Spg039106 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg039106
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold13: 22561029 .. 22561805 (-)
RNA-Seq Expression	Spg039106
Synteny	Spg039106

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAGAGCGGCCATCGTTTGTTGATTTTCATCAACTGTCGTCACTATACACGCTATATTTTGGGCCGAATGTTCCAAAGAACGTTCCAGATCAGGTATCTTCTGCAACTCCTCTTTTATCTCAATCAACTCCTTTTTTGTCGCATCCAACCTTTTCTGAGCCTTTTTTTTTAATTGTTTCCAAATCTCAATGTGCTCTGATACCAGAATAATAGGCGTTGAATATTACTATATATGTATAATTATGTATAAAAGAGTAAAAGGGGTGAAGATGGTTGATGAATAATTATATTTTCTTAGGTCCTCATAACACAGGTGTGTGTATCCTCTTGCAGGTGGAAATGGAAACCCTGGGAACTCGAAACGGGGACCTGACTTCAGTAGCTTCATTCTAAGGTGGATTTTGGAGATTTCACTGAAAAAAATCTTGGAGGGAATTCAAGACTTTGTGATATTGTTGAAGAATGTTGTTGGTAATCCTGGGAGGGAGAAACTGAAGCCAGAGGAAAAAGTCGAGATGCTCGAAAAAATCAATTCTTCATTTTTTCTGGCTTTGATCATCATGTTGATTGTGGTTGTGGGTCGAGTTCAGATTGCATGAGATCAACATTTTCCACTTTTACTCTTGCTTTTATTTAACCTAAATTGTCAATTCACCAACTTCTACATGTGCTATGGATAATATTTGTACACTCATAATAATGCGTACCAGTACTGTTACTTATCCATGAATGTCAAGTGTGTATGAGTTCTTATTTGTCTGCTAAGTTTTT

mRNA sequence

ATGGGAGAAGAGCGGCCATCGTTTGTTGATTTTCATCAACTGTCGTCACTATACACGCTATATTTTGGGCCGAATGTTCCAAAGAACGTTCCAGATCAGAGTAAAAGGGGTGAAGATGGTGGAAATGGAAACCCTGGGAACTCGAAACGGGGACCTGACTTCAGTAGCTTCATTCTAAGGTGGATTTTGGAGATTTCACTGAAAAAAATCTTGGAGGGAATTCAAGACTTTGTGATATTGTTGAAGAATGTTGTTGGTAATCCTGGGAGGGAGAAACTGAAGCCAGAGGAAAAAGTCGAGATGCTCGAAAAAATCAATTCTTCATTTTTTCTGGCTTTGATCATCATGTTGATTGTGGTTGTGGGTCGAGTTCAGATTGCATGA

Coding sequence (CDS)

ATGGGAGAAGAGCGGCCATCGTTTGTTGATTTTCATCAACTGTCGTCACTATACACGCTATATTTTGGGCCGAATGTTCCAAAGAACGTTCCAGATCAGAGTAAAAGGGGTGAAGATGGTGGAAATGGAAACCCTGGGAACTCGAAACGGGGACCTGACTTCAGTAGCTTCATTCTAAGGTGGATTTTGGAGATTTCACTGAAAAAAATCTTGGAGGGAATTCAAGACTTTGTGATATTGTTGAAGAATGTTGTTGGTAATCCTGGGAGGGAGAAACTGAAGCCAGAGGAAAAAGTCGAGATGCTCGAAAAAATCAATTCTTCATTTTTTCTGGCTTTGATCATCATGTTGATTGTGGTTGTGGGTCGAGTTCAGATTGCATGA

Protein sequence

MGEERPSFVDFHQLSSLYTLYFGPNVPKNVPDQSKRGEDGGNGNPGNSKRGPDFSSFILRWILEISLKKILEGIQDFVILLKNVVGNPGREKLKPEEKVEMLEKINSSFFLALIIMLIVVVGRVQIA

Homology

[Close]

BLAST of Spg039106 vs. NCBI nr
Match: XP_008459730.1 (PREDICTED: uncharacterized protein LOC103498772 [Cucumis melo] >KAA0053454.1 uncharacterized protein E6C27_scaffold46837G00010 [Cucumis melo var. makuwa] >TYK24756.1 uncharacterized protein E5676_scaffold266G003190 [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 7.5e-19
Identity = 57/88 (64.77%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 40  GGNGNPGNSKRGPDFSSFILRWILEISLKKILEGIQDFVILLKNVVGNPGREKLKPEEKV 99
           GGNGN G+SK+GPDF + IL WIL+ISL KI E I++FV LL N    PG+EKLKPE+K 
Sbjct: 140 GGNGNTGSSKQGPDFGNVILSWILQISLTKIRELIENFVSLLNNAFCFPGKEKLKPEKKD 199

Query: 100 EMLEKINSSFFLALIIMLIVVVGRVQIA 128
           E+ EKI SS  L+L++MLIVVV RVQIA
Sbjct: 200 EIDEKIQSSLVLSLVVMLIVVVARVQIA 227

[Close]

BLAST of Spg039106 vs. NCBI nr
Match: XP_022959467.1 (uncharacterized protein LOC111460433 [Cucurbita moschata])

HSP 1 Score: 102.4 bits (254), Expect = 2.9e-18
Identity = 59/95 (62.11%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 33  QSKRGEDGGNGNPGNSKRGPDFSSFILRWILEISLKKILEGIQDFVILLKNVVGNPGREK 92
           Q     +GGNGN G+SKRG D  S IL WIL++SL KI E IQ+FV+LL N    PG+EK
Sbjct: 139 QELPSSEGGNGNLGSSKRGADIGSVILSWILQMSLTKIWELIQNFVVLLNNAFLFPGKEK 198

Query: 93  LKPEEKVEMLEKINSSFFLALIIMLIVVVGRVQIA 128
           LK E++ E+ EKI SSF L+LIIMLIVVV RVQIA
Sbjct: 199 LKAEKREEIDEKIQSSFVLSLIIMLIVVVSRVQIA 233

[Close]

BLAST of Spg039106 vs. NCBI nr
Match: XP_038875839.1 (uncharacterized protein LOC120068201 [Benincasa hispida])

HSP 1 Score: 101.3 bits (251), Expect = 6.4e-18
Identity = 55/95 (57.89%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 33  QSKRGEDGGNGNPGNSKRGPDFSSFILRWILEISLKKILEGIQDFVILLKNVVGNPGREK 92
           Q     +GGNGNP +SK+GPDF + IL WIL +SL KI E I++FV LL N    PG+EK
Sbjct: 138 QELPSSEGGNGNPESSKQGPDFGNAILSWILLMSLTKIRELIENFVFLLNNAFRFPGKEK 197

Query: 93  LKPEEKVEMLEKINSSFFLALIIMLIVVVGRVQIA 128
           LK E++ E+ EKI SSFFL+L+I+LIV+V RVQ+A
Sbjct: 198 LKAEKRDEIDEKIQSSFFLSLVILLIVIVARVQMA 232

[Close]

BLAST of Spg039106 vs. NCBI nr
Match: KAG6575228.1 (hypothetical protein SDJN03_25867, partial [Cucurbita argyrosperma subsp. sororia] >KAG6575233.1 hypothetical protein SDJN03_25872, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-17
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 33  QSKRGEDGGNGNPGNSKRGPDFSSFILRWILEISLKKILEGIQDFVILLKNVVGNPGREK 92
           Q     +GGNGN G+SK G D  S IL WIL++SL KI E +Q+FV+LL N    PG+EK
Sbjct: 145 QELPSSEGGNGNLGSSKPGADIGSVILSWILQMSLTKIWELVQNFVVLLNNAFLFPGKEK 204

Query: 93  LKPEEKVEMLEKINSSFFLALIIMLIVVVGRVQIA 128
           LK E++ E+ EKI SSF L+LIIMLIVVV RVQIA
Sbjct: 205 LKAEKREEIDEKIQSSFVLSLIIMLIVVVSRVQIA 239

[Close]

BLAST of Spg039106 vs. NCBI nr
Match: XP_022156654.1 (uncharacterized protein LOC111023503 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 3.2e-17
Identity = 51/88 (57.95%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 40  GGNGNPGNSKRGPDFSSFILRWILEISLKKILEGIQDFVILLKNVVGNPGREKLKPEEKV 99
           G N  PG+SK+GPDF + ILRWILE+SLKK++E I+ F+ILL N    PG++KL PE+K 
Sbjct: 137 GVNEYPGSSKQGPDFGNIILRWILEMSLKKVVELIESFLILLNNAFHFPGKDKLTPEKKD 196

Query: 100 EMLEKINSSFFLALIIMLIVVVGRVQIA 128
           ++ EKI S+F L+L++ML+VVV R QIA
Sbjct: 197 DINEKIESAFVLSLVVMLMVVVARAQIA 224

[Close]

BLAST of Spg039106 vs. ExPASy TrEMBL
Match: A0A5D3DM87 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003190 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.6e-19
Identity = 57/88 (64.77%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 40  GGNGNPGNSKRGPDFSSFILRWILEISLKKILEGIQDFVILLKNVVGNPGREKLKPEEKV 99
           GGNGN G+SK+GPDF + IL WIL+ISL KI E I++FV LL N    PG+EKLKPE+K 
Sbjct: 140 GGNGNTGSSKQGPDFGNVILSWILQISLTKIRELIENFVSLLNNAFCFPGKEKLKPEKKD 199

Query: 100 EMLEKINSSFFLALIIMLIVVVGRVQIA 128
           E+ EKI SS  L+L++MLIVVV RVQIA
Sbjct: 200 EIDEKIQSSLVLSLVVMLIVVVARVQIA 227

[Close]

BLAST of Spg039106 vs. ExPASy TrEMBL
Match: A0A1S3CC23 (uncharacterized protein LOC103498772 OS=Cucumis melo OX=3656 GN=LOC103498772 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.6e-19
Identity = 57/88 (64.77%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 40  GGNGNPGNSKRGPDFSSFILRWILEISLKKILEGIQDFVILLKNVVGNPGREKLKPEEKV 99
           GGNGN G+SK+GPDF + IL WIL+ISL KI E I++FV LL N    PG+EKLKPE+K 
Sbjct: 140 GGNGNTGSSKQGPDFGNVILSWILQISLTKIRELIENFVSLLNNAFCFPGKEKLKPEKKD 199

Query: 100 EMLEKINSSFFLALIIMLIVVVGRVQIA 128
           E+ EKI SS  L+L++MLIVVV RVQIA
Sbjct: 200 EIDEKIQSSLVLSLVVMLIVVVARVQIA 227

[Close]

BLAST of Spg039106 vs. ExPASy TrEMBL
Match: A0A6J1H4L7 (uncharacterized protein LOC111460433 OS=Cucurbita moschata OX=3662 GN=LOC111460433 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 59/95 (62.11%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 33  QSKRGEDGGNGNPGNSKRGPDFSSFILRWILEISLKKILEGIQDFVILLKNVVGNPGREK 92
           Q     +GGNGN G+SKRG D  S IL WIL++SL KI E IQ+FV+LL N    PG+EK
Sbjct: 139 QELPSSEGGNGNLGSSKRGADIGSVILSWILQMSLTKIWELIQNFVVLLNNAFLFPGKEK 198

Query: 93  LKPEEKVEMLEKINSSFFLALIIMLIVVVGRVQIA 128
           LK E++ E+ EKI SSF L+LIIMLIVVV RVQIA
Sbjct: 199 LKAEKREEIDEKIQSSFVLSLIIMLIVVVSRVQIA 233

[Close]

BLAST of Spg039106 vs. ExPASy TrEMBL
Match: A0A6J1DU63 (uncharacterized protein LOC111023503 OS=Momordica charantia OX=3673 GN=LOC111023503 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-17
Identity = 51/88 (57.95%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 40  GGNGNPGNSKRGPDFSSFILRWILEISLKKILEGIQDFVILLKNVVGNPGREKLKPEEKV 99
           G N  PG+SK+GPDF + ILRWILE+SLKK++E I+ F+ILL N    PG++KL PE+K 
Sbjct: 137 GVNEYPGSSKQGPDFGNIILRWILEMSLKKVVELIESFLILLNNAFHFPGKDKLTPEKKD 196

Query: 100 EMLEKINSSFFLALIIMLIVVVGRVQIA 128
           ++ EKI S+F L+L++ML+VVV R QIA
Sbjct: 197 DINEKIESAFVLSLVVMLMVVVARAQIA 224

[Close]

BLAST of Spg039106 vs. ExPASy TrEMBL
Match: A0A0A0KFP6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108540 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.8e-16
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 40  GGNGNPGNSKRGPDFSSFILRWILEISLKKILEGIQDFVILLKNVVGNPGREKLKPEEKV 99
           GGNGN G+SK+G +F + IL WIL++S  KI E +++FV LL      PG+E LKPE+K 
Sbjct: 141 GGNGNTGSSKQGSEFGNVILSWILQMSFSKIRELLENFVSLLNYAFCFPGKENLKPEKKD 200

Query: 100 EMLEKINSSFFLALIIMLIVVVGRVQIA 128
           EM EKI S+F L+L+IM+IVVV RVQIA
Sbjct: 201 EMDEKIQSAFILSLVIMMIVVVARVQIA 228

The following BLAST results are available for this feature:

BLAST of Spg039106 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459730.1	7.5e-19	64.77	PREDICTED: uncharacterized protein LOC103498772 [Cucumis melo] >KAA0053454.1 unc...	[more]
XP_022959467.1	2.9e-18	62.11	uncharacterized protein LOC111460433 [Cucurbita moschata]	[more]
XP_038875839.1	6.4e-18	57.89	uncharacterized protein LOC120068201 [Benincasa hispida]	[more]
KAG6575228.1	2.4e-17	60.00	hypothetical protein SDJN03_25867, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022156654.1	3.2e-17	57.95	uncharacterized protein LOC111023503 [Momordica charantia]	[more]

BLAST of Spg039106 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg039106 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DM87	3.6e-19	64.77	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CC23	3.6e-19	64.77	uncharacterized protein LOC103498772 OS=Cucumis melo OX=3656 GN=LOC103498772 PE=...	[more]
A0A6J1H4L7	1.4e-18	62.11	uncharacterized protein LOC111460433 OS=Cucurbita moschata OX=3662 GN=LOC1114604...	[more]
A0A6J1DU63	1.5e-17	57.95	uncharacterized protein LOC111023503 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A0A0KFP6	3.8e-16	57.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108540 PE=4 SV=1	[more]

BLAST of Spg039106 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..53
None	No IPR available	PANTHER	PTHR33625	OS08G0179900 PROTEIN	coord: 49..126
None	No IPR available	PANTHER	PTHR33625:SF2	SUBFAMILY NOT NAMED	coord: 49..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg039106.1	Spg039106.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane