Spg038895 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCCGGTGTGTACATGACGTGGTACGAATGTGCCCGCCAAGTACATGGTTTTCGTGGTGCCGTTTACCAGTCGTATGAGACGTTGGACGACGCAGAAGCAACTTATATCGCTTACACCATGGAAGTGGACAATCATTCCAGTCGTCATGGAGACCTTCACCTCCACAATAGCTATCCTAACCGTGAACTAGATAGAAATGTAGTCAATAGGACTGTTAGCACATGTAGTGGAACATACCATGTCCTCCTCTTCATAGTAGGGTTTTTTCTTGGTGTAGCTGTCGTCATATTAGGTAGTCTGATGTAGTATGGACATTTATTTTCAGGATTGTCCGTAGAAGCTATCGAATGGATGCCCAAGATAATGAAATTCAAGAATTGATCGCAATTCTTACTATCATTTGTGCGACACAGTATCAGTTCATCGCGACAGTTCTCGGGATCTTGCACTCGGGTTATTCCTGGGAATTTCGATCCCCGACTCATGTACGACACCGAATCAGGCAACTGAACTTCTTCCGTCTTATTCACGAGGATGATTTAGCTTGTCGTGAAAATACACGCATGGATCGACGAACATTCACGATCCTGTGTACCCTTTTACGGACCACTGGTAGACTACAAGCCACTAGCTACGTCGATGTGGAGGAGATGGTTGCAATGTTCCTCCACATTGTTGCACACGACGTTAAGAATCGTGTGATCCGTCGCCAATTTGTGCGTTCGGGAGAGACCGTATCCCGACACTTCAATGTCGTACTGGATGCAGTACTTCGATTGCACTCAGTCCTATTGAAAGCACCTGAACCAGTTACCAATGCATGTACGGACGATAGGTGGAAGTGGTTTGAGGTAATGAAATGTTGTTATCTTGTCTTCCACTGGAGGACAACCTAACTTCAAGAAAATACTCGACCACTGAAACTTTATCACTCGTCTGTTCGCAGAACTGCTTAGGTGCTCTTGATGGTACACACATCAAGGTCAACGTCAGTGCGGTAGATCGCCCCAGATATCGGACGAGGAAGGGGGAGATTGCTACTAATGTACTGGCCGTTTGTTCTCAGAATGGCGAGTTCATTTTCGTGTTCCCAGGGTGGGAAGGATCTGCATTGGACTCAAGGGTACTTCGTGATGCAGTCTCACGTCCTTCGGGACTAAAGGTTCCCAGGGGCTACTACTACCTCTGTGATGCCGGATATCCTAACGCGGATGGATTCCTAGCACCATATCGTAGCACACGATACCACCTAACCGAGTGGCGAGGTGGAAACCCACCCACGACCCCGAAGGAGCTTTTCAACATGAGACATTCGTCGGCACGAAATGTCATAGAAAGAGCCTTCGGACTGTTGAAGGGTCGATGGGCAATATTGAGGGGCAAATCTTACTACCCTGTTGATGTGCAAGTGAAAACCATCACCGCTTGCTGCTACCTTCATAACCTAATAACACGGGAGATGGGACAGGATCCTTCGATGGAGGCCGCTCATACGGGGGAGCAAGAGTCTAACGATATGGGAACAGAGAACATCACGTTCGTTGAATCCACCACTGCATGGAGTTCCTGGAGGGATGAATTGGCGAATCGAATGTTCGCTGAATGGAACAACAACTGAGATATGCCTCAACTTCTGCTTGTTAAATTTTTTTGTAAAACGAAACTGTAGACAGTGCCACTCTTTGTTTGTATATCGAACATGTCGTAGGAACAGTATGATGTAGATAGGTCGTAATGGGTGTACGAAAACATGTATATTTTGGAAATGTAGGTTTGAATTTTAACTGTTTATTGGAACAAATGTTCATTAAATTTTACTAGTATGGAACTTTGTAAATGTTCTTTATTCTTTATGTCATCCACCTATGGTTCTGATTATTTGCTAAACATGCAGATGGCCGCATCTGCCTCAGCTTCAAAGAAAGAAAAACACATATGGACGCCAGAGGAAGACGAAGTGCTTGTGCAGTGCCTACTGCACCTAGTCCAAGTGGGGGGATGGCGTGCAGACAATGGGACGTTTCGGGCTGGTTACCAGAATCAGATTGGAAAGATGATGAAAGAAAGACTACCAGGATGCAACATAGTCGTGAGCCCGAACATTGAATCTAGAGTGAAGACCCTAAAAAAACAGTACATGGTGATAGCTGAGATGATGGGACCGGCCTGCAGTGGATTTGGTTGGAATGATGAGAGAAAATGCATAGAGGCGGAGAAGGAGATATTCGATTTGTGGGTCGAGGTAAGCGAACAACGATCATTATTATGATATACATCTGATACGCACATCTGCGAAAAATGCATGCTAATAAAACATTTATCTTCCACCTGTAGGGACATCCACAGGCCAAGGGCCTCCGTAACCGGCCATTCCCATGGTTCAATGAGTTGGCGCTCGTTTTCGGGAAGGACAGCGCTAGAGGAGTGAGAGCCCGAACCCCAATTGAGATGACACCTGAACCAGAGCCGGTAGCCGATTTGGATGAAGACATGAACGTGGATTTTGAGGATTGCTACGTCCCAAGTCCCCCAGTTATTGATCCCACACTTGGAGAAGAATTATGTGGGACACCGACTGGTAGGACAGCTGGTGCAGGACCTTCTAGGGCAGTAAATAAGAGACGATTATCCATTGGGAACGTGGCGGAGGTACTGGAGAATGGATTCCAGATGACCGCACAACAAATCGAGAAGATTGCGCTCTGGCCGACCAAGAGGGACGAGCTCGAGAGGAGTCGGCGGAAGGAGTTATATGCGGAGCTACAATCTATTCCTGGGGTGTCTATGGAGGACGGCTTGGTGGTCGCACGGGCACTACTATCAGATGAGAGGATGTTGACTCACTTTATGGACTTCCCTCCAGAATGGAAGTTCGACTACTGTATGGAGATCCTCGGTAGGGCATCGAGACAGCCCCCGCAGCCATGA ATGCCCGGTGTGTACATGACGTGGTACGAATGTGCCCGCCAAGTACATGGTTTTCGTGGTGCCGTTTACCAGTCGTATGAGACGTTGGACGACGCAGAAGCAACTTATATCGCTTACACCATGGAAGTGGACAATCATTCCAGTCGTCATGGAGACCTTCACCTCCACAATAGCTATCCTAACCGTGAACTAGATAGAAATGTAGTCAATAGGACTGTTAGCACATGTAGTGGAACATACCATGTCCTCCTCTTCATAGTAGGGATTGTCCGTAGAAGCTATCGAATGGATGCCCAAGATAATGAAATTCAAGAATTGATCGCAATTCTTACTATCATTTGTGCGACACAGTATCAGTTCATCGCGACAATGGCCGCATCTGCCTCAGCTTCAAAGAAAGAAAAACACATATGGACGCCAGAGGAAGACGAAGTGCTTGTGCAGTGCCTACTGCACCTAGTCCAAGTGGGGGGATGGCGTGCAGACAATGGGACGTTTCGGGCTGGTTACCAGAATCAGATTGGAAAGATGATGAAAGAAAGACTACCAGGATGCAACATAGTCGTGAGCCCGAACATTGAATCTAGAGTGAAGACCCTAAAAAAACAGTACATGGTGATAGCTGAGATGATGGGACCGGCCTGCAGTGGATTTGGTTGGAATGATGAGAGAAAATGCATAGAGGCGGAGAAGGAGATATTCGATTTGTGGGTCGAGGGACATCCACAGGCCAAGGGCCTCCGTAACCGGCCATTCCCATGGTTCAATGAGTTGGCGCTCGTTTTCGGGAAGGACAGCGCTAGAGGAGTGAGAGCCCGAACCCCAATTGAGATGACACCTGAACCAGAGCCGGTAGCCGATTTGGATGAAGACATGAACGTGGATTTTGAGGATTGCTACGTCCCAAGTCCCCCAGTTATTGATCCCACACTTGGAGAAGAATTATGTGGGACACCGACTGGTAGGACAGCTGGTGCAGGACCTTCTAGGGCAGTAAATAAGAGACGATTATCCATTGGGAACGTGGCGGAGGTACTGGAGAATGGATTCCAGATGACCGCACAACAAATCGAGAAGATTGCGCTCTGGCCGACCAAGAGGGACGAGCTCGAGAGGAGTCGGCGGAAGGAGTTATATGCGGAGCTACAATCTATTCCTGGGGTGTCTATGGAGGACGGCTTGGTGGTCGCACGGGCACTACTATCAGATGAGAGGATGTTGACTCACTTTATGGACTTCCCTCCAGAATGGAAGTTCGACTACTGTATGGAGATCCTCGGTAGGGCATCGAGACAGCCCCCGCAGCCATGA ATGCCCGGTGTGTACATGACGTGGTACGAATGTGCCCGCCAAGTACATGGTTTTCGTGGTGCCGTTTACCAGTCGTATGAGACGTTGGACGACGCAGAAGCAACTTATATCGCTTACACCATGGAAGTGGACAATCATTCCAGTCGTCATGGAGACCTTCACCTCCACAATAGCTATCCTAACCGTGAACTAGATAGAAATGTAGTCAATAGGACTGTTAGCACATGTAGTGGAACATACCATGTCCTCCTCTTCATAGTAGGGATTGTCCGTAGAAGCTATCGAATGGATGCCCAAGATAATGAAATTCAAGAATTGATCGCAATTCTTACTATCATTTGTGCGACACAGTATCAGTTCATCGCGACAATGGCCGCATCTGCCTCAGCTTCAAAGAAAGAAAAACACATATGGACGCCAGAGGAAGACGAAGTGCTTGTGCAGTGCCTACTGCACCTAGTCCAAGTGGGGGGATGGCGTGCAGACAATGGGACGTTTCGGGCTGGTTACCAGAATCAGATTGGAAAGATGATGAAAGAAAGACTACCAGGATGCAACATAGTCGTGAGCCCGAACATTGAATCTAGAGTGAAGACCCTAAAAAAACAGTACATGGTGATAGCTGAGATGATGGGACCGGCCTGCAGTGGATTTGGTTGGAATGATGAGAGAAAATGCATAGAGGCGGAGAAGGAGATATTCGATTTGTGGGTCGAGGGACATCCACAGGCCAAGGGCCTCCGTAACCGGCCATTCCCATGGTTCAATGAGTTGGCGCTCGTTTTCGGGAAGGACAGCGCTAGAGGAGTGAGAGCCCGAACCCCAATTGAGATGACACCTGAACCAGAGCCGGTAGCCGATTTGGATGAAGACATGAACGTGGATTTTGAGGATTGCTACGTCCCAAGTCCCCCAGTTATTGATCCCACACTTGGAGAAGAATTATGTGGGACACCGACTGGTAGGACAGCTGGTGCAGGACCTTCTAGGGCAGTAAATAAGAGACGATTATCCATTGGGAACGTGGCGGAGGTACTGGAGAATGGATTCCAGATGACCGCACAACAAATCGAGAAGATTGCGCTCTGGCCGACCAAGAGGGACGAGCTCGAGAGGAGTCGGCGGAAGGAGTTATATGCGGAGCTACAATCTATTCCTGGGGTGTCTATGGAGGACGGCTTGGTGGTCGCACGGGCACTACTATCAGATGAGAGGATGTTGACTCACTTTATGGACTTCCCTCCAGAATGGAAGTTCGACTACTGTATGGAGATCCTCGGTAGGGCATCGAGACAGCCCCCGCAGCCATGA MPGVYMTWYECARQVHGFRGAVYQSYETLDDAEATYIAYTMEVDNHSSRHGDLHLHNSYPNRELDRNVVNRTVSTCSGTYHVLLFIVGIVRRSYRMDAQDNEIQELIAILTIICATQYQFIATMAASASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCNIVVSPNIESRVKTLKKQYMVIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKGLRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPVIDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSDERMLTHFMDFPPEWKFDYCMEILGRASRQPPQP Homology
BLAST of Spg038895 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]) HSP 1 Score: 266.5 bits (680), Expect = 3.9e-67 Identity = 132/288 (45.83%), Postives = 182/288 (63.19%), Query Frame = 0
BLAST of Spg038895 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 265.0 bits (676), Expect = 1.1e-66 Identity = 136/302 (45.03%), Postives = 186/302 (61.59%), Query Frame = 0
BLAST of Spg038895 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]) HSP 1 Score: 243.8 bits (621), Expect = 2.7e-60 Identity = 117/244 (47.95%), Postives = 164/244 (67.21%), Query Frame = 0
BLAST of Spg038895 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 241.1 bits (614), Expect = 1.8e-59 Identity = 115/237 (48.52%), Postives = 161/237 (67.93%), Query Frame = 0
BLAST of Spg038895 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]) HSP 1 Score: 226.9 bits (577), Expect = 3.4e-55 Identity = 108/206 (52.43%), Postives = 141/206 (68.45%), Query Frame = 0
BLAST of Spg038895 vs. ExPASy Swiss-Prot
Match: Q07762 (Ribonuclease H OS=Crithidia fasciculata OX=5656 GN=RNH1 PE=3 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 3.8e-04 Identity = 22/50 (44.00%), Postives = 29/50 (58.00%), Query Frame = 0
BLAST of Spg038895 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1) HSP 1 Score: 266.5 bits (680), Expect = 1.9e-67 Identity = 132/288 (45.83%), Postives = 182/288 (63.19%), Query Frame = 0
BLAST of Spg038895 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1) HSP 1 Score: 265.0 bits (676), Expect = 5.5e-67 Identity = 136/302 (45.03%), Postives = 186/302 (61.59%), Query Frame = 0
BLAST of Spg038895 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 1.3e-60 Identity = 117/244 (47.95%), Postives = 164/244 (67.21%), Query Frame = 0
BLAST of Spg038895 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1) HSP 1 Score: 241.1 bits (614), Expect = 8.5e-60 Identity = 115/237 (48.52%), Postives = 161/237 (67.93%), Query Frame = 0
BLAST of Spg038895 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1) HSP 1 Score: 226.9 bits (577), Expect = 1.7e-55 Identity = 108/206 (52.43%), Postives = 141/206 (68.45%), Query Frame = 0
BLAST of Spg038895 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 73.6 bits (179), Expect = 4.5e-13 Identity = 46/146 (31.51%), Postives = 70/146 (47.95%), Query Frame = 0
BLAST of Spg038895 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 66.6 bits (161), Expect = 5.5e-11 Identity = 44/187 (23.53%), Postives = 81/187 (43.32%), Query Frame = 0
BLAST of Spg038895 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). ) HSP 1 Score: 50.1 bits (118), Expect = 5.4e-06 Identity = 32/170 (18.82%), Postives = 70/170 (41.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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