Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTGAATCTTGAAGCTCTGAGGAGGGATTTCGAGGCATCGAAGGTTCTTGCCGAAAATCAAGAATCGAGGCTTCGTCTCTACGAGACTAGAGCCCACGGCATCGCCATGGCCTACCTCATCTGGGAGAGGCTCTTCTTCTTTGCGATCTCTCGGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCACTCGACTGTGTTCATCGGTGGATGGTTTTGGGTTTGTCTCTTTGCTGTACCTTTGTGTTCGGTTTGCTCTTTCTCGACGCTGTCGTTATGCTGTGCCGGACTCAGAAGCTGCTCGACTTCATTTGCAAGAAACAGAGTGATGTCTGCCAACGGATGTCGGAGGCCGTAAACCAAGATGGTGGCCGGGCTTCGTCGATGGAGGCTGGAGGTTATTCCAGTGATGGGTTCGGGTTCGATTTCCGTTTGCAGGTCAGAATACTTAAGGATGATTCATTCAGAATTGTGGGGAGGAAAGTTTACATATGCGCCATTGCCGGTGCTCTGTTTGCTGTTACTGCTTTTGAACTATACGCCTCTAACTCCTTGCTTTGCCACTGA
mRNA sequence
ATGGCCGTGAATCTTGAAGCTCTGAGGAGGGATTTCGAGGCATCGAAGGTTCTTGCCGAAAATCAAGAATCGAGGCTTCGTCTCTACGAGACTAGAGCCCACGGCATCGCCATGGCCTACCTCATCTGGGAGAGGCTCTTCTTCTTTGCGATCTCTCGGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCACTCGACTGTGTTCATCGGTGGATGGTTTTGGGTTTGTCTCTTTGCTGTACCTTTGTGTTCGGTTTGCTCTTTCTCGACGCTGTCGTTATGCTGTGCCGGACTCAGAAGCTGCTCGACTTCATTTGCAAGAAACAGAGTGATGTCTGCCAACGGATGTCGGAGGCCGTAAACCAAGATGGTGGCCGGGCTTCGTCGATGGAGGCTGGAGGTTATTCCAGTGATGGGTTCGGGTTCGATTTCCGTTTGCAGGTCAGAATACTTAAGGATGATTCATTCAGAATTGTGGGGAGGAAAGTTTACATATGCGCCATTGCCGGTGCTCTGTTTGCTGTTACTGCTTTTGAACTATACGCCTCTAACTCCTTGCTTTGCCACTGA
Coding sequence (CDS)
ATGGCCGTGAATCTTGAAGCTCTGAGGAGGGATTTCGAGGCATCGAAGGTTCTTGCCGAAAATCAAGAATCGAGGCTTCGTCTCTACGAGACTAGAGCCCACGGCATCGCCATGGCCTACCTCATCTGGGAGAGGCTCTTCTTCTTTGCGATCTCTCGGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCACTCGACTGTGTTCATCGGTGGATGGTTTTGGGTTTGTCTCTTTGCTGTACCTTTGTGTTCGGTTTGCTCTTTCTCGACGCTGTCGTTATGCTGTGCCGGACTCAGAAGCTGCTCGACTTCATTTGCAAGAAACAGAGTGATGTCTGCCAACGGATGTCGGAGGCCGTAAACCAAGATGGTGGCCGGGCTTCGTCGATGGAGGCTGGAGGTTATTCCAGTGATGGGTTCGGGTTCGATTTCCGTTTGCAGGTCAGAATACTTAAGGATGATTCATTCAGAATTGTGGGGAGGAAAGTTTACATATGCGCCATTGCCGGTGCTCTGTTTGCTGTTACTGCTTTTGAACTATACGCCTCTAACTCCTTGCTTTGCCACTGA
Protein sequence
MAVNLEALRRDFEASKVLAENQESRLRLYETRAHGIAMAYLIWERLFFFAISRASSSSSSSSSSLDCVHRWMVLGLSLCCTFVFGLLFLDAVVMLCRTQKLLDFICKKQSDVCQRMSEAVNQDGGRASSMEAGGYSSDGFGFDFRLQVRILKDDSFRIVGRKVYICAIAGALFAVTAFELYASNSLLCH
Homology
BLAST of Spg038906 vs. NCBI nr
Match:
XP_022157172.1 (uncharacterized protein LOC111023951 [Momordica charantia])
HSP 1 Score: 165.2 bits (417), Expect = 5.3e-37
Identity = 98/181 (54.14%), Postives = 122/181 (67.40%), Query Frame = 0
Query: 3 VNLEALRRDFEASKVLAENQESRLRLYETRAHGIAMAYLIWERLFFFAISRASSSSSSSS 62
+ L L+RDFE K+LAE QE LR YE+RA I M YLIWER FFFA+S+ +S
Sbjct: 1 MKLRVLKRDFEELKLLAEKQEPILRFYESRAQNITMGYLIWERFFFFALSQ-------TS 60
Query: 63 SSLDCVHRWMVLGLSLCCTFVFGLLFLDAVVMLCRTQKLLDFICKKQSDVCQRMSEAVNQ 122
S L C+ +VLGLSL C+FV+ LLFL+AV ML RTQ +D ICK+QSD+CQ++ +A NQ
Sbjct: 61 SPLKCIDWRVVLGLSLVCSFVYFLLFLEAVTMLYRTQNQMDMICKEQSDICQQILDAGNQ 120
Query: 123 DGGRASSMEAGGYSSD-GFGFDFRLQVRILKDDSFRIVGRKVYICAIAGALFAVTAFELY 182
D G S+MEAG S F F F ++ + D SFRI +KVYI AI +L AVTA ELY
Sbjct: 121 DDG-GSAMEAGDLSDGVAFNFSFHMRTTLNYDYSFRIFQKKVYISAIISSLVAVTALELY 173
BLAST of Spg038906 vs. NCBI nr
Match:
XP_022157130.1 (uncharacterized protein LOC111023927 [Momordica charantia])
HSP 1 Score: 162.9 bits (411), Expect = 2.6e-36
Identity = 98/181 (54.14%), Postives = 124/181 (68.51%), Query Frame = 0
Query: 8 LRRDFEASKVLAENQESRLRLYETRAHGIAMAYLIWERLFFFAISRASSSSSSSSSSLDC 67
L+R+FEA K L E QESR++ +E+RA I MAYLIW RLFFFAIS+ +SSS L C
Sbjct: 6 LKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQ------TSSSLLKC 65
Query: 68 VHRWMVLGLSLCCTFVFGLLFLDAVVMLCRTQKLLDFICKKQSDVCQRMSEAVNQDGGRA 127
+ WMVLGLS+ C FV+ L FL+AV ML R Q +D ICK+Q+++CQ++ A +Q
Sbjct: 66 IDWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVD 125
Query: 128 SSMEAGGYSSDGFGFDFRLQVRILKDDSFRIVGRKVYICAIAGALFAVTAFELYASNSLL 187
+MEAG SSDGF F F V++L+ +FRIV RK YICA AL AVTA ELYA + L
Sbjct: 126 LAMEAGD-SSDGFQFSF--HVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACSWLY 177
Query: 188 C 189
C
Sbjct: 186 C 177
BLAST of Spg038906 vs. NCBI nr
Match:
XP_022957798.1 (uncharacterized protein LOC111459231 [Cucurbita moschata])
HSP 1 Score: 145.6 bits (366), Expect = 4.4e-31
Identity = 93/180 (51.67%), Postives = 118/180 (65.56%), Query Frame = 0
Query: 3 VNLEALRRDFEASKVLAENQESRLRLYETRAHGIAMAYLIWERLFFFAISRASSSSSSSS 62
+ L+ L+RDFE LAEN++ ++R Y++R + MAYL W R F+FA+ SS+S
Sbjct: 1 MELQWLKRDFE---TLAENKQQKVRYYDSRVNYTTMAYLAWLRFFYFAL-------SSAS 60
Query: 63 SSLDCVHRWMVLGLSLCCTFVFGLLFLDAVVMLCRTQKLLDFICKKQSDVCQRMSEAVNQ 122
S+L CVH MVLGLSL +F++ L+ L + L RT LLD ICK+ + +CQR+ EA+NQ
Sbjct: 61 STLHCVHWPMVLGLSLSSSFLYFLILLQPFIKLYRTHNLLDTICKEHTLICQRILEAMNQ 120
Query: 123 DGGRASSMEAGGYSSDGFGFDFRLQVRILKDDSFRIVGRKVYICAIAGALFAVTAFELYA 182
D EAG S+DG FDF LQVR L DDSF KVY CAIA AL AVTAFELYA
Sbjct: 121 DA------EAGA-SNDGVRFDFGLQVRALSDDSFCGGEMKVYGCAIAFALLAVTAFELYA 163
BLAST of Spg038906 vs. NCBI nr
Match:
XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])
HSP 1 Score: 142.1 bits (357), Expect = 4.8e-30
Identity = 90/185 (48.65%), Postives = 113/185 (61.08%), Query Frame = 0
Query: 5 LEALRRDFEASKVLAENQESRLRLYETRAHGIAMAYLIWERLFFFAISRASSSSSSSSSS 64
L L R FE K + E QESR+R YET+ I YLI+ RLFFF IS+ +SSS
Sbjct: 3 LGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQ-------TSSS 62
Query: 65 LDCVHRWMVLGLSLCCTFVFGLLFLDAVVMLCRTQKLLDFICKKQSDVCQRMSEAVNQDG 124
+C W++L LSL C+F++ LLFLDAV ML RTQ LD ICK+ ++ Q++ + NQD
Sbjct: 63 FNCKDWWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQD- 122
Query: 125 GRASSMEAGGYSSDGFGFDFRLQVRILKDDSFRIVGRKVYICAIAGALFAVTAFELYASN 184
SME G S GF+F ++L D FRIVGRKVYI AL AVTA ELY S
Sbjct: 123 DVGLSMETGESSG---GFEFGFHEKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSK 176
Query: 185 SLLCH 190
+LC+
Sbjct: 183 YVLCN 176
BLAST of Spg038906 vs. NCBI nr
Match:
KAG6605757.1 (hypothetical protein SDJN03_03074, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 139.8 bits (351), Expect = 2.4e-29
Identity = 91/188 (48.40%), Postives = 119/188 (63.30%), Query Frame = 0
Query: 3 VNLEALRRDFEASKVLAENQESRLRLYETRAHGIAMAYLIWERLFFFAISRASSSSSSSS 62
+ LEAL+RD E LAENQ+ R+R YE+RA+ + YL W R F+FA+ SS+S
Sbjct: 1 MELEALKRDLEC---LAENQQQRVRYYESRANYTTLGYLAWLRFFYFAV-------SSNS 60
Query: 63 SSLDCVHRWMVLGLSLCCTFVFGLLFLDAVVMLCRTQKLLDFICKKQSDVCQRMSEAVNQ 122
SSL CVH MVLGLSL + ++ L+ L + L RT LL IC + + +CQR+ E+ NQ
Sbjct: 61 SSLHCVHWPMVLGLSLSSSSLYFLILLPPFIKLYRTHNLLHTICNRHTHLCQRILESTNQ 120
Query: 123 DGGRASSMEAGGYSSDGFGFDFRL-QVRILKDDSFRIVGRKVYICAIAGALFAVTAFELY 182
DG EAG S+DG F+ R QVR L +DSF KVY CA+A ALFAVTAF+LY
Sbjct: 121 DG------EAGA-STDGVEFNVRFHQVRALHNDSFSGGEIKVYTCAVAFALFAVTAFQLY 171
Query: 183 ASNSLLCH 190
A ++C+
Sbjct: 181 ACKYVVCN 171
BLAST of Spg038906 vs. ExPASy TrEMBL
Match:
A0A6J1DTV6 (uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023951 PE=4 SV=1)
HSP 1 Score: 165.2 bits (417), Expect = 2.6e-37
Identity = 98/181 (54.14%), Postives = 122/181 (67.40%), Query Frame = 0
Query: 3 VNLEALRRDFEASKVLAENQESRLRLYETRAHGIAMAYLIWERLFFFAISRASSSSSSSS 62
+ L L+RDFE K+LAE QE LR YE+RA I M YLIWER FFFA+S+ +S
Sbjct: 1 MKLRVLKRDFEELKLLAEKQEPILRFYESRAQNITMGYLIWERFFFFALSQ-------TS 60
Query: 63 SSLDCVHRWMVLGLSLCCTFVFGLLFLDAVVMLCRTQKLLDFICKKQSDVCQRMSEAVNQ 122
S L C+ +VLGLSL C+FV+ LLFL+AV ML RTQ +D ICK+QSD+CQ++ +A NQ
Sbjct: 61 SPLKCIDWRVVLGLSLVCSFVYFLLFLEAVTMLYRTQNQMDMICKEQSDICQQILDAGNQ 120
Query: 123 DGGRASSMEAGGYSSD-GFGFDFRLQVRILKDDSFRIVGRKVYICAIAGALFAVTAFELY 182
D G S+MEAG S F F F ++ + D SFRI +KVYI AI +L AVTA ELY
Sbjct: 121 DDG-GSAMEAGDLSDGVAFNFSFHMRTTLNYDYSFRIFQKKVYISAIISSLVAVTALELY 173
BLAST of Spg038906 vs. ExPASy TrEMBL
Match:
A0A6J1DS87 (uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023927 PE=4 SV=1)
HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 98/181 (54.14%), Postives = 124/181 (68.51%), Query Frame = 0
Query: 8 LRRDFEASKVLAENQESRLRLYETRAHGIAMAYLIWERLFFFAISRASSSSSSSSSSLDC 67
L+R+FEA K L E QESR++ +E+RA I MAYLIW RLFFFAIS+ +SSS L C
Sbjct: 6 LKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQ------TSSSLLKC 65
Query: 68 VHRWMVLGLSLCCTFVFGLLFLDAVVMLCRTQKLLDFICKKQSDVCQRMSEAVNQDGGRA 127
+ WMVLGLS+ C FV+ L FL+AV ML R Q +D ICK+Q+++CQ++ A +Q
Sbjct: 66 IDWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVD 125
Query: 128 SSMEAGGYSSDGFGFDFRLQVRILKDDSFRIVGRKVYICAIAGALFAVTAFELYASNSLL 187
+MEAG SSDGF F F V++L+ +FRIV RK YICA AL AVTA ELYA + L
Sbjct: 126 LAMEAGD-SSDGFQFSF--HVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACSWLY 177
Query: 188 C 189
C
Sbjct: 186 C 177
BLAST of Spg038906 vs. ExPASy TrEMBL
Match:
A0A6J1H1A1 (uncharacterized protein LOC111459231 OS=Cucurbita moschata OX=3662 GN=LOC111459231 PE=4 SV=1)
HSP 1 Score: 145.6 bits (366), Expect = 2.1e-31
Identity = 93/180 (51.67%), Postives = 118/180 (65.56%), Query Frame = 0
Query: 3 VNLEALRRDFEASKVLAENQESRLRLYETRAHGIAMAYLIWERLFFFAISRASSSSSSSS 62
+ L+ L+RDFE LAEN++ ++R Y++R + MAYL W R F+FA+ SS+S
Sbjct: 1 MELQWLKRDFE---TLAENKQQKVRYYDSRVNYTTMAYLAWLRFFYFAL-------SSAS 60
Query: 63 SSLDCVHRWMVLGLSLCCTFVFGLLFLDAVVMLCRTQKLLDFICKKQSDVCQRMSEAVNQ 122
S+L CVH MVLGLSL +F++ L+ L + L RT LLD ICK+ + +CQR+ EA+NQ
Sbjct: 61 STLHCVHWPMVLGLSLSSSFLYFLILLQPFIKLYRTHNLLDTICKEHTLICQRILEAMNQ 120
Query: 123 DGGRASSMEAGGYSSDGFGFDFRLQVRILKDDSFRIVGRKVYICAIAGALFAVTAFELYA 182
D EAG S+DG FDF LQVR L DDSF KVY CAIA AL AVTAFELYA
Sbjct: 121 DA------EAGA-SNDGVRFDFGLQVRALSDDSFCGGEMKVYGCAIAFALLAVTAFELYA 163
BLAST of Spg038906 vs. ExPASy TrEMBL
Match:
A0A6J1DSQ0 (uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023958 PE=4 SV=1)
HSP 1 Score: 142.1 bits (357), Expect = 2.3e-30
Identity = 90/185 (48.65%), Postives = 113/185 (61.08%), Query Frame = 0
Query: 5 LEALRRDFEASKVLAENQESRLRLYETRAHGIAMAYLIWERLFFFAISRASSSSSSSSSS 64
L L R FE K + E QESR+R YET+ I YLI+ RLFFF IS+ +SSS
Sbjct: 3 LGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQ-------TSSS 62
Query: 65 LDCVHRWMVLGLSLCCTFVFGLLFLDAVVMLCRTQKLLDFICKKQSDVCQRMSEAVNQDG 124
+C W++L LSL C+F++ LLFLDAV ML RTQ LD ICK+ ++ Q++ + NQD
Sbjct: 63 FNCKDWWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQD- 122
Query: 125 GRASSMEAGGYSSDGFGFDFRLQVRILKDDSFRIVGRKVYICAIAGALFAVTAFELYASN 184
SME G S GF+F ++L D FRIVGRKVYI AL AVTA ELY S
Sbjct: 123 DVGLSMETGESSG---GFEFGFHEKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSK 176
Query: 185 SLLCH 190
+LC+
Sbjct: 183 YVLCN 176
BLAST of Spg038906 vs. ExPASy TrEMBL
Match:
A0A6J1DX74 (uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023953 PE=4 SV=1)
HSP 1 Score: 130.6 bits (327), Expect = 7.0e-27
Identity = 88/182 (48.35%), Postives = 109/182 (59.89%), Query Frame = 0
Query: 8 LRRDFEASKVLAENQESRLRLYETRAHGIAMAYLIWERLFFFAISRASSSSSSSSSSLDC 67
LRR F K + E QESR+R +E + I YLI RLFFF IS+ SSS C
Sbjct: 6 LRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQTSSSK--------C 65
Query: 68 VHRWMVLGLSLCCTFVFGLLFLDAVVMLCRTQKLLDFICKKQSDVCQRMSEAVNQDGGRA 127
W++L LSL C+FV+ LLFLDA L +T+ LD ICK+ +VCQ++ A NQD
Sbjct: 66 HDWWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDL 125
Query: 128 SSMEAGGYSSDGFGFDFRLQVRILKDDSFRIVGRKVYICAIAGALFAVTAFELYASNSLL 187
+ME G + SDGF F F ++ +L D FR VGRKVYI AL AVTA ELY S LL
Sbjct: 126 -AMEGGDF-SDGFEFGFHEKMLVL--DHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLL 175
Query: 188 CH 190
C+
Sbjct: 186 CN 175
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022157172.1 | 5.3e-37 | 54.14 | uncharacterized protein LOC111023951 [Momordica charantia] | [more] |
XP_022157130.1 | 2.6e-36 | 54.14 | uncharacterized protein LOC111023927 [Momordica charantia] | [more] |
XP_022957798.1 | 4.4e-31 | 51.67 | uncharacterized protein LOC111459231 [Cucurbita moschata] | [more] |
XP_022157182.1 | 4.8e-30 | 48.65 | uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... | [more] |
KAG6605757.1 | 2.4e-29 | 48.40 | hypothetical protein SDJN03_03074, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DTV6 | 2.6e-37 | 54.14 | uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A6J1DS87 | 1.3e-36 | 54.14 | uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A6J1H1A1 | 2.1e-31 | 51.67 | uncharacterized protein LOC111459231 OS=Cucurbita moschata OX=3662 GN=LOC1114592... | [more] |
A0A6J1DSQ0 | 2.3e-30 | 48.65 | uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
A0A6J1DX74 | 7.0e-27 | 48.35 | uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 G... | [more] |
Match Name | E-value | Identity | Description | |