 184 RDLLKKYGW 192

[Close]
BLAST of Spg039813 vs. ExPASy TrEMBL
Match: A0A0A0K9G4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052730 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 57  DSLIKPVTRIIFGVAIITVLITFLSRDSQGWMKKLNINGNFPPWILACVVIVFTRSRKRT 116
           DSLIKPVTRIIFGVAIIT+LITFLSRDSQGWMKKLNI GNFPPWILACVVIVFTRSRKRT
Sbjct: 124 DSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKLNITGNFPPWILACVVIVFTRSRKRT 183

Query: 117 RDLLKKYGW 126
           +DLLKKYGW
Sbjct: 184 KDLLKKYGW 192

[Close]
BLAST of Spg039813 vs. ExPASy TrEMBL
Match: A0A6J1JTD1 (uncharacterized protein LOC111487320 OS=Cucurbita maxima OX=3661 GN=LOC111487320 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 6.1e-27
Identity = 63/71 (88.73%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 57  DSLIKPVTRIIFGVAIITVLITFL--SRDSQGWMKKLNINGNFPPWILACVVIVFTRSRK 116
           DSLIKPVTRI+F VAIIT+LIT L  SR+SQGWMKKLNI GNFPPWILACVVIVFTRSRK
Sbjct: 126 DSLIKPVTRIVFVVAIITILITLLSTSRNSQGWMKKLNITGNFPPWILACVVIVFTRSRK 185

Query: 117 RTRDLLKKYGW 126
           RTRDLLKKYGW
Sbjct: 186 RTRDLLKKYGW 196

[Close]
BLAST of Spg039813 vs. ExPASy TrEMBL
Match: A0A6J1BYH2 (uncharacterized protein LOC111006735 OS=Momordica charantia OX=3673 GN=LOC111006735 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 6.1e-27
Identity = 61/68 (89.71%), Postives = 67/68 (98.53%), Query Frame = 0 

Query: 57  DSLIKPVTRIIFGVAIITVLITFLSRDSQGWMKKLNINGNFPPWILACVVIVFTRSRKRT 116
           DSLIKP+TRIIFGVAI+T+LITFLSR+SQG MKKLNI+GNFPPWILACVVIVFTRSRKRT
Sbjct: 126 DSLIKPITRIIFGVAILTILITFLSRESQGLMKKLNISGNFPPWILACVVIVFTRSRKRT 185

Query: 117 RDLLKKYG 125
           RDLLKK+G
Sbjct: 186 RDLLKKFG 193

[Close]
BLAST of Spg039813 vs. ExPASy TrEMBL
Match: A0A6J1HAT7 (uncharacterized protein LOC111461110 OS=Cucurbita moschata OX=3662 GN=LOC111461110 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.4e-25
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = 0 

Query: 57  DSLIKPVTRIIFGVAIITVLITFL--SRDSQGWMKKLNINGNFPPWILACVVIVFTRSRK 116
           DSLIKPVT I+F VAIIT++IT L  SR SQGWMK LNI GNFPPWILACVVIVFTRSRK
Sbjct: 126 DSLIKPVTGIVFVVAIITIMITLLSTSRSSQGWMKTLNITGNFPPWILACVVIVFTRSRK 185

Query: 117 RTRDLLKKYGW 126
           RTRDLLKKYGW
Sbjct: 186 RTRDLLKKYGW 196

[Close]
BLAST of Spg039813 vs. TAIR 10
Match: AT1G71780.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 34 Blast hits to 34 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-23
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 0 

Query: 57  DSLIKPVTRIIFGVAIITVLITFLSRDSQGWMKKLNINGNFPPWILACVVIVFTRSRKRT 116
           DSL+KP+TRII GV I+T+LITFL +D   W+K     G FPPW+LAC+VIVFTR+RKRT
Sbjct: 129 DSLLKPITRIILGVVIVTLLITFLLKDPPAWIKNNISIGTFPPWVLACIVIVFTRARKRT 188

Query: 117 RDLLKKYGW 126
           RD  KKYGW
Sbjct: 189 RDFFKKYGW 197

The following BLAST results are available for this feature:
BLAST of Spg039813 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008456707.11.4e-3097.10PREDICTED: uncharacterized protein LOC103496571 [Cucumis melo][more]
XP_004140944.13.2e-3095.65uncharacterized protein LOC101218374 [Cucumis sativus][more]
XP_038884244.15.5e-3094.20uncharacterized protein LOC120075142 [Benincasa hispida][more]
XP_023518857.19.6e-2787.32uncharacterized protein LOC111782248 [Cucurbita pepo subsp. pepo][more]
XP_022990468.11.3e-2688.73uncharacterized protein LOC111487320 [Cucurbita maxima][more]
BLAST of Spg039813 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg039813 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C3V76.9e-3197.10uncharacterized protein LOC103496571 OS=Cucumis melo OX=3656 GN=LOC103496571 PE=... [more]
A0A0A0K9G41.5e-3095.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G052730 PE=4 SV=1[more]
A0A6J1JTD16.1e-2788.73uncharacterized protein LOC111487320 OS=Cucurbita maxima OX=3661 GN=LOC111487320... [more]
A0A6J1BYH26.1e-2789.71uncharacterized protein LOC111006735 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
A0A6J1HAT74.4e-2584.51uncharacterized protein LOC111461110 OS=Cucurbita moschata OX=3662 GN=LOC1114611... [more]
BLAST of Spg039813 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G71780.11.4e-2366.67unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR35475:SF3SUBFAMILY NOT NAMEDcoord: 55..122
NoneNo IPR availablePANTHERPTHR35475WD REPEAT PROTEINcoord: 55..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg039813.1Spg039813.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane