Spg039537 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg039537
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Heat shock a protein 1/8
Location	scaffold10: 42784521 .. 42785572 (-)
RNA-Seq Expression	Spg039537
Synteny	Spg039537

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCAGAAATTCGGCGGTGGGTTGCGCCCCACTGGAACTCCCTCAGTGGGTTGGTCATTTGTCGTCGTCGTCTCTTCGCTTCTCGCCGGCGCCTCCATCGTTCACAACATCTACAAACCAAATCTTGTACTCTCTCTCTCTCTCTTCCTCTGTTATGTGTTTATATACGTCGAGTGACTCTTTGATGATTATTCGTAGTTGGAAATATGGTCATGTGTGTGCAGATTGCTGGGTGCAATTTAACTTGATAATGCCTGTAACCTGTTTGATGAAAGGTCCACCATGTAGTTTATGCTCATTATCTTCTTAGTTGAGTATAAGCCTGCCATTACCTGTTGCTGATCAATGGAATTCAGAAAAGTTGTCCACCTGTGCTCTTGAAATCAAATCGATTTCAGCTTCTTCTTCTTTCTTTTTTTTCAGAAATATCTAAGGATCACCGAACCATATTCTGTTTCGTGCTTTTCTTTTATTAGCTTTTCATATAAAGTTTATAAATTTGTTCTGTTCATACATTTTTGCAATCGTATTGCTTCATCCATTTCTCTTGTTTCACTAAAAAGTCCTATATCTTGAATGGTCTCTGAATTACTAACTTTTTCCCTTTTTAATGGCTTTGTAGACCCTGCCTCCGGTGGAGAGCGTCCAAACGACCAACAAGAAAGACCCTAATTAACAGTTAATTAGTTCCTTTGGCGTATAGTTAGTTTATTTCTTTCCAGATACATGTTTTTCTTATCGTTGAGCCAAATTGTTTTTTCACATGCTTTGATGTGAGAGTTCTATATTTATTGTTGGGAAAGGAACAAATTAATCTTTGAAGATTCATCTCGAGAGCTTTAAGTGTTATAAAATTCACTAGTTATAACTAGTGCTTCTCTCTTTTGTTATAATGAAATGATTATCTTTATATTTATGCCAAATGGAGTAGCTTTTTGTAATCTCCTCTTGCAGCCGAGGGCTTGTCATTTTATACTTGGCGTGCTTGAATGAGAAGTTGTTTTGTGTTCCCTTCCTCTCGAAAGGGGTGAGAGTTCACTATGAGTCCC

mRNA sequence

ATGACTCAGAAATTCGGCGGTGGGTTGCGCCCCACTGGAACTCCCTCAGTGGGTTGGTCATTTGTCGTCGTCGTCTCTTCGCTTCTCGCCGGCGCCTCCATCGTTCACAACATCTACAAACCAAATCTTGTACTCTCTCTCTCTCTCTTCCTCTGTTATACCCTGCCTCCGGTGGAGAGCGTCCAAACGACCAACAAGAAAGACCCTAATTAA

Coding sequence (CDS)

ATGACTCAGAAATTCGGCGGTGGGTTGCGCCCCACTGGAACTCCCTCAGTGGGTTGGTCATTTGTCGTCGTCGTCTCTTCGCTTCTCGCCGGCGCCTCCATCGTTCACAACATCTACAAACCAAATCTTGTACTCTCTCTCTCTCTCTTCCTCTGTTATACCCTGCCTCCGGTGGAGAGCGTCCAAACGACCAACAAGAAAGACCCTAATTAA

Protein sequence

MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLVLSLSLFLCYTLPPVESVQTTNKKDPN

Homology

[Close]

BLAST of Spg039537 vs. NCBI nr
Match: KAA0037665.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYK22809.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 3.7e-20
Identity = 55/69 (79.71%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLVLSLSLFLCYTLPPVES 60
          MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVH+IYKPNL          TLPP +S
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL----------TLPPADS 59

Query: 61 VQTTNKKDP 70
           QTTNKKDP
Sbjct: 61 AQTTNKKDP 59

[Close]

BLAST of Spg039537 vs. NCBI nr
Match: KAG7016236.1 (hypothetical protein SDJN02_21342, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.2 bits (256), Expect = 9.2e-19
Identity = 53/68 (77.94%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLVLSLSLFLCYTLPPVES 60
          M +KFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNL          TLPPV+S
Sbjct: 1  MARKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNL----------TLPPVDS 58

Query: 61 VQTTNKKD 69
          VQ T+KKD
Sbjct: 61 VQATSKKD 58

[Close]

BLAST of Spg039537 vs. NCBI nr
Match: KGN51309.1 (hypothetical protein Csa_009362 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 1.0e-17
Identity = 52/70 (74.29%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLVLSLSLFLCYTLPPVES 60
          MTQKFGGGLRPTGTPSVGWSFVVV+SSLLAGASIVHNI+KPNL          TLPP +S
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNL----------TLPPADS 60

Query: 61 VQ-TTNKKDP 70
           Q TTNK++P
Sbjct: 61 AQTTTNKENP 60

[Close]

BLAST of Spg039537 vs. NCBI nr
Match: XP_030462219.1 (uncharacterized protein LOC115682205 [Syzygium oleosum])

HSP 1 Score: 83.6 bits (205), Expect = 7.6e-13
Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLVLSLSLFLCYTLPPVES 60
           M Q+FGG  +PTGTPS+ WS VVVV+SLLAGAS+VHNIYKP+L          TLPP+ES
Sbjct: 82  MNQRFGGARQPTGTPSLAWSCVVVVASLLAGASVVHNIYKPDL----------TLPPLES 140

Query: 61  VQTTNKKDP 70
           V+   KK P
Sbjct: 142 VEEAKKKQP 140

[Close]

BLAST of Spg039537 vs. NCBI nr
Match: MBA0726309.1 (hypothetical protein [Gossypium laxum] >MBA0750563.1 hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 83.6 bits (205), Expect = 7.6e-13
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLVL-SLSLFLCYTLPPVE 60
          M QKFG   +PTGTPS+ WS VVV++SLLAGAS+VHNIYKP+LV+ SL L    TLPPVE
Sbjct: 1  MNQKFGAAKQPTGTPSLAWSCVVVIASLLAGASVVHNIYKPDLVITSLLLSFLSTLPPVE 60

Query: 61 SVQTTNKK 68
                KK
Sbjct: 61 DADEAKKK 68

[Close]

BLAST of Spg039537 vs. ExPASy TrEMBL
Match: A0A5A7T878 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00480 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 55/69 (79.71%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLVLSLSLFLCYTLPPVES 60
          MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVH+IYKPNL          TLPP +S
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHHIYKPNL----------TLPPADS 59

Query: 61 VQTTNKKDP 70
           QTTNKKDP
Sbjct: 61 AQTTNKKDP 59

[Close]

BLAST of Spg039537 vs. ExPASy TrEMBL
Match: A0A0A0KQX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517080 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.9e-18
Identity = 52/70 (74.29%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLVLSLSLFLCYTLPPVES 60
          MTQKFGGGLRPTGTPSVGWSFVVV+SSLLAGASIVHNI+KPNL          TLPP +S
Sbjct: 1  MTQKFGGGLRPTGTPSVGWSFVVVISSLLAGASIVHNIFKPNL----------TLPPADS 60

Query: 61 VQ-TTNKKDP 70
           Q TTNK++P
Sbjct: 61 AQTTTNKENP 60

[Close]

BLAST of Spg039537 vs. ExPASy TrEMBL
Match: A0A7J9CPY7 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_001972 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.7e-13
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLVL-SLSLFLCYTLPPVE 60
          M QKFG   +PTGTPS+ WS VVV++SLLAGAS+VHNIYKP+LV+ SL L    TLPPVE
Sbjct: 1  MNQKFGAAKQPTGTPSLAWSCVVVIASLLAGASVVHNIYKPDLVITSLLLSFLSTLPPVE 60

Query: 61 SVQTTNKK 68
                KK
Sbjct: 61 DADEAKKK 68

[Close]

BLAST of Spg039537 vs. ExPASy TrEMBL
Match: A0A7J9AS72 (Uncharacterized protein OS=Gossypium laxum OX=34288 GN=Golax_002143 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.7e-13
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLVL-SLSLFLCYTLPPVE 60
          M QKFG   +PTGTPS+ WS VVV++SLLAGAS+VHNIYKP+LV+ SL L    TLPPVE
Sbjct: 1  MNQKFGAAKQPTGTPSLAWSCVVVIASLLAGASVVHNIYKPDLVITSLLLSFLSTLPPVE 60

Query: 61 SVQTTNKK 68
                KK
Sbjct: 61 DADEAKKK 68

[Close]

BLAST of Spg039537 vs. ExPASy TrEMBL
Match: A0A2I0IS49 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_032905 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.8e-13
Identity = 44/68 (64.71%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLVLSLSLFLCYTLPPVES 60
          M +KFGGG  PTGTPS+ WS VVVV SLLAGASIVHNIYKPNL          TLPP+ES
Sbjct: 1  MNRKFGGGRPPTGTPSLAWSSVVVVVSLLAGASIVHNIYKPNL----------TLPPIES 58

Query: 61 VQTTNKKD 69
          V    KK+
Sbjct: 61 VDGDKKKE 58

[Close]

BLAST of Spg039537 vs. TAIR 10
Match: AT4G26055.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 2.3e-12
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 1  MTQKFGGGLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLVLSLSLFLCYTLPPVES 60
          M  KF GG +PTGTPS+ WS VVVV+SLLAGAS+VHNIYKP+L          TLP +E+
Sbjct: 1  MNNKF-GGKKPTGTPSLAWSTVVVVASLLAGASVVHNIYKPDL----------TLPQIEN 57

Query: 61 VQTTNKKD 69
           +   K++
Sbjct: 61 DEGDEKEE 57

[Close]

BLAST of Spg039537 vs. TAIR 10
Match: AT5G57080.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26055.1); Has 14 Blast hits to 14 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 3.7e-10
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 8  GLRPTGTPSVGWSFVVVVSSLLAGASIVHNIYKPNLVLSLSLFLCYTLPPVESVQTTNKK 67
          G  PTGTPS+  S +VVV+SLLAGAS+VHNIYKP+L          +LPP+ES +   K 
Sbjct: 7  GKLPTGTPSLAMSTLVVVASLLAGASVVHNIYKPDL----------SLPPLESSEVAKKD 57

Query: 68 D 69
          D
Sbjct: 67 D 57

The following BLAST results are available for this feature:

BLAST of Spg039537 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037665.1	3.7e-20	79.71	putative transmembrane protein [Cucumis melo var. makuwa] >TYK22809.1 putative t...	[more]
KAG7016236.1	9.2e-19	77.94	hypothetical protein SDJN02_21342, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KGN51309.1	1.0e-17	74.29	hypothetical protein Csa_009362 [Cucumis sativus]	[more]
XP_030462219.1	7.6e-13	60.87	uncharacterized protein LOC115682205 [Syzygium oleosum]	[more]
MBA0726309.1	7.6e-13	63.24	hypothetical protein [Gossypium laxum] >MBA0750563.1 hypothetical protein [Gossy...	[more]

BLAST of Spg039537 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg039537 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T878	1.8e-20	79.71	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0KQX5	4.9e-18	74.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517080 PE=4 SV=1	[more]
A0A7J9CPY7	3.7e-13	63.24	Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_001972 PE=4 ...	[more]
A0A7J9AS72	3.7e-13	63.24	Uncharacterized protein OS=Gossypium laxum OX=34288 GN=Golax_002143 PE=4 SV=1	[more]
A0A2I0IS49	4.8e-13	64.71	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_032905 PE=4 SV=1	[more]

BLAST of Spg039537 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26055.1	2.3e-12	54.41	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G57080.1	3.7e-10	54.10	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027858	Protein BRAWNIN	PFAM	PF14990	DUF4516	coord: 11..44 e-value: 4.4E-13 score: 48.7
IPR027858	Protein BRAWNIN	PANTHER	PTHR28492	HYPOTHETICAL PROTEIN LOC691921	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg039537.1	Spg039537.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034551	mitochondrial respiratory chain complex III assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion