Spg038940 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg038940
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionEukaryotic translation initiation factor 3 subunit A
Locationscaffold12: 362784 .. 367258 (-)
RNA-Seq ExpressionSpg038940
SyntenySpg038940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTGGGACGTGGGAGTGGGAGTGGACGTGGGCAAAATACAGACATTTGAGTTGGTTGATTCTCGACACCCTGATGGAACCGATCGACTGACAAGTCTTGCAAAACTGACATCGACCGAGAAGGTAATGAAACCGACCGACCAACGTCGGTTCGGTCGGTTTTGGCCAGTTGGATCAATTTTTCGATTTTTTTTGCTCACCCCTAGTGTTTTATGTAGGTAAGTCACGAGAGACCTAATAAATTGGTATCAGAGCACGTCAAATCCTGGGGAAGACATGAAGTATGACTCACAAACAGATGGAGGAAAGGGTGGAAGGCAATGAGAAAGAGATAATGGAAGTTAAGCAATCGTTGAAAGGAGTTGAGGAAAACCTAGAGCAAATAGCATAGAGTTTGGGAAGAAATATAGAGCGGCTTTCGCTCGATATGAAGGAGAATCAACGAGCCATCTTGGCTCTAATGGAAAGGCAAACGACAAGTAAGGGTCAAGGATCATCCTCGATCACACACCCAACCAAAAAGGATCCTAGGAAACCGACTAGTTCGGTGGTTGAAGAGACCTCTGTCAAAACCGAAAGAGTGGTGGAGAACAGAGTCCAAAATGAGATACAAGGAGGAAACAAATGCAAATTTAAGAAGCTGGAAATGCCCGTGTTCATAGGGGGAAATCCGGATTTGTGGATCTTCAGGGCTGAACGTTACTTTGAAATACACTAGTTAAATGAGGCAGAGAGGATAACGGTAGCGATCATTAGTTTTGATCAAGATGTGGTTGATTGGTACCGATGGGAGTCAAACCAGGAGAAGATTACGACGTGGGAGATTGAAATCCAAGATTTTCGAGCGTTATTGTCCATCTCAAGAGGGGAGCTTATGCACACGTTTCTTGGCTATGAAACAAGAAGCCACGGTGGCCGACTTCAGGAAGACGTTTGAAATATATGCGGCACCGTTACCGAGCTGAAGTGGTGAGCCGGCAACCGGTTGGGCTGAGAGAAATCATGAAACAGGCCCAACTTATAGAGGACCGAGATCTGGCAATTAAAATGGCTACGAACCTAATGGGCTCGAACAACCCAAATGACAACAGTATGGGGATCCAACAGGCAAGTGCCAAGGCCGTATTACCTGGTCCACGAATAGAACGAATGACCCACAGATCTATCGGTTCGTAACCCTACCTGAGAAATTGGGGAAAATACGCAAAGAGGCACCTGTCAAACAACTATTAGACACTGAGTTCCAAGCTAAAAGAGAGAATGGCGAAAAGTATACTCCAAACCATTGCTGCAAGAATAGAGAAACGCGAAGGTTGCGAGTCTTATTGGTTAACAAAGAAGAGGAGATCGAGTTGGTCCAAGGAGGACAGGCTGAGGAAGAACCCGAAGTGGAGGTAGCTACTGTGGAAGTTGAAGATCTAGTTGAATTGGACTTGAAGCCAGTCATTGAGTTTTCAACTCCAGGCACTATGAAAGTTCGAGGAACCGTCCCGGAGAAGGAGGTGATAGTGTTGATAGACTGCGGGGCGACCCATAATTTTATATCGCAAGAGCTGGTGGAAGAGTTGAACCTTCCTCCCATATCAACGACCCACTATGGTATTGTCATGGGAAATGGAGTAGCCATCAAAGGAAAAGGGGTTTGCAAGGCTGTGGTGGTAACATCGATTTCAGCAGACTGCCTTCATTTGAAATTGGGAGGGGTGGATATCATTTTGGGAATGTTGTGGTTGTGCCCAATGGGATTTATAGGTGTGGATTGGAATGAACTTGTAATGTCATCTGAAGTAGAAGGGTCGAAGGTATTCGAGGGGATCCTGCACTGACAAGGGCTGAGGTATCATTGAAGATGATGAAAAAATCGTGGTCTACCTCGGACCAAGGGTTCCTAGTTGAGTTAAGAGGTTTGAACTTAAAAGACACCGAAGAGAAACTCCCAACAGAACAGGCGTGTGAAGAAGAGCTTCCCCGTTCTTTCTGAGAATTGATACAAGAGTATGAAGGAGTGATTGAGCTCCCAAAGGGACTTCCCCCAAAAAGGTCCATCGACCACAAAATTGTGTTACATGAAGGAACAAACCCAGTGAACGTACGACCTTATAAATACACCCATTGTCAGAAAAATGAAATTGGGAAACTAGTGAGTGACATGTTGATTTCAGGCATTATCAGACCCAGCTCGAGAACGTTCTCCAATCTAGTGTTTCTGGTTAAGAAAAAAGATGGGTGGTGGCGTTTTTGTGTGGACTATAGAGCTTTGAATAGACTATACCTGACAAATTTTCGATACCAGTGATAGAGGAACTTCTTGATGAACTTAATGGATCAACGATATATTCGAAGCTTGATCTGAAGTCTGGGTACCATCAGATCAGGGTGAACGAGTTCGACATTCAGAAGACAACTTTCTGCACCCACGAAGGTCACTATGAATTCTTAGTCATGCCCTTCGGATTGACAAATGCCCCTGCAATGTTCCAATCACTAATGAGCTAGGTATTTCGCCCGTTCCTAAGAAGATTTATCCTAGTGTTTTTTGACGATATACTTGTATATAGTCCAGACTTGGATACACATTGAAAGCATCTGGCGACAGTATTTGAAACTCTGAGAGACAACTCCTTATATGCCAACAGAAAGAAGTGCGTTTTTGTGAAGGAACGTGTGGAATATCTCGGCCATTGGATATCCGTAGAAGGGGTAGAGGCGGATAGTGAGAAAATTAAAGCTATGATGAATTGGCCCATGCCCAAGACCACCGAGGAATTGAGAGGATTCCTCGGACTTACTGGATATTACCAAAGATTCGTCAAGAACTATGGGATGTTGGCTGCTCCTCTAAACGACATTGCTAAAAAAAGATGCCTTTGTGTGGATTGATGAGGCTTCCAAGTCGTTTGAATTGTTGAGAAATGCCATGGTAACTCTTTTTGTTTTAGCCCTTCTTGATTTCTCATTAGCTTTCACTATTGAAAAAGATGCTTCTGAGTATGGCCTTGGTGCAGTTTTATCCTGAAAGGGGCACCCTATTGCTTACTTTAGCCAAGCGTTTTCCAATAGAGCACAACAAAAATCAGTGTACGAACAAGAACTGATGGTTGTTGTTCTCTCAATGCAAAAATGGCGTCACTACCTCTTGGGACAAATGTTCATGGTGCTTACTGACCAGAGAGCATTAAAACATCTATGGGAACAAAGAGAGATTCAACCGAAATATCATAAATGGCTCAGGAAGTTGCTGGGATATGATTTTGAAATAAAAGACCACCCTGGGCTATTGAACAAGGTGGCTGATGCGTTATCTAGAGTCATTTCTATAGGAGAGGTTCGAACAATGTCATTGATCTAGCCTTAGTCCAAGAAGAGGTTGCACAAGACTAGGAGTTAGTTCGAATTCGGAAGGAAATAGAAGAAGATCCTCTCAGTCATCCCAAATTTTAGTTAGAAAAAGGTCAACTACAATATAAAGGGAGGATGCTTATCTCAAGTAGGTCTTCTCTCATACCAGCCATCTTACATACATTTCATAACTCAGTTGTGGGAGGACATTCCGGATTCCTTCGAACATATAAAAGAATGACAGGGGAGCAATATAAGAGTGTTTGGTGTTTTCTTAGTTTGGATACCTAACAAACTGAGTTCTCTAGAAAGTCAAGAGGACTCAGAAAATGAGGAGGGCTACCTATTTACTAGAAAGATGGTTTAGGCCTTGGAAAATGAATTGCCTCAACCTCTAAAGGTAGTTTTGCTAGTAAAAAACGAACAAGGGAACTGGACAATATGACAAAGAGGATCGAGATGAAAAATGAGGTTGAAGATGGAGTTGAATGTGAGGACGAAGATAGGAGTCAGAAGGACCTAGAGATTACCTCATGAAGATAATCTCGTGGAATGTAAGAGGACTTCAAACGGTGCCCCAAAGAGCTCTAGTGAAGGACATTTTGATCCGAACGCAGTGATTGTCTAAGAAACTAAGCTGATGGCTATGAGTAGAAGGCTGTTGAAGTCTATTTGGAGTTCGAAAAGGATCGGTTGGTGGCCCTTGATACTATTGGTACTTCATGGAGTGTAATGATTATGTGGAAAGAAGATAGTGTCTTAATTCCCGATTCTCTCATTGGTTTGTTTTCTATTTCTATCATGTTTTTTTATAACAATGCTTTAATGATTGGATTATCGTGGTCTCCTATCTCAATCAAATAATGGCAAGAGTTGGTTGATTTAGCAAGCATTTGTTCTGACGTGTGGTGTTTAGCAGGGAGTTTTTAAGTGGTTTGATGACTATCTAAAAAGACAAATGAGGAAGGGCAACTAGTAGTATTATGACGTTTAATGGGCTGATTGATGATCTTGATCTCATTGGTGTGCCTTTAAATAATGGTAAATTCACTTGGGCTGATGGCATGGAAAGACTAATTTCTACTAGAATCGATAATTTTAAAGGAGTAAAGGATGTGGAACCACAAGTGTAG

mRNA sequence

ATGGGCTGGGACGTGGGAGTGGGAGTGGACGTGGGCAAAATACAGACATTTGAGTTGGTTGATTCTCGACACCCTGATGGAACCGATCGACTGACAAGTCTTGCAAAACTGACATCGACCGAGAAGAAGGCTGTTGAAGTCTATTTGGAGTTCGAAAAGGATCGGTTGGTGGCCCTTGATACTATTGGTACTTCATGGAGTGTAATGATTATGTGGAAAGAAGATAGTGTCTTAATTCCCGATTCTCTCATTGGTTTGGCAACTAGTAGTATTATGACGTTTAATGGGCTGATTGATGATCTTGATCTCATTGGTGTGCCTTTAAATAATGGTAAATTCACTTGGGCTGATGGCATGGAAAGACTAATTTCTACTAGAATCGATAATTTTAAAGGAGTAAAGGATGTGGAACCACAAGTGTAG

Coding sequence (CDS)

ATGGGCTGGGACGTGGGAGTGGGAGTGGACGTGGGCAAAATACAGACATTTGAGTTGGTTGATTCTCGACACCCTGATGGAACCGATCGACTGACAAGTCTTGCAAAACTGACATCGACCGAGAAGAAGGCTGTTGAAGTCTATTTGGAGTTCGAAAAGGATCGGTTGGTGGCCCTTGATACTATTGGTACTTCATGGAGTGTAATGATTATGTGGAAAGAAGATAGTGTCTTAATTCCCGATTCTCTCATTGGTTTGGCAACTAGTAGTATTATGACGTTTAATGGGCTGATTGATGATCTTGATCTCATTGGTGTGCCTTTAAATAATGGTAAATTCACTTGGGCTGATGGCATGGAAAGACTAATTTCTACTAGAATCGATAATTTTAAAGGAGTAAAGGATGTGGAACCACAAGTGTAG

Protein sequence

MGWDVGVGVDVGKIQTFELVDSRHPDGTDRLTSLAKLTSTEKKAVEVYLEFEKDRLVALDTIGTSWSVMIMWKEDSVLIPDSLIGLATSSIMTFNGLIDDLDLIGVPLNNGKFTWADGMERLISTRIDNFKGVKDVEPQV
Homology
[Close]
BLAST of Spg038940 vs. NCBI nr
Match: TYK05527.1 (eukaryotic translation initiation factor 3 subunit A-like [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 7.5e-04
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 0 

Query: 57  VALDTIGTSWSVMIMWKEDSVLIPDS------LIGLATSSIMTFNGLIDDLDLIGVPLNN 116
           V L+  G+S  +++MWKED + + DS      L  +   S+  FN LI+++DL+ +P  N
Sbjct: 184 VVLEACGSSTGILLMWKEDPIKVTDSIQDFNVLRWINEKSLNIFNRLIEEMDLVDIPFRN 243

Query: 117 GKFTWAD 118
           G F+W D
Sbjct: 244 GCFSWFD 250

[Close]
BLAST of Spg038940 vs. ExPASy TrEMBL
Match: A0A5D3C150 (Eukaryotic translation initiation factor 3 subunit A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00330 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.6e-04
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 0 

Query: 57  VALDTIGTSWSVMIMWKEDSVLIPDS------LIGLATSSIMTFNGLIDDLDLIGVPLNN 116
           V L+  G+S  +++MWKED + + DS      L  +   S+  FN LI+++DL+ +P  N
Sbjct: 184 VVLEACGSSTGILLMWKEDPIKVTDSIQDFNVLRWINEKSLNIFNRLIEEMDLVDIPFRN 243

Query: 117 GKFTWAD 118
           G F+W D
Sbjct: 244 GCFSWFD 250

The following BLAST results are available for this feature:
BLAST of Spg038940 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK05527.17.5e-0437.31eukaryotic translation initiation factor 3 subunit A-like [Cucumis melo var. mak... [more]
BLAST of Spg038940 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg038940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C1503.6e-0437.31Eukaryotic translation initiation factor 3 subunit A OS=Cucumis melo var. makuwa... [more]
BLAST of Spg038940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg038940.1Spg038940.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm