Spg039801 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg039801
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ATP-dependent RNA helicase
Location	scaffold10: 41364318 .. 41368678 (-)
RNA-Seq Expression	Spg039801
Synteny	Spg039801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCTAGCCGCCTCGCCTACTCTCGCAAGTCACAGCAGCAGCAACAGCTCCAGAGCAAATCTTCGGCTCTCGAGTTTCAATGGCGAAAGGCGACGATGTGGTGATGAGAAAAAGGAACAAAGCTACCCGGAAGAAGCTCCGAAGTAAGAACGGAGACTCTTCCTCTTCGGTTTCTGCTCGCGTTGCCGCCATAATTGCCGCCAAGAAGCGGCGCAAGTCTGGTAAACGCAGAAAATGCCAGGTAGCTTCCCGAAGTATTCATTCTTGTTCGATTTCATCACGTTCTTTGATTTACGAAGTTATTGTATGATTTAGAGTAGCGTCCTGTGTTCGAGGGGTGATTCTAGTAAAATGAGGGTTATTCAGTTTGGGTTTCTCGTTGGTAGGCGAAGTTTATCTTGCTTCAGGGATGGTATAACTTATGAATCAGTGTTGTTCGATTCGTTGTACAATATGCGAATACTTTTTAGCGAAGAGGATTTTCTGTGATTGGTTTGGTTTGGTTAGATCATATCTATACTGTAAACTCGAAAATTCGGTTTGCTGCTTAAACATACCGACTTGTGGGACTTTGACTAGCTGAAGCCGCCGAAATGTCAACGTTTTTTGTTAGTCGTCTCTGTTGATCGATTTCCTGTTTCCGCTATTTAATTACTCTGTCTGCGTACTTGATATTTATACTCATCTCAATGGTTGTGAATATATGGAGTTTGAATTTGTTACATTACAGGGAATGTGCTTTAGCCTTCCTACTCCTGAGGATCCCTACAATGATAGGAATGGGAATAAGGATTTGAATAAGAAGGAAACCAAGGCCGTGCCTTCAAAAGGCTCCAAGAGGGAATTTCCAAAGGAGAAGAGTACTTCAGCACCTAACGGCCACATTGCTAAAAGAAGCAAGACTGATCACGAAAGAACAAAAGTTCATGCAAATGGGAAAGGCGGTGTACAAAGCTTTCAAGATGTAGGCTCTGAAAGTTCTCTCTCCCCGTCAAAGTTTCTAATGCTTTGCTTAAATGCAATAGAGAATGCCCTATGTCATGATTCCATCAAGAGAAATGGCAAGCCTCTGTTTGCTGATACTTGGGGAATTGAGTTCTGGAAATGTTATTCTTCTGGAAAGGATATCGTGGACACCAGTGGATTGTCTTCTACAGATGAGAAAATTGCATGGGTGGTTTCTTCAGCTGCTGACAGTATTGCTAGAAAAGAGAAAGAGGGTTTATCCTTTAGTAGCCCGTATCTTCTATTTCTTGTTCCTACACAAGAGAAAGCTACTCAGGTTCGCTCCATGTGCAAGCCATTAAAGGCCCTTGGAGTACATACAGTGAGCATACATCCTGGGGCATCCCTAGATCACCAAATTCAAGGGTAAGCTTGCCTGTGTATCATAATCCTTGTAACAGATTTTTGTCTGACCTTGTCTTTTATAGTACGAATTCTTTGTTTATCTTTCATCTTGTACCTGCCGCTGTTTATACAATTTGCACTCTATCCGCTTTTACTATTTTCTATCCAATTGGAAATTTATCTCTCTTCCCACAGTTTGAATAGCTGTGAACCTGAATTTCTCGTGTCAACTCCTGAGAGACTCTTGGAGCTTGTTGCCACGAAGGCTATTGATATTTCTGGTGTTTTATTGCTGGTAATTTGACCGTCTATGTTTATTATTTGAAGTATTGTTTTGTATTTTGTTATCCTCGATTTTTTTTTAATGATTTTTAATGATTATAAAATAACTCTACTGTTTAAAACTTCTTATCTGGTCATTCACTCTCCAGGCTTTATAGATATCCTTGCTACAATGTTCTGTCTCAATTATATTCTTCATTATATATATATATATAAAGAAACCATGCTTTCATTGAGAATAAAATGAAAGAATACACGAGGGCATACAAAAAAAACAAGCCCAACCAAAAACACCCGCCAAACTACAGGAACAGGTCCCAATCCAAAAGAATAAGACCTAGTTGATAATTACAAAAGAGCTTAGAAACCGAAGCCTTCAGGGACGTAGTAAATCTAATAGTCTCCGACAGCTCACTCGTGGATTTCTCCACCCCTCTAAAGATTCTATTGTTCCTCTCTAGCCAAATACCCCCAAGATAGCAAAAATTATATTCTTCAATTCCCATGTCTCCAAAAAAACAAAACCTCCAATTAAGGTCCCCGAAGATGACCAAATGGCTTGTTTTTACTTTAGAATTATATAGTATGTCACTGAATGCTTATTGTCAGTATTATGGACATTCTGTTTTAAGATTTATAATCTGTTGGGTTTTTTGTTTTTTTTTCCTTGACGTTTTATCAGGTTGTTGACGGACTGGAATCTCTTTCAAGAGGTGGTTATCTTGATATGATACAATCCATCAGGAAGTCTATATCGAGCAATCCACATACAATTGTTTTCAGTGATAGCTTCAGCTGTGCCCATGTTCCAGTTGTACAAGATCTCCTTGGAGGCCCAATTCGAAGACTGTCTCTTGATACTTCTGTGGCCAGTCAAAGTGCCTGCATTATCCAGTTGATAAACTTCTATATTTCTGAAGAGGAAAAATTATCAAAGGTACTTATGCACATCAACTTTACATATCTTAGTGCAGACCGTGCAATTGTGAACTGCAGGGAAATCTCTGCAGTCTTCCAATGCCTTCTTTAAATGGAAAAAAATGAAGATAAATTGTATGTTGTTATTGTGAACCTAACTTCTTAAACCTTGGGGTAGCAGTTAATTTCCAAGTTATGATGTAAAATGGATTGGTGTCTTATCCAAGCTTCTTGGAAACTTTTGATAGTGGATATGACCCTTACATTCTGATTCTGGTCAATCACTTTTGAACTTTTCACTTTTTAGTTGGTAATTCTTACTTCTAAAGTCATAGTTTGCAGCAATACTAAGAAAAGAAGCTTCTCCTTTTATCATTGACTTTTCATTTCACCGTCTCTTACTCTAGGATTGAGAATTTTATTAATAGTGTCATCATTAATGATCTTTGAAGGTCATCCAAGCTTTGGATCGAGTTAATGGCAGTCAACTCCGGCCACAGCCATTGAAGGTGCTATTTATTCTTGGGAAGGAGTGTAATGTTCACGAATTAGCTGCTGCTCTTAAATCCAAGGGCCATGATACCGTAGCTGGAGCATTATGTGGTGTCCCAGAATTTAAGAACAAGTAAGCATGCGCATGCCAATAGCTTGTTTATGCTTTTTTTTTTAAAAAAAAAAAAAAAAAAATTTAAAGTTTTGTAACATAAAATAAATATTAATTTTTAAATTAAAATTATTGATATATATATAGATATTTTCTTCCTGAAGCGAATGCATGGGCCTTGTTAACCATCAAGTGTGCGCTCATCATTTTTCTTGAATTTTTCATACGTCACTGCATTTAAGTTATTTACCAACGTATCCTTACTTGATTAGTAGTTCATTCCTTGTTTTCCTACTGGAATCCTGATTCTTTGATGGGTTTTCTGAAGAAGTTAGAGATTGTAAGACATGCATGTAGAGAGTAGGAATTCCTCTCCTTGTCGGGTAGAGTGTATGTGAATCTCAATTTGGTAAATATTGGCATTAGAACTGCGGATGCCAGAAGAATGTCAAACGTCCTTCAAACTTTTAATTATTATTAACCCTCCATCCTCTTCTGGGAAAAATGGATTGGCATGTGTTTCTTCCTCTAATTATTTTATGTTAAAGTATTTACTCATCATTATCATTATTATTACACAGCTTCCTAAGTGATCTATATTTGTACTTGTACTCTACTAAAACTAATTTATTTTTACTCTTTTCATGTTTGTTTAGTTCGGAAGTAGGCAGCAGACTCACGCCTTTAGTTGCCAAGATTGACATAGAGCAAGTTAACACCGTAGATCTCGAAAATTATGAATGCATATTCATACTCGATGCATTTCCACCAATAGACAAATATGTTCAAATTCTAACTGGAATGGCTCGACACACGGTCAATGGTGTTTTGCACAGCTTCATTACCAAGGAAGAAGCATCAGTTGCTGGTTCATTAGTTGAAATCCTTGAACAATGTGGGCAGGCTGTCCCTGAAACTGTAAGAAACTTATGCCTCACACAAGGCACATCTCAATCCTAAACATGAATCCTCCTAATTGTCATCATCATGTCTGTATAAAAAAAATTTTGACCATTGATATATTCTTTTTTTTATCACGTACTGGTTGGTTTCTACCTTTAATCAAAGAATTCTATACCTTGTCTATTTTTTTTACCCATGGCTATTTTTCATTCAGTTTAATGATGAATAGGAAGCTGGTGAGCACAGAGCTATTAGAACAGATATGGCTTCTTTACAATTCACTCTATTTGTTGAGAAGTATTGC

mRNA sequence

ATGGCGAAAGGCGACGATGTGGTGATGAGAAAAAGGAACAAAGCTACCCGGAAGAAGCTCCGAAGTAAGAACGGAGACTCTTCCTCTTCGGTTTCTGCTCGCGTTGCCGCCATAATTGCCGCCAAGAAGCGGCGCAAGTCTGGTAAACGCAGAAAATGCCAGGGAATGTGCTTTAGCCTTCCTACTCCTGAGGATCCCTACAATGATAGGAATGGGAATAAGGATTTGAATAAGAAGGAAACCAAGGCCGTGCCTTCAAAAGGCTCCAAGAGGGAATTTCCAAAGGAGAAGAGTACTTCAGCACCTAACGGCCACATTGCTAAAAGAAGCAAGACTGATCACGAAAGAACAAAAGTTCATGCAAATGGGAAAGGCGGTGTACAAAGCTTTCAAGATGTAGGCTCTGAAAGTTCTCTCTCCCCGTCAAAGTTTCTAATGCTTTGCTTAAATGCAATAGAGAATGCCCTATGTCATGATTCCATCAAGAGAAATGGCAAGCCTCTGTTTGCTGATACTTGGGGAATTGAGTTCTGGAAATGTTATTCTTCTGGAAAGGATATCGTGGACACCAGTGGATTGTCTTCTACAGATGAGAAAATTGCATGGGTGGTTTCTTCAGCTGCTGACAGTATTGCTAGAAAAGAGAAAGAGGGTTTATCCTTTAGTAGCCCGTATCTTCTATTTCTTGTTCCTACACAAGAGAAAGCTACTCAGGTTCGCTCCATGTGCAAGCCATTAAAGGCCCTTGGAGTACATACAGTGAGCATACATCCTGGGGCATCCCTAGATCACCAAATTCAAGGTTTGAATAGCTGTGAACCTGAATTTCTCGTGTCAACTCCTGAGAGACTCTTGGAGCTTGTTGCCACGAAGGCTATTGATATTTCTGGTGTTTTATTGCTGGTTGTTGACGGACTGGAATCTCTTTCAAGAGGTGGTTATCTTGATATGATACAATCCATCAGGAAGTCTATATCGAGCAATCCACATACAATTGTTTTCAGTGATAGCTTCAGCTGTGCCCATGTTCCAGTTGTACAAGATCTCCTTGGAGGCCCAATTCGAAGACTGTCTCTTGATACTTCTGTGGCCAGTCAAAGTGCCTGCATTATCCAGTTGATAAACTTCTATATTTCTGAAGAGGAAAAATTATCAAAGGTCATCCAAGCTTTGGATCGAGTTAATGGCAGTCAACTCCGGCCACAGCCATTGAAGGTGCTATTTATTCTTGGGAAGGAGTGTAATGTTCACGAATTAGCTGCTGCTCTTAAATCCAAGGGCCATGATACCGTAGCTGGAGCATTATGTGGTGTCCCAGAATTTAAGAACAATTCGGAAGTAGGCAGCAGACTCACGCCTTTAGTTGCCAAGATTGACATAGAGCAAGTTAACACCGTAGATCTCGAAAATTATGAATGCATATTCATACTCGATGCATTTCCACCAATAGACAAATATGTTCAAATTCTAACTGGAATGGCTCGACACACGGTCAATGGTGTTTTGCACAGCTTCATTACCAAGGAAGAAGCATCAGTTGCTGGTTCATTAGTTGAAATCCTTGAACAATGTGGGCAGGCTGTCCCTGAAACTGTAAGAAACTTATGCCTCACACAAGGCACATCTCAATCCTAA

Coding sequence (CDS)

ATGGCGAAAGGCGACGATGTGGTGATGAGAAAAAGGAACAAAGCTACCCGGAAGAAGCTCCGAAGTAAGAACGGAGACTCTTCCTCTTCGGTTTCTGCTCGCGTTGCCGCCATAATTGCCGCCAAGAAGCGGCGCAAGTCTGGTAAACGCAGAAAATGCCAGGGAATGTGCTTTAGCCTTCCTACTCCTGAGGATCCCTACAATGATAGGAATGGGAATAAGGATTTGAATAAGAAGGAAACCAAGGCCGTGCCTTCAAAAGGCTCCAAGAGGGAATTTCCAAAGGAGAAGAGTACTTCAGCACCTAACGGCCACATTGCTAAAAGAAGCAAGACTGATCACGAAAGAACAAAAGTTCATGCAAATGGGAAAGGCGGTGTACAAAGCTTTCAAGATGTAGGCTCTGAAAGTTCTCTCTCCCCGTCAAAGTTTCTAATGCTTTGCTTAAATGCAATAGAGAATGCCCTATGTCATGATTCCATCAAGAGAAATGGCAAGCCTCTGTTTGCTGATACTTGGGGAATTGAGTTCTGGAAATGTTATTCTTCTGGAAAGGATATCGTGGACACCAGTGGATTGTCTTCTACAGATGAGAAAATTGCATGGGTGGTTTCTTCAGCTGCTGACAGTATTGCTAGAAAAGAGAAAGAGGGTTTATCCTTTAGTAGCCCGTATCTTCTATTTCTTGTTCCTACACAAGAGAAAGCTACTCAGGTTCGCTCCATGTGCAAGCCATTAAAGGCCCTTGGAGTACATACAGTGAGCATACATCCTGGGGCATCCCTAGATCACCAAATTCAAGGTTTGAATAGCTGTGAACCTGAATTTCTCGTGTCAACTCCTGAGAGACTCTTGGAGCTTGTTGCCACGAAGGCTATTGATATTTCTGGTGTTTTATTGCTGGTTGTTGACGGACTGGAATCTCTTTCAAGAGGTGGTTATCTTGATATGATACAATCCATCAGGAAGTCTATATCGAGCAATCCACATACAATTGTTTTCAGTGATAGCTTCAGCTGTGCCCATGTTCCAGTTGTACAAGATCTCCTTGGAGGCCCAATTCGAAGACTGTCTCTTGATACTTCTGTGGCCAGTCAAAGTGCCTGCATTATCCAGTTGATAAACTTCTATATTTCTGAAGAGGAAAAATTATCAAAGGTCATCCAAGCTTTGGATCGAGTTAATGGCAGTCAACTCCGGCCACAGCCATTGAAGGTGCTATTTATTCTTGGGAAGGAGTGTAATGTTCACGAATTAGCTGCTGCTCTTAAATCCAAGGGCCATGATACCGTAGCTGGAGCATTATGTGGTGTCCCAGAATTTAAGAACAATTCGGAAGTAGGCAGCAGACTCACGCCTTTAGTTGCCAAGATTGACATAGAGCAAGTTAACACCGTAGATCTCGAAAATTATGAATGCATATTCATACTCGATGCATTTCCACCAATAGACAAATATGTTCAAATTCTAACTGGAATGGCTCGACACACGGTCAATGGTGTTTTGCACAGCTTCATTACCAAGGAAGAAGCATCAGTTGCTGGTTCATTAGTTGAAATCCTTGAACAATGTGGGCAGGCTGTCCCTGAAACTGTAAGAAACTTATGCCTCACACAAGGCACATCTCAATCCTAA

Protein sequence

MAKGDDVVMRKRNKATRKKLRSKNGDSSSSVSARVAAIIAAKKRRKSGKRRKCQGMCFSLPTPEDPYNDRNGNKDLNKKETKAVPSKGSKREFPKEKSTSAPNGHIAKRSKTDHERTKVHANGKGGVQSFQDVGSESSLSPSKFLMLCLNAIENALCHDSIKRNGKPLFADTWGIEFWKCYSSGKDIVDTSGLSSTDEKIAWVVSSAADSIARKEKEGLSFSSPYLLFLVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGLNSCEPEFLVSTPERLLELVATKAIDISGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSDSFSCAHVPVVQDLLGGPIRRLSLDTSVASQSACIIQLINFYISEEEKLSKVIQALDRVNGSQLRPQPLKVLFILGKECNVHELAAALKSKGHDTVAGALCGVPEFKNNSEVGSRLTPLVAKIDIEQVNTVDLENYECIFILDAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASVAGSLVEILEQCGQAVPETVRNLCLTQGTSQS

Homology

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BLAST of Spg039801 vs. NCBI nr
Match: XP_022134505.1 (pre-mRNA-processing ATP-dependent RNA helicase prp5 [Momordica charantia])

HSP 1 Score: 908.3 bits (2346), Expect = 3.2e-260
Identity = 481/570 (84.39%), Postives = 504/570 (88.42%), Query Frame = 0


Query: 1   MAKGDDVVMRKRNKATRKKLRSKNGDSSSSVSARVAAIIAAKKRRKSGKRRKCQGMCFSL 60
           MAKGDDV MRKRNKA RKKLRSK+G SSSSVSARVAAIIAAKKRRKSGKRR+CQGMCFSL
Sbjct: 1   MAKGDDVAMRKRNKAARKKLRSKDGASSSSVSARVAAIIAAKKRRKSGKRRQCQGMCFSL 60

Query: 61  PTPEDPYNDRNGNKDLNKKETKAVPSKGSKREFPKEKSTSAP------------------ 120
           PTP+DPYNDRNG KDLNK+ETK  PSKGSKR F K+KSTS+P                  
Sbjct: 61  PTPDDPYNDRNGKKDLNKRETKTTPSKGSKRAFSKDKSTSSPNGTVREVGREKSKPSKEG 120

Query: 121 ------NGHIAKRSKTDHERTKVHANGKGGVQSFQD--VGSESSLSPSKFLMLCLNAIEN 180
                 NGHIAKRSKTD ERTKVHAN KGGVQSFQ+    SES +SPSKFL+LCLNAIEN
Sbjct: 121 SGDTLSNGHIAKRSKTDPERTKVHANVKGGVQSFQNQREDSESCISPSKFLILCLNAIEN 180

Query: 181 ALCHDSIKRNGKPLFADTWGIEFWKCYSSGKDIVDTSGLSSTDEKIAWVVSSAADSIARK 240
           AL HDSI RNGKPLFADTWGIEFWKCYSSGKDI+DTSGLSSTDE+IAWVVSSAADSIARK
Sbjct: 181 ALHHDSINRNGKPLFADTWGIEFWKCYSSGKDILDTSGLSSTDEQIAWVVSSAADSIARK 240

Query: 241 EKEGLSFSSPYLLFLVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGLNSCEP 300
           EKEGLSFSSPYLL+LVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGL SCEP
Sbjct: 241 EKEGLSFSSPYLLYLVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGLKSCEP 300

Query: 301 EFLVSTPERLLELVATKAIDISGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNPHTIVF 360
           EFLVSTPERLLELVA KAIDISGV LLVVDGLESLSRGGYL+  QSIRKSISSN HTIVF
Sbjct: 301 EFLVSTPERLLELVAVKAIDISGVSLLVVDGLESLSRGGYLNKTQSIRKSISSNLHTIVF 360

Query: 361 SDSFSCAHVPVVQDLLGGPIRRLSLDTSVASQSACIIQLINFYISEEEKLSKVIQALDRV 420
           SDSFSCA+VPV+QDLL GPIRRLSLD SVASQSAC IQ INFY SEEEK SKVI+ALD+ 
Sbjct: 361 SDSFSCAYVPVLQDLLWGPIRRLSLDASVASQSACTIQSINFYTSEEEKRSKVIKALDQA 420

Query: 421 NGSQLRPQPLKVLFILGKECNVHELAAALKSKGHDTVAGALCGVPEFKNNSEVGSRLTPL 480
           NGSQ RPQ LKVLFILGKECNVHELA ALKSKGHD +AGAL GV EFKNN EV SRL P+
Sbjct: 421 NGSQHRPQLLKVLFILGKECNVHELATALKSKGHDILAGALFGVSEFKNNLEVDSRLRPV 480

Query: 481 VAKIDIEQVNTVDLENYECIFILDAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASVA 540
           VAKIDIEQ+NT+DL NYE IFILDAFPPIDKYVQILTGMARH+VNGVLHSFITKEEASVA
Sbjct: 481 VAKIDIEQINTIDLGNYETIFILDAFPPIDKYVQILTGMARHSVNGVLHSFITKEEASVA 540

Query: 541 GSLVEILEQCGQAVPETVRNLCLTQGTSQS 545
           GSLVEILEQCGQAVPETVR LCLTQGTS+S
Sbjct: 541 GSLVEILEQCGQAVPETVRYLCLTQGTSES 570

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BLAST of Spg039801 vs. NCBI nr
Match: XP_038886801.1 (ATP-dependent RNA helicase DBP3 [Benincasa hispida])

HSP 1 Score: 894.8 bits (2311), Expect = 3.7e-256
Identity = 476/566 (84.10%), Postives = 497/566 (87.81%), Query Frame = 0


Query: 1   MAKGDDVVMRKRNKATRKKLRSKNGDSSSSVSARVAAIIAAKKRRKSGKRRKCQGMCFSL 60
           MAKGDDVV RKRNKA RKKLRSKNGD SSSVSARVAAIIAAKKRR SGKRR+CQGMCFSL
Sbjct: 1   MAKGDDVVARKRNKANRKKLRSKNGD-SSSVSARVAAIIAAKKRRMSGKRRQCQGMCFSL 60

Query: 61  PTPEDPYNDRNGNKDLNKKETKAVPSKGSKREFPKEKSTSAPN----------------- 120
           PTP+DPYNDRNG KD  KK+TK  PSKGSKREFPKEKSTSAPN                 
Sbjct: 61  PTPDDPYNDRNGKKDF-KKDTKVTPSKGSKREFPKEKSTSAPNGTLRDVGREKVQSSKEG 120

Query: 121 -------GHIAKRSKTDHERTKVHANGKGGVQSFQDVGSESSLSPSKFLMLCLNAIENAL 180
                  GH+AKRSKT  ERTKV+AN KG VQ FQ+  SESS++PSKFLMLCLNAIE+AL
Sbjct: 121 SGGSLTSGHLAKRSKTSTERTKVYANVKGSVQGFQEENSESSITPSKFLMLCLNAIEDAL 180

Query: 181 CHDSIKRNGKPLFADTWGIEFWKCYSSGKDIVDTSGLSSTDEKIAWVVSSAADSIARKEK 240
            HDSIKR  KPLFADTWGIEFWKCYSSGKDI+DTSGLSSTDEKIAWVVSSAADSIAR EK
Sbjct: 181 YHDSIKRINKPLFADTWGIEFWKCYSSGKDILDTSGLSSTDEKIAWVVSSAADSIARTEK 240

Query: 241 EGLSFSSPYLLFLVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGLNSCEPEF 300
           EG SFSSPYLLFLVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGL SCEPEF
Sbjct: 241 EGSSFSSPYLLFLVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGLKSCEPEF 300

Query: 301 LVSTPERLLELVATKAIDISGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSD 360
           LVSTPERLLELVA +AIDISGV LLVVDGLESLSRGGYLDM QSIRKSISS  HTIVFSD
Sbjct: 301 LVSTPERLLELVAMQAIDISGVSLLVVDGLESLSRGGYLDMTQSIRKSISSKLHTIVFSD 360

Query: 361 SFSCAHVPVVQDLLGGPIRRLSLDTSVASQSACIIQLINFYISEEEKLSKVIQALDRVNG 420
           SFSCA+VPVVQ LLGGPIRRLSL+TSVA QSA IIQ INFY SEEEKLSKVIQALDR NG
Sbjct: 361 SFSCAYVPVVQSLLGGPIRRLSLNTSVACQSAYIIQSINFYTSEEEKLSKVIQALDRANG 420

Query: 421 SQLRPQPLKVLFILGKECNVHELAAALKSKGHDTVAGALCGVPEFKNNSEVGSRLTPLVA 480
           SQLRPQPLK+L ILGKECNVHELAAALKSKGHD VAGALCGVPE KNNS+V  RL P+VA
Sbjct: 421 SQLRPQPLKMLLILGKECNVHELAAALKSKGHDIVAGALCGVPEIKNNSKVDGRLRPVVA 480

Query: 481 KIDIEQVNTVDLENYECIFILDAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASVAGS 540
           KIDIEQ+N++DL NYE IFIL AFPPIDKYV ILTGMARHTVNGVLHSFI+KEEASVAGS
Sbjct: 481 KIDIEQINSIDLGNYESIFILSAFPPIDKYVWILTGMARHTVNGVLHSFISKEEASVAGS 540

Query: 541 LVEILEQCGQAVPETVRNLCLTQGTS 543
           LVEILEQCGQ VPETVRNL LTQG+S
Sbjct: 541 LVEILEQCGQDVPETVRNLFLTQGSS 564

[Close]

BLAST of Spg039801 vs. NCBI nr
Match: XP_022938928.1 (ATP-dependent RNA helicase DDX42 [Cucurbita moschata])

HSP 1 Score: 875.2 bits (2260), Expect = 3.0e-250
Identity = 465/567 (82.01%), Postives = 495/567 (87.30%), Query Frame = 0


Query: 1   MAKGDDVVMRKRNKATRKKLRSKNGDSSSSVSARVAAIIAAKKRRKSGKRRKCQGMCFSL 60
           MAKGDD + RKRNKA+RKKLRSKNGD SSSVSARVAAIIAAKKRRKSGKRR CQGMCFSL
Sbjct: 1   MAKGDDALARKRNKASRKKLRSKNGD-SSSVSARVAAIIAAKKRRKSGKRRNCQGMCFSL 60

Query: 61  PTPEDPYNDRNGNKDLNKKETKAVPSKGSKREFPKEKSTSAPN----------------- 120
           PT +DPYNDRNGNKDL+KKETK  PSKGSKREFPK+KS+SAPN                 
Sbjct: 61  PTLDDPYNDRNGNKDLDKKETKVTPSKGSKREFPKDKSSSAPNRTRGDACREKVRSSKEG 120

Query: 121 ------GHIAKRSKTDHERTKVHANGKGGVQSFQDVGSESSLSPSKFLMLCLNAIENALC 180
                 GHIAKRSKT  ERTKV+ANG+GGVQ FQ+ G +SS+SPSKFL+LCLNAIE AL 
Sbjct: 121 SGDATSGHIAKRSKTCPERTKVNANGEGGVQDFQEEGFDSSISPSKFLILCLNAIEKALY 180

Query: 181 HDSIKRNGKPLFADTWGIEFWKCYSSGKDIVDTSGLSSTDEKIAWVVSSAADSIARKEKE 240
           HDS K   KPL AD WGIEFWKCYSSGKDI+DTSGLSSTDEKIAWVVSSAADSIARKEKE
Sbjct: 181 HDSFKGINKPLSADAWGIEFWKCYSSGKDILDTSGLSSTDEKIAWVVSSAADSIARKEKE 240

Query: 241 GLSFSSPYLLFLVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGLNSCEPEFL 300
           GLSFSSPYLLFLVPTQEKAT VRSMCKPLKALGVHTVSIH GASLDHQIQGL SCEPEFL
Sbjct: 241 GLSFSSPYLLFLVPTQEKATHVRSMCKPLKALGVHTVSIHSGASLDHQIQGLKSCEPEFL 300

Query: 301 VSTPERLLELVATKAIDISGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSDS 360
           VSTPERLLELVA +AIDI+GV LLVVDGL+S S+GGYL+MIQSIRKSISSN HTIVFSDS
Sbjct: 301 VSTPERLLELVAMQAIDIAGVSLLVVDGLDSFSKGGYLEMIQSIRKSISSNLHTIVFSDS 360

Query: 361 FSCAHVPVVQDLLGGPIRRLSLDTSVASQSACIIQLINFYISEEEKLSKVIQALDRVNGS 420
           FSCA+VPVVQDLL GPI+RLSL+ SVAS+SACIIQ INF  SEE KLSKVIQALDR NGS
Sbjct: 361 FSCAYVPVVQDLLSGPIQRLSLNASVASRSACIIQSINFCTSEEGKLSKVIQALDRANGS 420

Query: 421 QLRPQPLKVLFILGKECNVHELAAALKSKGHDTVAGALCGVPEFKNNSEVGSRLTPLVAK 480
           QL PQPLK+LFILGKECNV ELAAALKSKGHD VAGAL GVPE KNNSEV SR  P+VAK
Sbjct: 421 QLCPQPLKMLFILGKECNVQELAAALKSKGHDIVAGALRGVPEIKNNSEVDSRWRPVVAK 480

Query: 481 IDIEQVNTVDLENYECIFILDAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASVAGSL 540
           ID+EQ+NT+DL NY+ IFIL AFP IDKYVQILTGMARHTVNGVLH+FITKEEAS AGSL
Sbjct: 481 IDMEQINTIDLGNYDSIFILYAFPSIDKYVQILTGMARHTVNGVLHTFITKEEASFAGSL 540

Query: 541 VEILEQCGQAVPETVRNLCLTQGTSQS 545
           VEILE+CGQAVPETVRNL LTQ TSQS
Sbjct: 541 VEILEECGQAVPETVRNLSLTQATSQS 566

[Close]

BLAST of Spg039801 vs. NCBI nr
Match: XP_022993206.1 (ATP-dependent RNA helicase DDX42 [Cucurbita maxima])

HSP 1 Score: 873.2 bits (2255), Expect = 1.1e-249
Identity = 463/567 (81.66%), Postives = 496/567 (87.48%), Query Frame = 0


Query: 1   MAKGDDVVMRKRNKATRKKLRSKNGDSSSSVSARVAAIIAAKKRRKSGKRRKCQGMCFSL 60
           MAKGDD + RKRNKA+RKKLRSKNGD SSSVSARVAAIIAAKKRRKSGKRR CQGMCFSL
Sbjct: 1   MAKGDDALARKRNKASRKKLRSKNGD-SSSVSARVAAIIAAKKRRKSGKRRNCQGMCFSL 60

Query: 61  PTPEDPYNDRNGNKDLNKKETKAVPSKGSKREFPKEKSTSAPN----------------- 120
           PT +DPYNDRNGNKDL+KKETK  PSKGSKREFPK+ S+SAPN                 
Sbjct: 61  PTLDDPYNDRNGNKDLDKKETKVRPSKGSKREFPKDNSSSAPNGTRGDACREKVRSSKEG 120

Query: 121 ------GHIAKRSKTDHERTKVHANGKGGVQSFQDVGSESSLSPSKFLMLCLNAIENALC 180
                 GHIAKRSKT  ERTKV+AN +G VQ FQ+ G +SS+SPSKFL+LCLNAIE AL 
Sbjct: 121 SGDATSGHIAKRSKTCPERTKVNANVEGSVQDFQEEGFDSSISPSKFLILCLNAIEKALY 180

Query: 181 HDSIKRNGKPLFADTWGIEFWKCYSSGKDIVDTSGLSSTDEKIAWVVSSAADSIARKEKE 240
           HDS K   +PL AD WGIEFWKCYSSGKDI+DTSGLSSTDEKIAWVVSSAADSIARKEKE
Sbjct: 181 HDSFKGINEPLPADAWGIEFWKCYSSGKDILDTSGLSSTDEKIAWVVSSAADSIARKEKE 240

Query: 241 GLSFSSPYLLFLVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGLNSCEPEFL 300
           GLSFSSPYLLFLVPTQEKATQ+RSMCKPLKALGVHTVSIH GASLDHQIQGL SCEPEFL
Sbjct: 241 GLSFSSPYLLFLVPTQEKATQIRSMCKPLKALGVHTVSIHSGASLDHQIQGLKSCEPEFL 300

Query: 301 VSTPERLLELVATKAIDISGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSDS 360
           VSTPERLLELVA +AIDI+GV LLVVDGL+S S+GG L+MIQSIRKSISSN +T VFSDS
Sbjct: 301 VSTPERLLELVAMQAIDIAGVSLLVVDGLDSFSKGGSLEMIQSIRKSISSNLYTFVFSDS 360

Query: 361 FSCAHVPVVQDLLGGPIRRLSLDTSVASQSACIIQLINFYISEEEKLSKVIQALDRVNGS 420
           FSCA+VPVVQDLL GPI+RLSL+TSVAS+SACIIQ INF+ SEEEKLSKVIQALDR NGS
Sbjct: 361 FSCAYVPVVQDLLSGPIQRLSLNTSVASRSACIIQSINFFTSEEEKLSKVIQALDRANGS 420

Query: 421 QLRPQPLKVLFILGKECNVHELAAALKSKGHDTVAGALCGVPEFKNNSEVGSRLTPLVAK 480
           QL PQPLK+LFILGKECNV ELAAALKSKGHD VAGALCGVPE KNNSEV SR  P+VAK
Sbjct: 421 QLCPQPLKMLFILGKECNVQELAAALKSKGHDIVAGALCGVPELKNNSEVDSRSRPVVAK 480

Query: 481 IDIEQVNTVDLENYECIFILDAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASVAGSL 540
           IDIEQ+NT+DL NY+ IFIL AFPPIDKYVQILTGMARHTVNGVLHSFITKEEAS AGSL
Sbjct: 481 IDIEQINTIDLGNYDSIFILYAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASFAGSL 540

Query: 541 VEILEQCGQAVPETVRNLCLTQGTSQS 545
           VEILE+CGQAVPETVRNL LT+ TSQS
Sbjct: 541 VEILEECGQAVPETVRNLSLTKATSQS 566

[Close]

BLAST of Spg039801 vs. NCBI nr
Match: XP_023550872.1 (ATP-dependent RNA helicase DDX42 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 865.9 bits (2236), Expect = 1.8e-247
Identity = 457/561 (81.46%), Postives = 492/561 (87.70%), Query Frame = 0


Query: 1   MAKGDDVVMRKRNKATRKKLRSKNGDSSSSVSARVAAIIAAKKRRKSGKRRKCQGMCFSL 60
           MAKGDD + RKRNK++RKKLRSKNGD SSSVSARVAAIIAAKKRRKSGKRR CQGMCFSL
Sbjct: 1   MAKGDDALARKRNKSSRKKLRSKNGD-SSSVSARVAAIIAAKKRRKSGKRRNCQGMCFSL 60

Query: 61  PTPEDPYNDRNGNKDLNKKETKAVPSKGSKREFPKEKSTSAPN----------------- 120
           PT +DPYNDRNGNKDL+KKE+K  PSKGSKREFPK+KS+SAPN                 
Sbjct: 61  PTLDDPYNDRNGNKDLDKKESKVRPSKGSKREFPKDKSSSAPNGTRGDACREKVRSSKEG 120

Query: 121 ------GHIAKRSKTDHERTKVHANGKGGVQSFQDVGSESSLSPSKFLMLCLNAIENALC 180
                 GHIAKRSKT  ERTKV+ N +GGVQ+FQ+ G +SS+SPSKFL+LCLNAIE AL 
Sbjct: 121 SGNATSGHIAKRSKTCPERTKVNVNVEGGVQNFQEEGFDSSISPSKFLILCLNAIEKALY 180

Query: 181 HDSIKRNGKPLFADTWGIEFWKCYSSGKDIVDTSGLSSTDEKIAWVVSSAADSIARKEKE 240
           HDS K   KPL AD WGIEFWKCYSSGKDI+DTSGLSSTDEKIAWVVSSAADSIARKEKE
Sbjct: 181 HDSFKGINKPLSADAWGIEFWKCYSSGKDILDTSGLSSTDEKIAWVVSSAADSIARKEKE 240

Query: 241 GLSFSSPYLLFLVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGLNSCEPEFL 300
           GLSFSSPYLLFLVPTQEKATQVRSMCKPLKALGVHTVSIH GASLDHQIQGL SCEPEFL
Sbjct: 241 GLSFSSPYLLFLVPTQEKATQVRSMCKPLKALGVHTVSIHSGASLDHQIQGLKSCEPEFL 300

Query: 301 VSTPERLLELVATKAIDISGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSDS 360
           VSTPERLLELVA +AIDI+GV LLVVDGL+S S+GGYL+MIQSIRKSISSN HTIVFSDS
Sbjct: 301 VSTPERLLELVAMQAIDIAGVSLLVVDGLDSFSKGGYLEMIQSIRKSISSNLHTIVFSDS 360

Query: 361 FSCAHVPVVQDLLGGPIRRLSLDTSVASQSACIIQLINFYISEEEKLSKVIQALDRVNGS 420
           FSCA+VPVVQDLL GPI+RLSL+TSVAS+SACIIQ +NF  SEEEKLSKVIQALDR N S
Sbjct: 361 FSCAYVPVVQDLLSGPIQRLSLNTSVASRSACIIQSLNFCTSEEEKLSKVIQALDRANDS 420

Query: 421 QLRPQPLKVLFILGKECNVHELAAALKSKGHDTVAGALCGVPEFKNNSEVGSRLTPLVAK 480
           QL PQPLK+LFILGKECNV ELAAALKSKGHD VAGALCGVPE KNNSEV SR  P+VAK
Sbjct: 421 QLCPQPLKMLFILGKECNVQELAAALKSKGHDIVAGALCGVPEIKNNSEVDSRSRPVVAK 480

Query: 481 IDIEQVNTVDLENYECIFILDAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASVAGSL 539
           ID+EQ+NT+DL NY+ IFIL AFPPIDKYVQILTGMARHTVNGVLH+FITKEEAS AGSL
Sbjct: 481 IDMEQINTIDLGNYDSIFILYAFPPIDKYVQILTGMARHTVNGVLHTFITKEEASFAGSL 540

[Close]

BLAST of Spg039801 vs. ExPASy Swiss-Prot
Match: Q7ZY47 (ATP-dependent RNA helicase DDX42 OS=Xenopus laevis OX=8355 GN=ddx42 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.9e-19
Identity = 85/328 (25.91%), Postives = 151/328 (46.04%), Query Frame = 0


Query: 215 EKEGLSFSSPYLLFLVPTQEKATQVRSMCKPL-KALGVHTVSIHPGASLDHQIQGLNSCE 274
           +KE      P  + + PT+E   Q+ S CK   KA  + +V+++ G S+  Q + L    
Sbjct: 315 QKELQPADGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQE-G 374

Query: 275 PEFLVSTPERLLELVATKAIDISGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNPHTIV 334
            E +V TP RL++ V  KA ++  V  LV D  + +   G+   ++SI   +  +  T++
Sbjct: 375 AEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQVRSIANHVRPDRQTLL 434

Query: 335 FSDSFSCAHVPVVQDLLGGPIRRLSLDTSVASQSACIIQLINFYISEEEKLSKVIQALDR 394
           FS +F      + +D+L  PIR +  D   A++   I Q++    S  EK + + + L  
Sbjct: 435 FSATFRKKIEKLARDILVDPIRVVQGDIGEANED--ITQVVEILPSGPEKWTWLTRRLVE 494

Query: 395 VNGSQLRPQPLKVLFILGKECNVHELAAALKSKGHDTVAGALCGVPEFKNNSEVGS---- 454
              +        VL  + K+ N  ELAA L+   H    G L G  +    ++V S    
Sbjct: 495 FTSTG------SVLVFVTKKANAEELAANLRQDDHP--LGLLHGDMDQSERNKVISDFKK 554

Query: 455 RLTPLVAKIDIEQVNTVDLENYECIFILDAFPPIDKYVQILTGMARHTVNGVLHSFITKE 514
           +  P++   D+     +D+ + + +   D    ID +   +    R    GV ++ +T +
Sbjct: 555 KSIPVLVATDV-AARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTSK 614

Query: 515 EASVAGSLVEILEQCGQAVPETVRNLCL 538
           E++ AG LV  LE   Q V + + +L +
Sbjct: 615 ESNFAGDLVRNLEGANQYVSKELLDLAM 630

[Close]

BLAST of Spg039801 vs. ExPASy Swiss-Prot
Match: Q5F485 (ATP-dependent RNA helicase DDX42 OS=Gallus gallus OX=9031 GN=DDX42 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 8.8e-19
Identity = 88/358 (24.58%), Postives = 164/358 (45.81%), Query Frame = 0


Query: 183 SGKDIVDTSGLSSTDEKIAWVVSSAADSIARKEKEGLSFSSPYLLFLVPTQEKATQVRSM 242
           SG+D++  +   S  +  A++       + +KE E      P  + + PT+E   Q+ S 
Sbjct: 289 SGRDMIGIAKTGS-GKTAAFIWPMLIHIMDQKELE--PGDGPIAVIVCPTRELCQQIHSE 348

Query: 243 CKPL-KALGVHTVSIHPGASLDHQIQGLNSCEPEFLVSTPERLLELVATKAIDISGVLLL 302
           CK   KA  + +V+++ G S+  Q + L     E +V TP RL++ V  KA ++  V  L
Sbjct: 349 CKRFGKAYNLRSVAVYGGGSMWEQAKALQE-GAEIVVCTPGRLIDHVKKKATNLQRVTYL 408

Query: 303 VVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSDSFSCAHVPVVQDLLGGPIRRLSLDT 362
           V D  + +   G+   ++SI   +  +  T++FS +F      + +D+L  PIR +  D 
Sbjct: 409 VFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDI 468

Query: 363 SVASQSACIIQLINFYISEEEKLSKVIQALDRVNGSQLRPQPLKVLFILGKECNVHELAA 422
             A++   + Q++  + S   K + + + L     S        VL  + K+ N  ELA 
Sbjct: 469 GEANED--VTQIVEIFPSGPSKWNWLTRRLVEFTSSG------SVLLFVTKKANAEELAN 528

Query: 423 ALKSKGHD--TVAGALCGVPEFKNNSEVGSRLTPLVAKIDIEQVNTVDLENYECIFILDA 482
            LK + H+   + G +      K  SE   +  P++   D+     +D+ + + +   D 
Sbjct: 529 NLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDV-AARGLDIPSIKTVINYDV 588

Query: 483 FPPIDKYVQILTGMARHTVNGVLHSFITKEEASVAGSLVEILEQCGQAVPETVRNLCL 538
              ID +   +    R    GV ++ +T ++++ AG LV  LE   Q V + + +L +
Sbjct: 589 ARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAM 633

[Close]

BLAST of Spg039801 vs. ExPASy Swiss-Prot
Match: Q810A7 (ATP-dependent RNA helicase DDX42 OS=Mus musculus OX=10090 GN=Ddx42 PE=1 SV=3)

HSP 1 Score: 96.3 bits (238), Expect = 1.1e-18
Identity = 89/360 (24.72%), Postives = 167/360 (46.39%), Query Frame = 0


Query: 183 SGKDIVDTSGLSSTDEKIAWVVSSAADSIARKEKEGLSFSSPYLLFLVPTQEKATQVRSM 242
           SG+D++  +   S  +  A++       + +KE E      P  + + PT+E   Q+ + 
Sbjct: 289 SGRDMIGIAKTGS-GKTAAFIWPMLIHIMDQKELE--PGDGPIAVIVCPTRELCQQIHAE 348

Query: 243 CKPL-KALGVHTVSIHPGASLDHQIQGLNSCEPEFLVSTPERLLELVATKAIDISGVLLL 302
           CK   KA  + +V+++ G S+  Q + L     E +V TP RL++ V  KA ++  V  L
Sbjct: 349 CKRFGKAYNLRSVAVYGGGSMWEQAKALQE-GAEIVVCTPGRLIDHVKKKATNLQRVSYL 408

Query: 303 VVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSDSFSCAHVPVVQDLLGGPIRRLSLDT 362
           V D  + +   G+   ++SI   +  +  T++FS +F      + +D+L  PIR +  D 
Sbjct: 409 VFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDI 468

Query: 363 SVASQSACIIQLINFYISEEEKLSKVIQALDRVNGSQLRPQPLKVLFILGKECNVHELAA 422
             A++   + Q++    S   K + + + L     S        VL  + K+ N  ELA+
Sbjct: 469 GEANED--VTQIVEILHSGPSKWNWLTRRLVEFTSSG------SVLLFVTKKANAEELAS 528

Query: 423 ALKSKGHDTVAGALCGVPEFKNNSEVGS----RLTPLVAKIDIEQVNTVDLENYECIFIL 482
            LK +GH+   G L G  +    ++V S    +  P++   D+     +D+ + + +   
Sbjct: 529 NLKQEGHN--LGLLHGDMDQSERNKVISDFKKKDIPVLVATDV-AARGLDIPSIKTVINY 588

Query: 483 DAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASVAGSLVEILEQCGQAVPETVRNLCL 538
           D    ID +   +    R    GV ++ +T ++++ AG LV  LE   Q V + + +L +
Sbjct: 589 DVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAM 633

[Close]

BLAST of Spg039801 vs. ExPASy Swiss-Prot
Match: Q86XP3 (ATP-dependent RNA helicase DDX42 OS=Homo sapiens OX=9606 GN=DDX42 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-18
Identity = 89/360 (24.72%), Postives = 166/360 (46.11%), Query Frame = 0


Query: 183 SGKDIVDTSGLSSTDEKIAWVVSSAADSIARKEKEGLSFSSPYLLFLVPTQEKATQVRSM 242
           SG+D++  +   S  +  A++       + +KE E      P  + + PT+E   Q+ + 
Sbjct: 289 SGRDMIGIAKTGS-GKTAAFIWPMLIHIMDQKELE--PGDGPIAVIVCPTRELCQQIHAE 348

Query: 243 CKPL-KALGVHTVSIHPGASLDHQIQGLNSCEPEFLVSTPERLLELVATKAIDISGVLLL 302
           CK   KA  + +V+++ G S+  Q + L     E +V TP RL++ V  KA ++  V  L
Sbjct: 349 CKRFGKAYNLRSVAVYGGGSMWEQAKALQE-GAEIVVCTPGRLIDHVKKKATNLQRVSYL 408

Query: 303 VVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSDSFSCAHVPVVQDLLGGPIRRLSLDT 362
           V D  + +   G+   ++SI   +  +  T++FS +F      + +D+L  PIR +  D 
Sbjct: 409 VFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDI 468

Query: 363 SVASQSACIIQLINFYISEEEKLSKVIQALDRVNGSQLRPQPLKVLFILGKECNVHELAA 422
             A++   + Q++    S   K + + + L     S        VL  + K+ N  ELA 
Sbjct: 469 GEANED--VTQIVEILHSGPSKWNWLTRRLVEFTSSG------SVLLFVTKKANAEELAN 528

Query: 423 ALKSKGHDTVAGALCGVPEFKNNSEVGS----RLTPLVAKIDIEQVNTVDLENYECIFIL 482
            LK +GH+   G L G  +    ++V S    +  P++   D+     +D+ + + +   
Sbjct: 529 NLKQEGHN--LGLLHGDMDQSERNKVISDFKKKDIPVLVATDV-AARGLDIPSIKTVINY 588

Query: 483 DAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASVAGSLVEILEQCGQAVPETVRNLCL 538
           D    ID +   +    R    GV ++ +T ++++ AG LV  LE   Q V + + +L +
Sbjct: 589 DVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAM 633

[Close]

BLAST of Spg039801 vs. ExPASy Swiss-Prot
Match: Q5R7D1 (ATP-dependent RNA helicase DDX42 OS=Pongo abelii OX=9601 GN=DDX42 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.3e-17
Identity = 88/360 (24.44%), Postives = 165/360 (45.83%), Query Frame = 0


Query: 183 SGKDIVDTSGLSSTDEKIAWVVSSAADSIARKEKEGLSFSSPYLLFLVPTQEKATQVRSM 242
           SG+D++  +   S  +  A++       + +KE E      P  + + PT+E   Q+ + 
Sbjct: 289 SGRDMIGIAKTGS-GKTAAFIWPMLIHIMDQKELE--PGDGPIAVIVCPTRELCQQIHAE 348

Query: 243 CKPL-KALGVHTVSIHPGASLDHQIQGLNSCEPEFLVSTPERLLELVATKAIDISGVLLL 302
            K   KA  + +V+++ G S+  Q + L     E +V TP RL++ V  KA ++  V  L
Sbjct: 349 GKRFGKAYNLRSVAVYGGGSMWEQAKALQE-GAEIVVCTPGRLIDHVKKKATNLQRVSYL 408

Query: 303 VVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSDSFSCAHVPVVQDLLGGPIRRLSLDT 362
           V D  + +   G+   ++SI   +  +  T++FS +F      + +D+L  PIR +  D 
Sbjct: 409 VFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDI 468

Query: 363 SVASQSACIIQLINFYISEEEKLSKVIQALDRVNGSQLRPQPLKVLFILGKECNVHELAA 422
             A++   + Q++    S   K + + + L     S        VL  + K+ N  ELA 
Sbjct: 469 GEANED--VTQIVEILHSGPSKWNWLTRRLVEFTSSG------SVLLFVTKKANAEELAN 528

Query: 423 ALKSKGHDTVAGALCGVPEFKNNSEVGS----RLTPLVAKIDIEQVNTVDLENYECIFIL 482
            LK +GH+   G L G  +    ++V S    +  P++   D+     +D+ + + +   
Sbjct: 529 NLKQEGHN--LGLLHGDMDQSERNKVISDFKKKDIPVLVATDV-AARGLDIPSIKTVINY 588

Query: 483 DAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASVAGSLVEILEQCGQAVPETVRNLCL 538
           D    ID +   +    R    GV ++ +T ++++ AG LV  LE   Q V + + +L +
Sbjct: 589 DVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAM 633

[Close]

BLAST of Spg039801 vs. ExPASy TrEMBL
Match: A0A6J1BYG8 (pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Momordica charantia OX=3673 GN=LOC111006731 PE=4 SV=1)

HSP 1 Score: 908.3 bits (2346), Expect = 1.6e-260
Identity = 481/570 (84.39%), Postives = 504/570 (88.42%), Query Frame = 0


Query: 1   MAKGDDVVMRKRNKATRKKLRSKNGDSSSSVSARVAAIIAAKKRRKSGKRRKCQGMCFSL 60
           MAKGDDV MRKRNKA RKKLRSK+G SSSSVSARVAAIIAAKKRRKSGKRR+CQGMCFSL
Sbjct: 1   MAKGDDVAMRKRNKAARKKLRSKDGASSSSVSARVAAIIAAKKRRKSGKRRQCQGMCFSL 60

Query: 61  PTPEDPYNDRNGNKDLNKKETKAVPSKGSKREFPKEKSTSAP------------------ 120
           PTP+DPYNDRNG KDLNK+ETK  PSKGSKR F K+KSTS+P                  
Sbjct: 61  PTPDDPYNDRNGKKDLNKRETKTTPSKGSKRAFSKDKSTSSPNGTVREVGREKSKPSKEG 120

Query: 121 ------NGHIAKRSKTDHERTKVHANGKGGVQSFQD--VGSESSLSPSKFLMLCLNAIEN 180
                 NGHIAKRSKTD ERTKVHAN KGGVQSFQ+    SES +SPSKFL+LCLNAIEN
Sbjct: 121 SGDTLSNGHIAKRSKTDPERTKVHANVKGGVQSFQNQREDSESCISPSKFLILCLNAIEN 180

Query: 181 ALCHDSIKRNGKPLFADTWGIEFWKCYSSGKDIVDTSGLSSTDEKIAWVVSSAADSIARK 240
           AL HDSI RNGKPLFADTWGIEFWKCYSSGKDI+DTSGLSSTDE+IAWVVSSAADSIARK
Sbjct: 181 ALHHDSINRNGKPLFADTWGIEFWKCYSSGKDILDTSGLSSTDEQIAWVVSSAADSIARK 240

Query: 241 EKEGLSFSSPYLLFLVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGLNSCEP 300
           EKEGLSFSSPYLL+LVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGL SCEP
Sbjct: 241 EKEGLSFSSPYLLYLVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGLKSCEP 300

Query: 301 EFLVSTPERLLELVATKAIDISGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNPHTIVF 360
           EFLVSTPERLLELVA KAIDISGV LLVVDGLESLSRGGYL+  QSIRKSISSN HTIVF
Sbjct: 301 EFLVSTPERLLELVAVKAIDISGVSLLVVDGLESLSRGGYLNKTQSIRKSISSNLHTIVF 360

Query: 361 SDSFSCAHVPVVQDLLGGPIRRLSLDTSVASQSACIIQLINFYISEEEKLSKVIQALDRV 420
           SDSFSCA+VPV+QDLL GPIRRLSLD SVASQSAC IQ INFY SEEEK SKVI+ALD+ 
Sbjct: 361 SDSFSCAYVPVLQDLLWGPIRRLSLDASVASQSACTIQSINFYTSEEEKRSKVIKALDQA 420

Query: 421 NGSQLRPQPLKVLFILGKECNVHELAAALKSKGHDTVAGALCGVPEFKNNSEVGSRLTPL 480
           NGSQ RPQ LKVLFILGKECNVHELA ALKSKGHD +AGAL GV EFKNN EV SRL P+
Sbjct: 421 NGSQHRPQLLKVLFILGKECNVHELATALKSKGHDILAGALFGVSEFKNNLEVDSRLRPV 480

Query: 481 VAKIDIEQVNTVDLENYECIFILDAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASVA 540
           VAKIDIEQ+NT+DL NYE IFILDAFPPIDKYVQILTGMARH+VNGVLHSFITKEEASVA
Sbjct: 481 VAKIDIEQINTIDLGNYETIFILDAFPPIDKYVQILTGMARHSVNGVLHSFITKEEASVA 540

Query: 541 GSLVEILEQCGQAVPETVRNLCLTQGTSQS 545
           GSLVEILEQCGQAVPETVR LCLTQGTS+S
Sbjct: 541 GSLVEILEQCGQAVPETVRYLCLTQGTSES 570

[Close]

BLAST of Spg039801 vs. ExPASy TrEMBL
Match: A0A6J1FKA1 (ATP-dependent RNA helicase DDX42 OS=Cucurbita moschata OX=3662 GN=LOC111444991 PE=4 SV=1)

HSP 1 Score: 875.2 bits (2260), Expect = 1.5e-250
Identity = 465/567 (82.01%), Postives = 495/567 (87.30%), Query Frame = 0


Query: 1   MAKGDDVVMRKRNKATRKKLRSKNGDSSSSVSARVAAIIAAKKRRKSGKRRKCQGMCFSL 60
           MAKGDD + RKRNKA+RKKLRSKNGD SSSVSARVAAIIAAKKRRKSGKRR CQGMCFSL
Sbjct: 1   MAKGDDALARKRNKASRKKLRSKNGD-SSSVSARVAAIIAAKKRRKSGKRRNCQGMCFSL 60

Query: 61  PTPEDPYNDRNGNKDLNKKETKAVPSKGSKREFPKEKSTSAPN----------------- 120
           PT +DPYNDRNGNKDL+KKETK  PSKGSKREFPK+KS+SAPN                 
Sbjct: 61  PTLDDPYNDRNGNKDLDKKETKVTPSKGSKREFPKDKSSSAPNRTRGDACREKVRSSKEG 120

Query: 121 ------GHIAKRSKTDHERTKVHANGKGGVQSFQDVGSESSLSPSKFLMLCLNAIENALC 180
                 GHIAKRSKT  ERTKV+ANG+GGVQ FQ+ G +SS+SPSKFL+LCLNAIE AL 
Sbjct: 121 SGDATSGHIAKRSKTCPERTKVNANGEGGVQDFQEEGFDSSISPSKFLILCLNAIEKALY 180

Query: 181 HDSIKRNGKPLFADTWGIEFWKCYSSGKDIVDTSGLSSTDEKIAWVVSSAADSIARKEKE 240
           HDS K   KPL AD WGIEFWKCYSSGKDI+DTSGLSSTDEKIAWVVSSAADSIARKEKE
Sbjct: 181 HDSFKGINKPLSADAWGIEFWKCYSSGKDILDTSGLSSTDEKIAWVVSSAADSIARKEKE 240

Query: 241 GLSFSSPYLLFLVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGLNSCEPEFL 300
           GLSFSSPYLLFLVPTQEKAT VRSMCKPLKALGVHTVSIH GASLDHQIQGL SCEPEFL
Sbjct: 241 GLSFSSPYLLFLVPTQEKATHVRSMCKPLKALGVHTVSIHSGASLDHQIQGLKSCEPEFL 300

Query: 301 VSTPERLLELVATKAIDISGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSDS 360
           VSTPERLLELVA +AIDI+GV LLVVDGL+S S+GGYL+MIQSIRKSISSN HTIVFSDS
Sbjct: 301 VSTPERLLELVAMQAIDIAGVSLLVVDGLDSFSKGGYLEMIQSIRKSISSNLHTIVFSDS 360

Query: 361 FSCAHVPVVQDLLGGPIRRLSLDTSVASQSACIIQLINFYISEEEKLSKVIQALDRVNGS 420
           FSCA+VPVVQDLL GPI+RLSL+ SVAS+SACIIQ INF  SEE KLSKVIQALDR NGS
Sbjct: 361 FSCAYVPVVQDLLSGPIQRLSLNASVASRSACIIQSINFCTSEEGKLSKVIQALDRANGS 420

Query: 421 QLRPQPLKVLFILGKECNVHELAAALKSKGHDTVAGALCGVPEFKNNSEVGSRLTPLVAK 480
           QL PQPLK+LFILGKECNV ELAAALKSKGHD VAGAL GVPE KNNSEV SR  P+VAK
Sbjct: 421 QLCPQPLKMLFILGKECNVQELAAALKSKGHDIVAGALRGVPEIKNNSEVDSRWRPVVAK 480

Query: 481 IDIEQVNTVDLENYECIFILDAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASVAGSL 540
           ID+EQ+NT+DL NY+ IFIL AFP IDKYVQILTGMARHTVNGVLH+FITKEEAS AGSL
Sbjct: 481 IDMEQINTIDLGNYDSIFILYAFPSIDKYVQILTGMARHTVNGVLHTFITKEEASFAGSL 540

Query: 541 VEILEQCGQAVPETVRNLCLTQGTSQS 545
           VEILE+CGQAVPETVRNL LTQ TSQS
Sbjct: 541 VEILEECGQAVPETVRNLSLTQATSQS 566

[Close]

BLAST of Spg039801 vs. ExPASy TrEMBL
Match: A0A6J1JVP3 (ATP-dependent RNA helicase DDX42 OS=Cucurbita maxima OX=3661 GN=LOC111489296 PE=4 SV=1)

HSP 1 Score: 873.2 bits (2255), Expect = 5.5e-250
Identity = 463/567 (81.66%), Postives = 496/567 (87.48%), Query Frame = 0


Query: 1   MAKGDDVVMRKRNKATRKKLRSKNGDSSSSVSARVAAIIAAKKRRKSGKRRKCQGMCFSL 60
           MAKGDD + RKRNKA+RKKLRSKNGD SSSVSARVAAIIAAKKRRKSGKRR CQGMCFSL
Sbjct: 1   MAKGDDALARKRNKASRKKLRSKNGD-SSSVSARVAAIIAAKKRRKSGKRRNCQGMCFSL 60

Query: 61  PTPEDPYNDRNGNKDLNKKETKAVPSKGSKREFPKEKSTSAPN----------------- 120
           PT +DPYNDRNGNKDL+KKETK  PSKGSKREFPK+ S+SAPN                 
Sbjct: 61  PTLDDPYNDRNGNKDLDKKETKVRPSKGSKREFPKDNSSSAPNGTRGDACREKVRSSKEG 120

Query: 121 ------GHIAKRSKTDHERTKVHANGKGGVQSFQDVGSESSLSPSKFLMLCLNAIENALC 180
                 GHIAKRSKT  ERTKV+AN +G VQ FQ+ G +SS+SPSKFL+LCLNAIE AL 
Sbjct: 121 SGDATSGHIAKRSKTCPERTKVNANVEGSVQDFQEEGFDSSISPSKFLILCLNAIEKALY 180

Query: 181 HDSIKRNGKPLFADTWGIEFWKCYSSGKDIVDTSGLSSTDEKIAWVVSSAADSIARKEKE 240
           HDS K   +PL AD WGIEFWKCYSSGKDI+DTSGLSSTDEKIAWVVSSAADSIARKEKE
Sbjct: 181 HDSFKGINEPLPADAWGIEFWKCYSSGKDILDTSGLSSTDEKIAWVVSSAADSIARKEKE 240

Query: 241 GLSFSSPYLLFLVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGLNSCEPEFL 300
           GLSFSSPYLLFLVPTQEKATQ+RSMCKPLKALGVHTVSIH GASLDHQIQGL SCEPEFL
Sbjct: 241 GLSFSSPYLLFLVPTQEKATQIRSMCKPLKALGVHTVSIHSGASLDHQIQGLKSCEPEFL 300

Query: 301 VSTPERLLELVATKAIDISGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSDS 360
           VSTPERLLELVA +AIDI+GV LLVVDGL+S S+GG L+MIQSIRKSISSN +T VFSDS
Sbjct: 301 VSTPERLLELVAMQAIDIAGVSLLVVDGLDSFSKGGSLEMIQSIRKSISSNLYTFVFSDS 360

Query: 361 FSCAHVPVVQDLLGGPIRRLSLDTSVASQSACIIQLINFYISEEEKLSKVIQALDRVNGS 420
           FSCA+VPVVQDLL GPI+RLSL+TSVAS+SACIIQ INF+ SEEEKLSKVIQALDR NGS
Sbjct: 361 FSCAYVPVVQDLLSGPIQRLSLNTSVASRSACIIQSINFFTSEEEKLSKVIQALDRANGS 420

Query: 421 QLRPQPLKVLFILGKECNVHELAAALKSKGHDTVAGALCGVPEFKNNSEVGSRLTPLVAK 480
           QL PQPLK+LFILGKECNV ELAAALKSKGHD VAGALCGVPE KNNSEV SR  P+VAK
Sbjct: 421 QLCPQPLKMLFILGKECNVQELAAALKSKGHDIVAGALCGVPELKNNSEVDSRSRPVVAK 480

Query: 481 IDIEQVNTVDLENYECIFILDAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASVAGSL 540
           IDIEQ+NT+DL NY+ IFIL AFPPIDKYVQILTGMARHTVNGVLHSFITKEEAS AGSL
Sbjct: 481 IDIEQINTIDLGNYDSIFILYAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASFAGSL 540

Query: 541 VEILEQCGQAVPETVRNLCLTQGTSQS 545
           VEILE+CGQAVPETVRNL LT+ TSQS
Sbjct: 541 VEILEECGQAVPETVRNLSLTKATSQS 566

[Close]

BLAST of Spg039801 vs. ExPASy TrEMBL
Match: A0A0A0LQJ4 (DEAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G386150 PE=4 SV=1)

HSP 1 Score: 858.2 bits (2216), Expect = 1.8e-245
Identity = 453/568 (79.75%), Postives = 487/568 (85.74%), Query Frame = 0


Query: 1   MAKGDDVVMRKRNKATRKKLRSKNGDSSSSVSARVAAIIAAKKRRKSGKRRKCQGMCFSL 60
           MAKGDD + RKRNKA+RKKLRSK+GD SS+VSARVA+IIAAKKRR SGKRR+CQGMCFSL
Sbjct: 1   MAKGDDALTRKRNKASRKKLRSKSGD-SSAVSARVASIIAAKKRRMSGKRRQCQGMCFSL 60

Query: 61  PTPEDPYNDRNGNKDLNKKETKAVPSKGSKREFPKEKSTSAPN----------------- 120
           PTP+DPYNDRNG     KK+TK  PSK SKREFPKEKSTSAPN                 
Sbjct: 61  PTPDDPYNDRNG-----KKDTKVKPSKSSKREFPKEKSTSAPNGTLRDVCFENARSSKEG 120

Query: 121 -------GHIAKRSKTDHERTKVHANGKGGVQSFQDVGSESSLSPSKFLMLCLNAIENAL 180
                  G +AKRSKTD ERTK + N KG VQ FQ+  SESS++PSKFL+LCL+AIENAL
Sbjct: 121 SGGTLPSGRVAKRSKTDPERTKEYGNAKGSVQGFQEEDSESSVAPSKFLILCLSAIENAL 180

Query: 181 CHDSIKRNGKPLFADTWGIEFWKCYSSGKDIVDTSGLSSTDEKIAWVVSSAADSIARKEK 240
            HDSIK   KPLFADTWGIEFWKCYSSGKDI+DTSGLSSTDEKIAWVVSSAADSIARKEK
Sbjct: 181 YHDSIKSINKPLFADTWGIEFWKCYSSGKDILDTSGLSSTDEKIAWVVSSAADSIARKEK 240

Query: 241 EGLSFSSPYLLFLVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGLNSCEPEF 300
           EG SFSSP+LLFLVP QEKATQ+RSMCKPLKALGVHTVSIHPGASL HQIQGL SCEPEF
Sbjct: 241 EGSSFSSPFLLFLVPNQEKATQIRSMCKPLKALGVHTVSIHPGASLGHQIQGLKSCEPEF 300

Query: 301 LVSTPERLLELVATKAIDISGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSD 360
           LVSTPERLLELVA +AIDISGV LLVVDGLESLSRGGYLDM QSIRKSISS  HTIVFSD
Sbjct: 301 LVSTPERLLELVAMQAIDISGVSLLVVDGLESLSRGGYLDMTQSIRKSISSKLHTIVFSD 360

Query: 361 SFSCAHVPVVQDLLGGPIRRLSLDTSVASQSACIIQLINFYISEEEKLSKVIQALDRVNG 420
           SFSCA+VP +Q LLGGPIRRLSL+TSVA QSACIIQ INFY SE+EKLSKVIQALDR NG
Sbjct: 361 SFSCAYVPFIQSLLGGPIRRLSLNTSVACQSACIIQSINFYTSEKEKLSKVIQALDRANG 420

Query: 421 SQLRPQPLKVLFILGKECNVHELAAALKSKGHDTVAGALCGVPEFKNNSEVGSRLTPLVA 480
           SQ+RPQPLK+LFILGKECNVH+LAAALK KGHD VAGALCGVPE KNN +V  +L P+VA
Sbjct: 421 SQIRPQPLKMLFILGKECNVHDLAAALKFKGHDIVAGALCGVPEIKNNLKVDGKLRPVVA 480

Query: 481 KIDIEQVNTVDLENYECIFILDAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASVAGS 540
           K DIEQ+NT+DL  YE IFIL AFPPIDKYV+ILTGMARHT NGVLHSFI+KEEASVAGS
Sbjct: 481 KTDIEQINTIDLGTYESIFILSAFPPIDKYVEILTGMARHTNNGVLHSFISKEEASVAGS 540

Query: 541 LVEILEQCGQAVPETVRNLCLTQGTSQS 545
           LVEILEQCGQ VP+TVRNL LTQ TS S
Sbjct: 541 LVEILEQCGQDVPKTVRNLSLTQATSHS 562

[Close]

BLAST of Spg039801 vs. ExPASy TrEMBL
Match: A0A5D3CIJ6 (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00610 PE=4 SV=1)

HSP 1 Score: 855.5 bits (2209), Expect = 1.2e-244
Identity = 454/568 (79.93%), Postives = 487/568 (85.74%), Query Frame = 0


Query: 1   MAKGDDVVMRKRNKATRKKLRSKNGDSSSSVSARVAAIIAAKKRRKSGKRRKCQGMCFSL 60
           MAKGDD + RKRNKA RKKLRSK+GD SSSVSAR+A+IIAAKKRR SGKRR+CQGMCFSL
Sbjct: 1   MAKGDDALTRKRNKAARKKLRSKSGD-SSSVSARIASIIAAKKRRMSGKRRQCQGMCFSL 60

Query: 61  PTPEDPYNDRNGNKDLNKKETKAVPSKGSKREFPKEKSTSAPN----------------- 120
           PTP+DPYNDRNG     KK+TK  PSKGSKREFPKEKSTSAPN                 
Sbjct: 61  PTPDDPYNDRNG-----KKDTKVKPSKGSKREFPKEKSTSAPNGTLRDVGRENARSSKEG 120

Query: 121 -------GHIAKRSKTDHERTKVHANGKGGVQSFQDVGSESSLSPSKFLMLCLNAIENAL 180
                  G +AKRSKTD ERTK   N KG VQ FQ+  SESS++PSKFL+LCLNAIENAL
Sbjct: 121 SGGTLPSGRLAKRSKTDPERTKEFGNAKGSVQGFQEEDSESSVAPSKFLILCLNAIENAL 180

Query: 181 CHDSIKRNGKPLFADTWGIEFWKCYSSGKDIVDTSGLSSTDEKIAWVVSSAADSIARKEK 240
            HDSIKR  KPLFADTWGIEFWKCYSSGKDI+DTSGLSSTDEKIAWVVSSAADSIARK+K
Sbjct: 181 YHDSIKRINKPLFADTWGIEFWKCYSSGKDILDTSGLSSTDEKIAWVVSSAADSIARKDK 240

Query: 241 EGLSFSSPYLLFLVPTQEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGLNSCEPEF 300
           EG SFSSPYLLFLVP QEKATQ+RSMCKPLKALGVHTVSIHPGASL HQIQGL SCEPEF
Sbjct: 241 EGSSFSSPYLLFLVPNQEKATQIRSMCKPLKALGVHTVSIHPGASLGHQIQGLKSCEPEF 300

Query: 301 LVSTPERLLELVATKAIDISGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSD 360
           LVSTPERLLELVA +AIDISGV LLVVDGLESLS+GGYLDM QSIRKSISS  HTIVFSD
Sbjct: 301 LVSTPERLLELVAMQAIDISGVSLLVVDGLESLSKGGYLDMTQSIRKSISSKLHTIVFSD 360

Query: 361 SFSCAHVPVVQDLLGGPIRRLSLDTSVASQSACIIQLINFYISEEEKLSKVIQALDRVNG 420
           SFS A+VPV+Q LLGGP+RRLSL+TSVA QSACIIQ INFY SE+EKLSKVIQALDR NG
Sbjct: 361 SFSRAYVPVIQSLLGGPVRRLSLNTSVACQSACIIQSINFYTSEKEKLSKVIQALDRANG 420

Query: 421 SQLRPQPLKVLFILGKECNVHELAAALKSKGHDTVAGALCGVPEFKNNSEVGSRLTPLVA 480
           S L PQPLK+LFILGKECNVHELAAALKSKGHD VAGALCGVPE KNNS+V  +L  +VA
Sbjct: 421 SPLCPQPLKMLFILGKECNVHELAAALKSKGHDIVAGALCGVPEIKNNSKVDGKLRYVVA 480

Query: 481 KIDIEQVNTVDLENYECIFILDAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASVAGS 540
           K  IEQ++T+D+  YE IFIL AFPPIDKYV+ILTGMARHTVNGVLHSFI+KEEASVAGS
Sbjct: 481 KTHIEQISTIDIGIYESIFILSAFPPIDKYVEILTGMARHTVNGVLHSFISKEEASVAGS 540

Query: 541 LVEILEQCGQAVPETVRNLCLTQGTSQS 545
           LVEILEQCGQ VP+TVRNL LTQGTS S
Sbjct: 541 LVEILEQCGQDVPKTVRNLSLTQGTSHS 562

[Close]

BLAST of Spg039801 vs. TAIR 10
Match: AT2G28600.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 451.4 bits (1160), Expect = 1.0e-126
Identity = 260/545 (47.71%), Postives = 350/545 (64.22%), Query Frame = 0


Query: 1   MAKGDDVVMRKRNKATRKKLRSKNGDSSSSVSARVAAIIAAKKRRKSGKRRKCQGMCFSL 60
           MAKGDD V RK+NK TRKK+  KN   +++VSAR+AAIIAAKKRRKSGKR  CQGMCF+L
Sbjct: 1   MAKGDDNVQRKKNKVTRKKMSRKN--DTATVSARIAAIIAAKKRRKSGKRSMCQGMCFTL 60

Query: 61  PTPEDPYNDRNGNKDLNKKETKAVPSKGSKREFPKEKSTSAPNGHIAKRSKTDHERTKVH 120
           PT EDP+N+R G  D+ KK+ K    K  + + P   S                      
Sbjct: 61  PTLEDPFNERQGKADITKKKKKKKKVKSREDKKPSPMSIE-------------------- 120

Query: 121 ANGKGGVQSFQDVGSESSLSPSKFLMLCLNAIENALCHDSI--KRNGKPLFADTWGIEFW 180
                        G E    P KFLML LN IE++   D    +++ K LF  +WGIEFW
Sbjct: 121 -------------GVEKMDGPPKFLMLNLNEIESSFRKDITYSEQHDKSLFTSSWGIEFW 180

Query: 181 KCYSSGKDIVDTSGLSSTDEKIAWVVSSAADSIARKEK------EGLSFSSPYLLFLVPT 240
           KCYSSG DI+DTSG+SST E+IAW+VS+AAD+IAR+EK      E L  +SP+LL+LVP+
Sbjct: 181 KCYSSGNDILDTSGMSSTVEQIAWIVSTAADAIARREKDEVEEEEELLGNSPFLLYLVPS 240

Query: 241 QEKATQVRSMCKPLKALGVHTVSIHPGASLDHQIQGLNSCEPEFLVSTPERLLELVATKA 300
           Q KA+QVRS+CK LK +G+HTVS+H GA LDHQI GL S EPEF+V+TPERLLE+V  K 
Sbjct: 241 QSKASQVRSVCKALKGIGIHTVSLHQGAPLDHQISGLKSVEPEFIVATPERLLEIVTLKG 300

Query: 301 IDISGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSDSFSCAHVPVVQDLLGG 360
           +DIS V LLV+D L SL  GGYL+ ++SI+++ISS   TIVF++SFS + +P VQ  LGG
Sbjct: 301 VDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFSASIIPAVQSFLGG 360

Query: 361 PIRRLSLDTSVASQSACIIQLINFYISEEEKLSKVIQALDRVNGSQLRPQPLKVLFILGK 420
            + R++++ SVASQ +CI Q ++   SEE+KL K  + LD  +         K+++I+ K
Sbjct: 361 SVNRVTVNESVASQGSCITQTVSVCASEEKKLQKFAKHLDSSSS--------KLIYIVTK 420

Query: 421 ECNVHELAAALKSKGHDTVAGALCGVPEFKNNSEVGSRLTPLVAKIDIEQVNTVDLENYE 480
           E +  ++ A LK KG      +   + E K + +      P+   ID EQ++T  + + E
Sbjct: 421 EESFKKIMAILKLKGISVSTSSDSKLSEVKKSRK------PVAHLIDFEQLDTTVMRDSE 480

Query: 481 CIFILDAFPPIDKYVQILTGMARHTVNGVLHSFITKEEAS--VAGSLVEILEQCGQAVPE 536
            + + D FP I+ Y QILT MAR + +GVLHS+IT+++A+   AG LV +LE CGQ VP+
Sbjct: 481 TVLLPDFFPSIEIYTQILTSMARESAHGVLHSYITEKDAASYQAGPLVNVLENCGQNVPD 496

[Close]

BLAST of Spg039801 vs. TAIR 10
Match: AT2G47330.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 84.3 bits (207), Expect = 3.2e-16
Identity = 96/377 (25.46%), Postives = 169/377 (44.83%), Query Frame = 0


Query: 183 SGKDIVD--TSGLSSTDEKIAWVVSSAADSIARKEKEGLSFSSPYLLFLVPTQEKATQVR 242
           SG+D++    +G   T   +  ++    D    +  EG     P  +   PT+E A Q+ 
Sbjct: 264 SGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEG-----PIGVICAPTRELAHQIF 323

Query: 243 SMCKPL-KALGVHTVSIHPGASLDHQIQGLNS-CEPEFLVSTPERLLELVATKAIDISGV 302
              K   KA G+   +++ G S   Q + L + C  E +V+TP RL++++  KA+ +   
Sbjct: 324 LEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGC--EIVVATPGRLIDMLKMKALTMMRA 383

Query: 303 LLLVVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSDSFSCAHVPVVQDLLGGPIRRLS 362
             LV+D  + +   G+   ++SI   I  +  T++FS +       + +++L  PIR   
Sbjct: 384 SYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTV 443

Query: 363 LDTSVASQSACIIQLINFYISEEEKLSKVIQALDRVNGSQLRPQPLKVLFILGKECNVHE 422
            +  +A++   I Q++N   S+ EKL  +++ L  +           VL    K+  V E
Sbjct: 444 GEVGMANED--ITQVVNVIPSDAEKLPWLLEKLPGMIDEG------DVLVFASKKATVDE 503

Query: 423 LAAALKSK--------GHDTVAGALCGVPEFKNNSEVGSRLTPLVAK-IDIEQVNTVDLE 482
           + A L           G    A  +  + +FK+        T + A+ +DI+ + TV   
Sbjct: 504 IEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTV--V 563

Query: 483 NYECIFILDAFPPIDKYVQIL--TGMARHTVNGVLHSFITKEEASVAGSLVEILEQCGQA 542
           NY      D    +D +V  +  TG A    +GV ++ +T+ EA  AG LV  L   GQ 
Sbjct: 564 NY------DIAKDMDMHVHRIGRTGRAGDR-DGVAYTLVTQREARFAGELVNSLVAAGQN 616

Query: 543 VPETVRNLCLTQGTSQS 545
           VP  + +L +  G  +S
Sbjct: 624 VPPELTDLAMKDGRFKS 616

[Close]

BLAST of Spg039801 vs. TAIR 10
Match: AT5G63120.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 4.6e-15
Identity = 81/369 (21.95%), Postives = 168/369 (45.53%), Query Frame = 0


Query: 178 WKCYSSGKDIVDTSGLSSTDE-KIAWVVSSAADSIARKEKEGLSFSSPYLLFLVPTQEKA 237
           W     G+D++   G++ T   K    +  A   ++ + + G     P +L L PT+E A
Sbjct: 196 WPMALKGRDLI---GIAETGSGKTLAYLLPALVHVSAQPRLGQD-DGPIVLILAPTRELA 255

Query: 238 TQVRSMCKPL-KALGVHTVSIHPGASLDHQIQGLNSCEPEFLVSTPERLLELVATKAIDI 297
            Q++   +      GV +  I+ GA    QI+ L     E +++TP RL++++  +  ++
Sbjct: 256 VQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRR-GVEIVIATPGRLIDMLECQHTNL 315

Query: 298 SGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNPHTIVFSDSFSCAHVPVVQDLLGGPIR 357
             V  LV+D  + +   G+   I+ I   I  +  T+++S ++      + +  L  P +
Sbjct: 316 KRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYK 375

Query: 358 RLSLDTSVASQSACIIQLINFYISEEEKLSKVIQALDR-VNGSQLRPQPLKVLFILGKEC 417
            +   T + +  + I Q+I   +   EK ++++  L + ++GS       K+L  +  + 
Sbjct: 376 AIIGSTDLKANQS-INQVIEI-VPTPEKYNRLLTLLKQLMDGS-------KILIFVETKR 435

Query: 418 NVHELAAALKSKGHDTVA--GALCGVPEFKNNSEVGSRLTPLVAKIDIEQVNTVDLENYE 477
              ++   L+  G   +A  G        +  +E  S  +P++   D+     +D+++ +
Sbjct: 436 GCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDV-AARGLDVKDIK 495

Query: 478 CIFILDAFPPIDKYVQILTGMARHTVNGVLHSFITKEEASVAGSLVEILEQCGQAVPETV 537
           C+   D    ++ Y+  +    R    G+  +F T + A  A  LV+IL++ GQ VP T+
Sbjct: 496 CVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTL 549

Query: 538 RNLCLTQGT 542
             L  + G+
Sbjct: 556 SALVRSSGS 549

[Close]

BLAST of Spg039801 vs. TAIR 10
Match: AT1G31970.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-12
Identity = 110/502 (21.91%), Postives = 212/502 (42.23%), Query Frame = 0


Query: 42  KKRRKSGKRRKCQGMCFSLPTPEDPYNDRNG-NKDLNKKETKAVPSKGSKREFPKEKSTS 101
           KK++KS K +  +    +    E P    NG  ++L+ KE K    K  ++E  K K   
Sbjct: 24  KKKKKSKKNKHTEE---NHEVEEVPQEVTNGVEEELSNKEKKK-KRKREEKESEKNKKKD 83

Query: 102 APNGHIAKR--SKTDHERTKVHANGKGGVQSFQDVGSESSLSPSKFLMLCL----NAIEN 161
            P   +      + + E+ KV   GKG             +  +K+  L      N  EN
Sbjct: 84  VPEKKLEAEDLGEGESEQQKVVVTGKG-------------VEEAKYAALKTFAESNLPEN 143

Query: 162 ALCHDSIKRNGKPLFADTWGIEFWKCYSSGKDIVDTSGLSSTDEKIAWVVSSAADSIARK 221
            L          P+ + TW          G+D++  +   S  + +A+ + +    + + 
Sbjct: 144 VLDCCKTFEKPSPIQSHTWPF-----LLDGRDLIGIAKTGS-GKTLAFGIPAIMHVLKKN 203

Query: 222 EK--EGLSFSSPYLLFLVPTQEKATQVRSMCKPL-KALGVHTVSIHPGASLDHQIQGLNS 281
           +K   G    +P  L L PT+E A Q+  + +   +  G+ ++ ++ G+S   QI  + S
Sbjct: 204 KKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRS 263

Query: 282 CEPEFLVSTPERLLELVATKAIDISGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNPHT 341
              + ++ TP RL +L+ +  + +S V  +V+D  + +   G+ + ++ I  + +     
Sbjct: 264 -GVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQM 323

Query: 342 IVFSDSFSCAHVPVVQDLLG-GPIRRLSLDTSVASQSACIIQLINFYISEEEKLSKVIQA 401
           ++FS ++      + Q+ +   PI+ +     +A+    ++Q+I   + E  +  ++I  
Sbjct: 324 VMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHD-VMQIIE-VLDERARDQRLIAL 383

Query: 402 LDRVNGSQLRPQPLKVLFILGKECNVHELAAALKSKGHDTVA--GALCGVPEFKNNSEVG 461
           L++ + SQ      +VL     +     L   L+ +G   V+  G        ++ S   
Sbjct: 384 LEKYHKSQKN----RVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFK 443

Query: 462 SRLTPLVAKIDIEQVNTVDLENYECIFILDAFP-PIDKYVQILTGMARHTVNGVLHSFIT 521
               PL+   D+     +D+ + E + I   FP   + YV  +    R    GV H+F T
Sbjct: 444 EGSCPLLVATDV-AARGLDIPDVE-VVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFT 493

Query: 522 KEEASVAGSLVEILEQCGQAVP 530
                +AG LV +L + GQ VP
Sbjct: 504 PLNKGLAGELVNVLREAGQVVP 493

[Close]

BLAST of Spg039801 vs. TAIR 10
Match: AT3G58510.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 71.6 bits (174), Expect = 2.2e-12
Identity = 79/328 (24.09%), Postives = 137/328 (41.77%), Query Frame = 0


Query: 224 PYLLFLVPTQEKATQVRSMCKPLK-ALGVHTVSIHPGASLDHQIQGL-NSCEPEFLVSTP 283
           P+ + L PT+E A Q+    K      GV  V  + G  +  Q++ L   C  + LV+TP
Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGC--DILVATP 289

Query: 284 ERLLELVATKAIDISGVLLLVVDGLESLSRGGYLDMIQSIRKSISSNP----HTIVFSDS 343
            RL +L+    + +  +  L +D  + +   G+   I+ I + +   P     T++FS +
Sbjct: 290 GRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSAT 349

Query: 344 FSCAHVPVVQDLLGGPIRRLSLDTSVASQSACIIQLINFYISEEEKLSKVIQALDRVNGS 403
           F      +  D +   I        V S +  I Q + F + E +K S ++  L     +
Sbjct: 350 FPSQIQRLAADFMSNYI--FLAVGRVGSSTDLITQRVEF-VQESDKRSHLMDLLHAQRET 409

Query: 404 QLRPQPLKVLFILGKECNVHELAAALKSKGHDTVAGALCGVPEFKNNSEVGSRL------ 463
           Q + Q L ++F+  K             +G DT+   LC + EF   S  G R       
Sbjct: 410 QDK-QSLTLVFVETK-------------RGADTLENWLC-MNEFPATSIHGDRTQQEREV 469

Query: 464 ---------TPLVAKIDIEQVNTVDLENYECIFILDAFPPIDKYVQILTGMARHTVNGVL 523
                    TP++   D+     +D+ +   +   D    ID YV  +    R   +G+ 
Sbjct: 470 ALRSFKTGRTPILVATDV-AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIA 529

Query: 524 HSFITKEEASVAGSLVEILEQCGQAVPE 531
            +F  +  A +A SL E++++  Q VPE
Sbjct: 530 TAFFNENNAQLARSLAELMQEANQEVPE 536

The following BLAST results are available for this feature:

BLAST of Spg039801 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134505.1	3.2e-260	84.39	pre-mRNA-processing ATP-dependent RNA helicase prp5 [Momordica charantia]	[more]
XP_038886801.1	3.7e-256	84.10	ATP-dependent RNA helicase DBP3 [Benincasa hispida]	[more]
XP_022938928.1	3.0e-250	82.01	ATP-dependent RNA helicase DDX42 [Cucurbita moschata]	[more]
XP_022993206.1	1.1e-249	81.66	ATP-dependent RNA helicase DDX42 [Cucurbita maxima]	[more]
XP_023550872.1	1.8e-247	81.46	ATP-dependent RNA helicase DDX42 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg039801 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7ZY47	3.9e-19	25.91	ATP-dependent RNA helicase DDX42 OS=Xenopus laevis OX=8355 GN=ddx42 PE=2 SV=1	[more]
Q5F485	8.8e-19	24.58	ATP-dependent RNA helicase DDX42 OS=Gallus gallus OX=9031 GN=DDX42 PE=2 SV=1	[more]
Q810A7	1.1e-18	24.72	ATP-dependent RNA helicase DDX42 OS=Mus musculus OX=10090 GN=Ddx42 PE=1 SV=3	[more]
Q86XP3	2.6e-18	24.72	ATP-dependent RNA helicase DDX42 OS=Homo sapiens OX=9606 GN=DDX42 PE=1 SV=1	[more]
Q5R7D1	6.3e-17	24.44	ATP-dependent RNA helicase DDX42 OS=Pongo abelii OX=9601 GN=DDX42 PE=2 SV=1	[more]

BLAST of Spg039801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYG8	1.6e-260	84.39	pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Momordica charantia OX=36...	[more]
A0A6J1FKA1	1.5e-250	82.01	ATP-dependent RNA helicase DDX42 OS=Cucurbita moschata OX=3662 GN=LOC111444991 P...	[more]
A0A6J1JVP3	5.5e-250	81.66	ATP-dependent RNA helicase DDX42 OS=Cucurbita maxima OX=3661 GN=LOC111489296 PE=...	[more]
A0A0A0LQJ4	1.8e-245	79.75	DEAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G386150 PE=4 S...	[more]
A0A5D3CIJ6	1.2e-244	79.93	Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Cucumis melo var. makuwa ...	[more]

BLAST of Spg039801 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28600.1	1.0e-126	47.71	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G47330.1	3.2e-16	25.46	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT5G63120.2	4.6e-15	21.95	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G31970.1	1.3e-12	21.91	DEA(D/H)-box RNA helicase family protein	[more]
AT3G58510.1	2.2e-12	24.09	DEA(D/H)-box RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 215..360 e-value: 1.2E-19 score: 72.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 220..354
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 208..335 e-value: 2.5E-12 score: 46.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..116
None	No IPR available	PANTHER	PTHR47958:SF8	ATP-DEPENDENT RNA HELICASE DBP3 ISOFORM X1	coord: 1..533
None	No IPR available	PANTHER	PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	coord: 1..533

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg039801.1	Spg039801.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034220	ion transmembrane transport
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0015276	ligand-gated ion channel activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0038023	signaling receptor activity
molecular_function	GO:0003676	nucleic acid binding