Spg039709 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg039709
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L10-like
Locationscaffold10: 45409236 .. 45411796 (+)
RNA-Seq ExpressionSpg039709
SyntenySpg039709
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTGGTATTCACTAATTGCTACGGTCGGTCTTCTTTGGGCCTTTTCCAAAATGGCGGTTTGGTCCTTCGTTCTATTCCCCTATATATTATAAATTAGGGTTTGTGCACAGGGACGAGCCGACGAGGTCAAGTTCGAGCAGAGAGGGTCTAAAGGAACGTACGCGCGAGATGGGGAGAAGTACGTAAATCTTTTAGTTTCTCCTTCGTGTTTCTCTCCGTTGAATAATCTACTTGTCGTTCGGAATTTTTGTTTTTCTCATCTTCAATGCTAGATGCAACATCTTCGCGTTTTTTTCGATGCAATACGAGAATAAAATTAGCTTATCAGGAAAATTACAGTCTATCGGCGACGAACGCTGTTTTAACCTCGACACATAACTGAACTGTTGGAAATGGATGGTTTCCGCTTGTTGCCGTTGGAAGATGTTGTGTTTGAGCCTTTTATGAGCTTATTCTTTAATAAATTGGTCTTGGTATTTGTACTCTGTTCTAAACTTGCAATATTAAAGAACTTTACGATGTTTTTTAGCAGAAGGGCGAACTAGCGTTGATGTTCATTCAATTTTTAAGATGAATCCATTCAATCTCGCATATCAAATTAATTAATTATGGTCTAGCCTTACCATCTATGTAAGACAGACCCTAAAGTAGTTAAACCTTGCACCCTTATGTGTTTTCGCATTATACTATGCACGGACTGGGGATTTTCTTTGCATATGAAGGAGGAATATTGTTACTGTTTTGTTTTAATCGCTCCTTAGTTGCAAGTGCTTATTATTTAACAGAATGCATTTGCTAGCTGGAAAATGTTTGGTGTTGATTGTTAGAATATGTAAGTTTAGAAAATAGATGTATTGCGTAGCAACGCTCGTGCTTTTTTGAGTTGATGGTCTACCTCAACGTGTACGCGAACATTATTATTTATCTTGATGCTCTTGGACGAATGGTTAGTAGTCAAAGTCCTGAATAATTTTCGTTGTTGACTCATTTTGACTATAATTTGATCTTGATAATTCTATGCTGGCTCTACTTTACGTACAATATTGTCGCTTGTTATTCATTACCTTGCATTGTTTTTTGTAGGACCCGCTAGGTGTTACCGGCAAATTAAAAATAAGCCTTATCCAAAATCAAGATTCTGTCGTGGTGTCCCTGATCCTAAGATCAGGATCTATGATGTTGGAATGAAAAAGAAGGGTGTGGATGAATTCCCATTTTGTGTTCACCTAGTGAGTTGGGAGAAAGAAAACGTGTCTAGTGAGGCTCTGGAAGCTGCTAGGATTGCCTGCAATAAGTATATGGCCAAGTTTGCTGGAAAGGATGCATTCCACTTGAGGGTCAGGGTGCATCCCTTCCATGTTCTGCGAATTAACAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAGACTGGTATGAGAGGTGCTTTCGGTAAACCACAAGGAACCTGTGCAAGAGTGGACATTGGTCAGGTTCTTCTTTCAGTTCGCTGCAAGGATAACAACAGCCAGCATGCACAGGAGGCCCTCCGCCGTGCTAAGTTCAAATTCCCTGGTCGTCAGAAGATCATTGTCAGCAGGAAGTGGTATGCCTTGAAAGAATTTTTGCATTTTTTTCCCTTCCTCTTGTGACTTAAAAGATCTTGTCGCATTGATTGAATGATAATTGTTTCAAATTTCCTTTTCCAGGGGATTCACTAAATTCAGTCGGGCTGATTATCTGGCTTACAAGGCAGAGAACAAAATTCTTCCAGATGGTGTAAACGCCAAGGTAAGTTATATTGCATTCAACCATATGCTTGCTTTATTGTTGTTTTATATTCGAACGTTGTGATAATTTTTTCATTTGTAAGCACAAGAACGGATGTTGGATTAGCTATAACTACAAAATGCTACTTATCCTTTTCTATAAAATGAATTTATTGCATTAAACCAAAGAGATAATTGAAAGAGCATCTGAACAACATTGATATTCGTCGAAGTGCGTTCGATCAAGAGGTTTGAATCCTGTTTTTGAACTAAAAAAAAGAACAACATTGATATTCTCTGGATGCTATAATAGATGTTTCTCGTAGCATTTGATACCATATTTTTTGCTTCATCATCACTGATAAAGCATAATTACGCGATCAATTTGATTACTTCTATCACTTACATGGAGTTGCATTGTTTTATTACATTCTATTTGTTAACTGATCGATCCGCAATTGGACTTCGCAGCTTCTTGGATGCCATGGACCTTTAGCAAATCGTCAACCTGGAAGAGCTTTTCTACCTCAAACTGCCTAAGTTCAGCTAGTTATTTCGCTTTGTCTTTGCTGTCTCTTTTCGTTTTTGACAGTTGAACGAGTCTATTTTATTATATATTTTGTCTGTATCAACTTATTATTCCGGCAGTTTCATTGCTTAAGAATGTTGGAGATACATAGGATCTGGGATTTTAAGGGGGAACAAAATGACTTTGATCATTTATTTTATTTTTTTTCCCTTAATTCTCCCCCCTAATTTGAACTTAATTCTGCTAAACCAAACCATCCAAATTAAAAATTGCTTCTACC

mRNA sequence

ATGCAGTGGTATTCACTAATTGCTACGGGACGAGCCGACGAGGTCAAGTTCGAGCAGAGAGGGTCTAAAGGAACGTACGCGCGAGATGGGGAGAAGGTGCATCCCTTCCATGTTCTGCGAATTAACAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAGACTGGTATGAGAGGTGCTTTCGGTAAACCACAAGGAACCTGTGCAAGAGTGGACATTGGTCAGGTTCTTCTTTCAGTTCGCTGCAAGGATAACAACAGCCAGCATGCACAGGAGGCCCTCCGCCGTGCTAAGTTCAAATTCCCTGGTCGTCAGAAGATCATTGTCAGCAGGAAGTGGGGATTCACTAAATTCAGTCGGGCTGATTATCTGGCTTACAAGGCAGAGAACAAAATTCTTCCAGATGGTGTAAACGCCAAGGTAACTTCTTGGATGCCATGGACCTTTAGCAAATCGTCAACCTGGAAGAGCTTTTCTACCTCAAACTGCCTAAGTTCAGCTAGTTATTTCGCTTTGTCTTTGCTGTCTCTTTTCGTTTTTGACAGTTGA

Coding sequence (CDS)

ATGCAGTGGTATTCACTAATTGCTACGGGACGAGCCGACGAGGTCAAGTTCGAGCAGAGAGGGTCTAAAGGAACGTACGCGCGAGATGGGGAGAAGGTGCATCCCTTCCATGTTCTGCGAATTAACAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAGACTGGTATGAGAGGTGCTTTCGGTAAACCACAAGGAACCTGTGCAAGAGTGGACATTGGTCAGGTTCTTCTTTCAGTTCGCTGCAAGGATAACAACAGCCAGCATGCACAGGAGGCCCTCCGCCGTGCTAAGTTCAAATTCCCTGGTCGTCAGAAGATCATTGTCAGCAGGAAGTGGGGATTCACTAAATTCAGTCGGGCTGATTATCTGGCTTACAAGGCAGAGAACAAAATTCTTCCAGATGGTGTAAACGCCAAGGTAACTTCTTGGATGCCATGGACCTTTAGCAAATCGTCAACCTGGAAGAGCTTTTCTACCTCAAACTGCCTAAGTTCAGCTAGTTATTTCGCTTTGTCTTTGCTGTCTCTTTTCGTTTTTGACAGTTGA

Protein sequence

MQWYSLIATGRADEVKFEQRGSKGTYARDGEKVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKVTSWMPWTFSKSSTWKSFSTSNCLSSASYFALSLLSLFVFDS
Homology
[Close]
BLAST of Spg039709 vs. NCBI nr
Match: KCW50319.1 (hypothetical protein EUGRSUZ_J00099 [Eucalyptus grandis])

HSP 1 Score: 247.7 bits (631), Expect = 7.9e-62
Identity = 117/133 (87.97%), Postives = 123/133 (92.48%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+NS HAQ
Sbjct: 160 RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQ 219

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKVTSWMPWTFSK 151
           EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYL +K+ENKI+PDGVNAKVT WMPWT  +
Sbjct: 220 EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKWKSENKIVPDGVNAKVTPWMPWTSGE 279

Query: 152 SSTWKSFSTSNCL 165
            STWKSF   NCL
Sbjct: 280 PSTWKSFLAYNCL 292

[Close]
BLAST of Spg039709 vs. NCBI nr
Match: KAF7121006.1 (hypothetical protein RHSIM_Rhsim13G0057500 [Rhododendron simsii])

HSP 1 Score: 236.5 bits (602), Expect = 1.8e-58
Identity = 114/133 (85.71%), Postives = 121/133 (90.98%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD NSQHAQ
Sbjct: 90  RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDTNSQHAQ 149

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKVTSWMPWTFSK 151
           EALRRAKFKFPGRQKIIVSRKWGFTK+SR+DYL +KAEN+IL DGVNAKVTS +PWT S 
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKYSRSDYLRWKAENRILSDGVNAKVTSGLPWTLSG 209

Query: 152 SSTWKSFSTSNCL 165
           +STWKS     CL
Sbjct: 210 ASTWKSVYRCCCL 222

[Close]
BLAST of Spg039709 vs. NCBI nr
Match: XP_004141510.1 (60S ribosomal protein L10 [Cucumis sativus] >KAE8648968.1 hypothetical protein Csa_009152 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-54
Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+NSQHAQ
Sbjct: 90  RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQ 149

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKV 142
           EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAK+
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKL 199

[Close]
BLAST of Spg039709 vs. NCBI nr
Match: XP_008459481.1 (PREDICTED: 60S ribosomal protein L10-like [Cucumis melo])

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-54
Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+NSQHAQ
Sbjct: 115 RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQ 174

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKV 142
           EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAK+
Sbjct: 175 EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKL 224

[Close]
BLAST of Spg039709 vs. NCBI nr
Match: XP_038891235.1 (60S ribosomal protein L10-like [Benincasa hispida])

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-54
Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+NSQHAQ
Sbjct: 90  RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQ 149

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKV 142
           EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAK+
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKL 199

[Close]
BLAST of Spg039709 vs. ExPASy Swiss-Prot
Match: P93847 (60S ribosomal protein L10 OS=Solanum melongena OX=4111 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 8.2e-54
Identity = 99/110 (90.00%), Postives = 104/110 (94.55%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARV IGQVLLSVRCKD NS HAQ
Sbjct: 90  RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQ 149

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKV 142
           EALRRAKFKFPGRQKIIVSRKWGFTKFSR DYL YK+EN+I+PDGVNAK+
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKL 199

[Close]
BLAST of Spg039709 vs. ExPASy Swiss-Prot
Match: P45633 (60S ribosomal protein L10 OS=Zea mays OX=4577 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.4e-53
Identity = 98/110 (89.09%), Postives = 104/110 (94.55%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNN+ HA 
Sbjct: 90  RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNAAHAS 149

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKV 142
           EALRRAKFKFP RQKII SRKWGFTKFSRADYL YK+E +I+PDGVNAK+
Sbjct: 150 EALRRAKFKFPARQKIIESRKWGFTKFSRADYLKYKSEGRIVPDGVNAKL 199

[Close]
BLAST of Spg039709 vs. ExPASy Swiss-Prot
Match: Q9SPB3 (60S ribosomal protein L10 OS=Vitis riparia OX=96939 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.1e-53
Identity = 96/110 (87.27%), Postives = 104/110 (94.55%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD NS HAQ
Sbjct: 90  RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNSHHAQ 149

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKV 142
           EALRRAKFKFP RQKIIVSRKWGFTKF+R DY+ +K++N+ILPDGVNAK+
Sbjct: 150 EALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKL 199

[Close]
BLAST of Spg039709 vs. ExPASy Swiss-Prot
Match: Q40592 (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.5e-52
Identity = 97/110 (88.18%), Postives = 103/110 (93.64%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARV IGQVLLSVRCKD N+ HAQ
Sbjct: 19  RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNANHAQ 78

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKV 142
           EALRRAKFKFP RQKIIVSRKWGFTKFSR DYL YK+EN+I+PDGVNAK+
Sbjct: 79  EALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKL 128

[Close]
BLAST of Spg039709 vs. ExPASy Swiss-Prot
Match: Q9M5M7 (60S ribosomal protein L10 OS=Euphorbia esula OX=3993 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-51
Identity = 97/110 (88.18%), Postives = 103/110 (93.64%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARV IGQVLLSVRCKDNNS +AQ
Sbjct: 90  RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDNNSHNAQ 149

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKV 142
           EALRRAKFKFPGRQKIIVSRKWGFTK +RADY   K+EN+ILPDGVNAK+
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKL 199

[Close]
BLAST of Spg039709 vs. ExPASy TrEMBL
Match: A0A059A9A7 (Ribosomal_L16 domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_J00099 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.8e-62
Identity = 117/133 (87.97%), Postives = 123/133 (92.48%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+NS HAQ
Sbjct: 160 RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQ 219

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKVTSWMPWTFSK 151
           EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYL +K+ENKI+PDGVNAKVT WMPWT  +
Sbjct: 220 EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKWKSENKIVPDGVNAKVTPWMPWTSGE 279

Query: 152 SSTWKSFSTSNCL 165
            STWKSF   NCL
Sbjct: 280 PSTWKSFLAYNCL 292

[Close]
BLAST of Spg039709 vs. ExPASy TrEMBL
Match: A0A0A0KVY2 (Ribosomal_L16 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G645120 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.3e-54
Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+NSQHAQ
Sbjct: 15  RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQ 74

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKV 142
           EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAK+
Sbjct: 75  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKL 124

[Close]
BLAST of Spg039709 vs. ExPASy TrEMBL
Match: A0A1S3CAD5 (60S ribosomal protein L10-like OS=Cucumis melo OX=3656 GN=LOC103498603 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.3e-54
Identity = 106/110 (96.36%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV IGQVLLSVRCKD+NSQHAQ
Sbjct: 115 RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQ 174

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKV 142
           EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAK+
Sbjct: 175 EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKL 224

[Close]
BLAST of Spg039709 vs. ExPASy TrEMBL
Match: A0A6J1L4H1 (60S ribosomal protein L10-like OS=Cucurbita maxima OX=3661 GN=LOC111499807 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.7e-54
Identity = 104/110 (94.55%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ
Sbjct: 90  RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 149

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKV 142
           EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYL +K+ENKI+PDGVNAK+
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKL 199

[Close]
BLAST of Spg039709 vs. ExPASy TrEMBL
Match: A0A6J1G6Y3 (60S ribosomal protein L10-like OS=Cucurbita moschata OX=3662 GN=LOC111451338 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.7e-54
Identity = 104/110 (94.55%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ
Sbjct: 90  RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 149

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKV 142
           EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYL +K+ENKI+PDGVNAK+
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKL 199

[Close]
BLAST of Spg039709 vs. TAIR 10
Match: AT1G26910.1 (Ribosomal protein L16p/L10e family protein )

HSP 1 Score: 194.5 bits (493), Expect = 7.4e-50
Identity = 93/112 (83.04%), Postives = 99/112 (88.39%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARV IGQVLLSVRCKD +  HAQ
Sbjct: 90  RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQ 149

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKVTS 144
           EALRRAKFKFPGRQKIIVSRKWGFTKF+RADY   + E +I+PDGVNAK  S
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLS 201

[Close]
BLAST of Spg039709 vs. TAIR 10
Match: AT1G66580.1 (senescence associated gene 24 )

HSP 1 Score: 194.5 bits (493), Expect = 7.4e-50
Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARV IGQVLLSVRCKDN+  HAQ
Sbjct: 90  RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQ 149

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKVTS 144
           EALRRAKFKFPGRQKIIVSRKWGFTKF+RA+Y   +A  +I+PDGVNAK  S
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLS 201

[Close]
BLAST of Spg039709 vs. TAIR 10
Match: AT1G14320.1 (Ribosomal protein L16p/L10e family protein )

HSP 1 Score: 192.6 bits (488), Expect = 2.8e-49
Identity = 91/112 (81.25%), Postives = 99/112 (88.39%), Query Frame = 0 

Query: 32  KVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNSQHAQ 91
           +VHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARV IGQVLLSVRCKD +  HAQ
Sbjct: 90  RVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQ 149

Query: 92  EALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGVNAKVTS 144
           EALRRAKFKFPGRQKIIVSRKWGFTKF+RAD+   + E +++PDGVNAK  S
Sbjct: 150 EALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLS 201

[Close]
BLAST of Spg039709 vs. TAIR 10
Match: AT1G14320.2 (Ribosomal protein L16p/L10e family protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-24
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0 

Query: 76  VLLSVRCKDNNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPD 135
           VLLSVRCKD +  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD+   + E +++PD
Sbjct: 77  VLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPD 136

Query: 136 GVNAKVTS 144
           GVNAK  S
Sbjct: 137 GVNAKFLS 144

The following BLAST results are available for this feature:
BLAST of Spg039709 vs. NCBI nr
Match NameE-valueIdentityDescription
KCW50319.17.9e-6287.97hypothetical protein EUGRSUZ_J00099 [Eucalyptus grandis][more]
KAF7121006.11.8e-5885.71hypothetical protein RHSIM_Rhsim13G0057500 [Rhododendron simsii][more]
XP_004141510.12.7e-5496.3660S ribosomal protein L10 [Cucumis sativus] >KAE8648968.1 hypothetical protein C... [more]
XP_008459481.12.7e-5496.36PREDICTED: 60S ribosomal protein L10-like [Cucumis melo][more]
XP_038891235.12.7e-5496.3660S ribosomal protein L10-like [Benincasa hispida][more]
BLAST of Spg039709 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P938478.2e-5490.0060S ribosomal protein L10 OS=Solanum melongena OX=4111 GN=RPL10 PE=2 SV=1[more]
P456332.4e-5389.0960S ribosomal protein L10 OS=Zea mays OX=4577 GN=RPL10 PE=2 SV=1[more]
Q9SPB39.1e-5387.2760S ribosomal protein L10 OS=Vitis riparia OX=96939 GN=RPL10 PE=2 SV=1[more]
Q405921.5e-5288.1860S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPL10 PE=2 ... [more]
Q9M5M71.0e-5188.1860S ribosomal protein L10 OS=Euphorbia esula OX=3993 GN=RPL10 PE=2 SV=1[more]
BLAST of Spg039709 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A059A9A73.8e-6287.97Ribosomal_L16 domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSU... [more]
A0A0A0KVY21.3e-5496.36Ribosomal_L16 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G6451... [more]
A0A1S3CAD51.3e-5496.3660S ribosomal protein L10-like OS=Cucumis melo OX=3656 GN=LOC103498603 PE=3 SV=1[more]
A0A6J1L4H11.7e-5494.5560S ribosomal protein L10-like OS=Cucurbita maxima OX=3661 GN=LOC111499807 PE=3 ... [more]
A0A6J1G6Y31.7e-5494.5560S ribosomal protein L10-like OS=Cucurbita moschata OX=3662 GN=LOC111451338 PE=... [more]
BLAST of Spg039709 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G26910.17.4e-5083.04Ribosomal protein L16p/L10e family protein [more]
AT1G66580.17.4e-5083.04senescence associated gene 24 [more]
AT1G14320.12.8e-4981.25Ribosomal protein L16p/L10e family protein [more]
AT1G14320.21.8e-2475.00Ribosomal protein L16p/L10e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3D3.90.1170.10Ribosomal protein L10e/L16coord: 22..119
e-value: 6.9E-52
score: 177.3
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 32..118
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 32..108
e-value: 7.3E-18
score: 64.9
IPR016180Ribosomal protein L10e/L16CDDcd01433Ribosomal_L16_L10ecoord: 32..108
e-value: 4.60643E-27
score: 96.7919
NoneNo IPR availableGENE3D3.30.60.300coord: 120..145
e-value: 1.7E-7
score: 32.5
NoneNo IPR availablePANTHERPTHR11726:SF4260S RIBOSOMAL PROTEIN L10-LIKEcoord: 32..142
IPR001197Ribosomal protein L10ePANTHERPTHR1172660S RIBOSOMAL PROTEIN L10coord: 32..142
IPR018255Ribosomal protein L10e, conserved sitePROSITEPS01257RIBOSOMAL_L10Ecoord: 50..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg039709.1Spg039709.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome