Spg038895 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg038895
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Locationscaffold12: 7575977 .. 7578907 (-)
RNA-Seq ExpressionSpg038895
SyntenySpg038895
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCGGTGTGTACATGACGTGGTACGAATGTGCCCGCCAAGTACATGGTTTTCGTGGTGCCGTTTACCAGTCGTATGAGACGTTGGACGACGCAGAAGCAACTTATATCGCTTACACCATGGAAGTGGACAATCATTCCAGTCGTCATGGAGACCTTCACCTCCACAATAGCTATCCTAACCGTGAACTAGATAGAAATGTAGTCAATAGGACTGTTAGCACATGTAGTGGAACATACCATGTCCTCCTCTTCATAGTAGGGTTTTTTCTTGGTGTAGCTGTCGTCATATTAGGTAGTCTGATGTAGTATGGACATTTATTTTCAGGATTGTCCGTAGAAGCTATCGAATGGATGCCCAAGATAATGAAATTCAAGAATTGATCGCAATTCTTACTATCATTTGTGCGACACAGTATCAGTTCATCGCGACAGTTCTCGGGATCTTGCACTCGGGTTATTCCTGGGAATTTCGATCCCCGACTCATGTACGACACCGAATCAGGCAACTGAACTTCTTCCGTCTTATTCACGAGGATGATTTAGCTTGTCGTGAAAATACACGCATGGATCGACGAACATTCACGATCCTGTGTACCCTTTTACGGACCACTGGTAGACTACAAGCCACTAGCTACGTCGATGTGGAGGAGATGGTTGCAATGTTCCTCCACATTGTTGCACACGACGTTAAGAATCGTGTGATCCGTCGCCAATTTGTGCGTTCGGGAGAGACCGTATCCCGACACTTCAATGTCGTACTGGATGCAGTACTTCGATTGCACTCAGTCCTATTGAAAGCACCTGAACCAGTTACCAATGCATGTACGGACGATAGGTGGAAGTGGTTTGAGGTAATGAAATGTTGTTATCTTGTCTTCCACTGGAGGACAACCTAACTTCAAGAAAATACTCGACCACTGAAACTTTATCACTCGTCTGTTCGCAGAACTGCTTAGGTGCTCTTGATGGTACACACATCAAGGTCAACGTCAGTGCGGTAGATCGCCCCAGATATCGGACGAGGAAGGGGGAGATTGCTACTAATGTACTGGCCGTTTGTTCTCAGAATGGCGAGTTCATTTTCGTGTTCCCAGGGTGGGAAGGATCTGCATTGGACTCAAGGGTACTTCGTGATGCAGTCTCACGTCCTTCGGGACTAAAGGTTCCCAGGGGCTACTACTACCTCTGTGATGCCGGATATCCTAACGCGGATGGATTCCTAGCACCATATCGTAGCACACGATACCACCTAACCGAGTGGCGAGGTGGAAACCCACCCACGACCCCGAAGGAGCTTTTCAACATGAGACATTCGTCGGCACGAAATGTCATAGAAAGAGCCTTCGGACTGTTGAAGGGTCGATGGGCAATATTGAGGGGCAAATCTTACTACCCTGTTGATGTGCAAGTGAAAACCATCACCGCTTGCTGCTACCTTCATAACCTAATAACACGGGAGATGGGACAGGATCCTTCGATGGAGGCCGCTCATACGGGGGAGCAAGAGTCTAACGATATGGGAACAGAGAACATCACGTTCGTTGAATCCACCACTGCATGGAGTTCCTGGAGGGATGAATTGGCGAATCGAATGTTCGCTGAATGGAACAACAACTGAGATATGCCTCAACTTCTGCTTGTTAAATTTTTTTGTAAAACGAAACTGTAGACAGTGCCACTCTTTGTTTGTATATCGAACATGTCGTAGGAACAGTATGATGTAGATAGGTCGTAATGGGTGTACGAAAACATGTATATTTTGGAAATGTAGGTTTGAATTTTAACTGTTTATTGGAACAAATGTTCATTAAATTTTACTAGTATGGAACTTTGTAAATGTTCTTTATTCTTTATGTCATCCACCTATGGTTCTGATTATTTGCTAAACATGCAGATGGCCGCATCTGCCTCAGCTTCAAAGAAAGAAAAACACATATGGACGCCAGAGGAAGACGAAGTGCTTGTGCAGTGCCTACTGCACCTAGTCCAAGTGGGGGGATGGCGTGCAGACAATGGGACGTTTCGGGCTGGTTACCAGAATCAGATTGGAAAGATGATGAAAGAAAGACTACCAGGATGCAACATAGTCGTGAGCCCGAACATTGAATCTAGAGTGAAGACCCTAAAAAAACAGTACATGGTGATAGCTGAGATGATGGGACCGGCCTGCAGTGGATTTGGTTGGAATGATGAGAGAAAATGCATAGAGGCGGAGAAGGAGATATTCGATTTGTGGGTCGAGGTAAGCGAACAACGATCATTATTATGATATACATCTGATACGCACATCTGCGAAAAATGCATGCTAATAAAACATTTATCTTCCACCTGTAGGGACATCCACAGGCCAAGGGCCTCCGTAACCGGCCATTCCCATGGTTCAATGAGTTGGCGCTCGTTTTCGGGAAGGACAGCGCTAGAGGAGTGAGAGCCCGAACCCCAATTGAGATGACACCTGAACCAGAGCCGGTAGCCGATTTGGATGAAGACATGAACGTGGATTTTGAGGATTGCTACGTCCCAAGTCCCCCAGTTATTGATCCCACACTTGGAGAAGAATTATGTGGGACACCGACTGGTAGGACAGCTGGTGCAGGACCTTCTAGGGCAGTAAATAAGAGACGATTATCCATTGGGAACGTGGCGGAGGTACTGGAGAATGGATTCCAGATGACCGCACAACAAATCGAGAAGATTGCGCTCTGGCCGACCAAGAGGGACGAGCTCGAGAGGAGTCGGCGGAAGGAGTTATATGCGGAGCTACAATCTATTCCTGGGGTGTCTATGGAGGACGGCTTGGTGGTCGCACGGGCACTACTATCAGATGAGAGGATGTTGACTCACTTTATGGACTTCCCTCCAGAATGGAAGTTCGACTACTGTATGGAGATCCTCGGTAGGGCATCGAGACAGCCCCCGCAGCCATGA

mRNA sequence

ATGCCCGGTGTGTACATGACGTGGTACGAATGTGCCCGCCAAGTACATGGTTTTCGTGGTGCCGTTTACCAGTCGTATGAGACGTTGGACGACGCAGAAGCAACTTATATCGCTTACACCATGGAAGTGGACAATCATTCCAGTCGTCATGGAGACCTTCACCTCCACAATAGCTATCCTAACCGTGAACTAGATAGAAATGTAGTCAATAGGACTGTTAGCACATGTAGTGGAACATACCATGTCCTCCTCTTCATAGTAGGGATTGTCCGTAGAAGCTATCGAATGGATGCCCAAGATAATGAAATTCAAGAATTGATCGCAATTCTTACTATCATTTGTGCGACACAGTATCAGTTCATCGCGACAATGGCCGCATCTGCCTCAGCTTCAAAGAAAGAAAAACACATATGGACGCCAGAGGAAGACGAAGTGCTTGTGCAGTGCCTACTGCACCTAGTCCAAGTGGGGGGATGGCGTGCAGACAATGGGACGTTTCGGGCTGGTTACCAGAATCAGATTGGAAAGATGATGAAAGAAAGACTACCAGGATGCAACATAGTCGTGAGCCCGAACATTGAATCTAGAGTGAAGACCCTAAAAAAACAGTACATGGTGATAGCTGAGATGATGGGACCGGCCTGCAGTGGATTTGGTTGGAATGATGAGAGAAAATGCATAGAGGCGGAGAAGGAGATATTCGATTTGTGGGTCGAGGGACATCCACAGGCCAAGGGCCTCCGTAACCGGCCATTCCCATGGTTCAATGAGTTGGCGCTCGTTTTCGGGAAGGACAGCGCTAGAGGAGTGAGAGCCCGAACCCCAATTGAGATGACACCTGAACCAGAGCCGGTAGCCGATTTGGATGAAGACATGAACGTGGATTTTGAGGATTGCTACGTCCCAAGTCCCCCAGTTATTGATCCCACACTTGGAGAAGAATTATGTGGGACACCGACTGGTAGGACAGCTGGTGCAGGACCTTCTAGGGCAGTAAATAAGAGACGATTATCCATTGGGAACGTGGCGGAGGTACTGGAGAATGGATTCCAGATGACCGCACAACAAATCGAGAAGATTGCGCTCTGGCCGACCAAGAGGGACGAGCTCGAGAGGAGTCGGCGGAAGGAGTTATATGCGGAGCTACAATCTATTCCTGGGGTGTCTATGGAGGACGGCTTGGTGGTCGCACGGGCACTACTATCAGATGAGAGGATGTTGACTCACTTTATGGACTTCCCTCCAGAATGGAAGTTCGACTACTGTATGGAGATCCTCGGTAGGGCATCGAGACAGCCCCCGCAGCCATGA

Coding sequence (CDS)

ATGCCCGGTGTGTACATGACGTGGTACGAATGTGCCCGCCAAGTACATGGTTTTCGTGGTGCCGTTTACCAGTCGTATGAGACGTTGGACGACGCAGAAGCAACTTATATCGCTTACACCATGGAAGTGGACAATCATTCCAGTCGTCATGGAGACCTTCACCTCCACAATAGCTATCCTAACCGTGAACTAGATAGAAATGTAGTCAATAGGACTGTTAGCACATGTAGTGGAACATACCATGTCCTCCTCTTCATAGTAGGGATTGTCCGTAGAAGCTATCGAATGGATGCCCAAGATAATGAAATTCAAGAATTGATCGCAATTCTTACTATCATTTGTGCGACACAGTATCAGTTCATCGCGACAATGGCCGCATCTGCCTCAGCTTCAAAGAAAGAAAAACACATATGGACGCCAGAGGAAGACGAAGTGCTTGTGCAGTGCCTACTGCACCTAGTCCAAGTGGGGGGATGGCGTGCAGACAATGGGACGTTTCGGGCTGGTTACCAGAATCAGATTGGAAAGATGATGAAAGAAAGACTACCAGGATGCAACATAGTCGTGAGCCCGAACATTGAATCTAGAGTGAAGACCCTAAAAAAACAGTACATGGTGATAGCTGAGATGATGGGACCGGCCTGCAGTGGATTTGGTTGGAATGATGAGAGAAAATGCATAGAGGCGGAGAAGGAGATATTCGATTTGTGGGTCGAGGGACATCCACAGGCCAAGGGCCTCCGTAACCGGCCATTCCCATGGTTCAATGAGTTGGCGCTCGTTTTCGGGAAGGACAGCGCTAGAGGAGTGAGAGCCCGAACCCCAATTGAGATGACACCTGAACCAGAGCCGGTAGCCGATTTGGATGAAGACATGAACGTGGATTTTGAGGATTGCTACGTCCCAAGTCCCCCAGTTATTGATCCCACACTTGGAGAAGAATTATGTGGGACACCGACTGGTAGGACAGCTGGTGCAGGACCTTCTAGGGCAGTAAATAAGAGACGATTATCCATTGGGAACGTGGCGGAGGTACTGGAGAATGGATTCCAGATGACCGCACAACAAATCGAGAAGATTGCGCTCTGGCCGACCAAGAGGGACGAGCTCGAGAGGAGTCGGCGGAAGGAGTTATATGCGGAGCTACAATCTATTCCTGGGGTGTCTATGGAGGACGGCTTGGTGGTCGCACGGGCACTACTATCAGATGAGAGGATGTTGACTCACTTTATGGACTTCCCTCCAGAATGGAAGTTCGACTACTGTATGGAGATCCTCGGTAGGGCATCGAGACAGCCCCCGCAGCCATGA

Protein sequence

MPGVYMTWYECARQVHGFRGAVYQSYETLDDAEATYIAYTMEVDNHSSRHGDLHLHNSYPNRELDRNVVNRTVSTCSGTYHVLLFIVGIVRRSYRMDAQDNEIQELIAILTIICATQYQFIATMAASASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCNIVVSPNIESRVKTLKKQYMVIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKGLRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPVIDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTKRDELERSRRKELYAELQSIPGVSMEDGLVVARALLSDERMLTHFMDFPPEWKFDYCMEILGRASRQPPQP
Homology
BLAST of Spg038895 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 266.5 bits (680), Expect = 3.9e-67
Identity = 132/288 (45.83%), Postives = 182/288 (63.19%), Query Frame = 0

Query: 127 SASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCN 186
           +++ SK  KH WT  EDEVLV+CLL LV+ GGWRADNGTF+ GY                
Sbjct: 139 ASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKLGY---------------- 198

Query: 187 IVVSPNIESRVKTLKKQYMVIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKG 246
                          KQY  IAEMMGPACSGFGWN+ +KCIE EK +FD WV+GHP A+G
Sbjct: 199 --------------LKQYTAIAEMMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQG 258

Query: 247 LRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPV 306
           L N+PFP+F +L +VFG+D A G R +TP+EM+ +     + ++DM+++ ED  +P+P  
Sbjct: 259 LLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQTARDTE-EDDMDINLEDFDIPNPHG 318

Query: 307 IDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTK 366
           ++P  GE++  TPT  T  AG SR   KRR   G++ +      + T+++I KIA W  +
Sbjct: 319 LEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIATWQRE 378

Query: 367 RDELERSRRKELYAELQSIPGVSMEDGLVVARALLSDERMLTHFMDFP 415
           + E+E S  K LYAELQ+IPG+ ++D L+VA +LL D  ML  F+D+P
Sbjct: 379 KMEIESSLHKRLYAELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYP 395

BLAST of Spg038895 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 1.1e-66
Identity = 136/302 (45.03%), Postives = 186/302 (61.59%), Query Frame = 0

Query: 127 SASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCN 186
           +++ SK  KH WT   DEVLV+CLL LV+ GGWRADNGTF+ GY  Q+ K+MKE++ G N
Sbjct: 2   ASTNSKATKHRWT-TIDEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGSN 61

Query: 187 IVVSPNIESRVKTLKKQYMVIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKG 246
           I V+PN++SRVK LKKQY+ IAEMMGPACSGFGWN+ERKCIEAEK +FD WV+       
Sbjct: 62  IQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK------- 121

Query: 247 LRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPV 306
                              +AR +                  ++DM+++ ED  +P+P  
Sbjct: 122 -------------------TARDIE-----------------EDDMDINLEDFDIPNPHG 181

Query: 307 IDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTK 366
           ++P  GE++  TPT     AG SR   KRR   G++ +      + T+++I KIA W  +
Sbjct: 182 LEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQRE 241

Query: 367 RDELERSRRKELYAELQSIPGVSMEDGLVVARALLSDERMLTHFMDFPPEWKFDYCMEIL 426
           + E+E S  K LY +LQ+IPG+ ++D L+VA +LL D  ML  F+D+P EWK+  CM IL
Sbjct: 242 KMEIESSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRIL 259

Query: 427 GR 429
           GR
Sbjct: 302 GR 259

BLAST of Spg038895 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 243.8 bits (621), Expect = 2.7e-60
Identity = 117/244 (47.95%), Postives = 164/244 (67.21%), Query Frame = 0

Query: 120 FIATMAASASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMK 179
           F+ T   +++ SK  KH WT  +D+ LV+CLL LV+ GGWRA+N TF+  Y  Q+ K+MK
Sbjct: 27  FVETTNMASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMK 86

Query: 180 ERLPGCNIVVSPNIESRVKTLKKQYMVIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVE 239
           E++P  NI V+ N+ESRVK LKKQY  IA+MMGPACS FGWN+ERKCIEAEK +FD WV+
Sbjct: 87  EKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 146

Query: 240 GHPQAKGLRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDC 299
           GHP A+GL N+PF +F +L +VFG+D A G R +  +EM  +     + ++DM+++ ED 
Sbjct: 147 GHPNARGLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTE-EDDMDINLEDF 206

Query: 300 YVPSPPVIDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEK 359
            +P+P  ++P  GE++  T    T  AG SR   KRR   G++ +      Q T+++I K
Sbjct: 207 DIPNPHGLEPPSGEDMPSTLISMTHDAGSSRPSKKRRSYPGDLMDTFRASMQETSKEIGK 266

Query: 360 IALW 364
           IA W
Sbjct: 267 IAAW 269

BLAST of Spg038895 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 241.1 bits (614), Expect = 1.8e-59
Identity = 115/237 (48.52%), Postives = 161/237 (67.93%), Query Frame = 0

Query: 127 SASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCN 186
           +++ SK  KH WT  +D+ LV+CLL LV+ GGWRA+N TF+  Y  Q+ K+MKE++P  N
Sbjct: 2   ASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSN 61

Query: 187 IVVSPNIESRVKTLKKQYMVIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKG 246
           I V+ N+ESRVK LKKQY  IA+MMGPACS FGWN+ERKCIEAEK +FD WV+GHP A+G
Sbjct: 62  IQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARG 121

Query: 247 LRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPV 306
           L N+PF +F +L +VFG+D A G R +  +EM  +     + ++DM+++ ED  +P+P  
Sbjct: 122 LLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTE-EDDMDINLEDFDIPNPHG 181

Query: 307 IDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIALW 364
           ++P  GE++  T    T  AG SR   KRR   G++ +      Q T+++I KIA W
Sbjct: 182 LEPPSGEDMPSTLISMTHDAGSSRPSKKRRSYPGDLMDTFRASMQETSKEIGKIAAW 237

BLAST of Spg038895 vs. NCBI nr
Match: TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 3.4e-55
Identity = 108/206 (52.43%), Postives = 141/206 (68.45%), Query Frame = 0

Query: 131 SKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCNIVVS 190
           SK  KH WT  EDE LV+CLL LV+ G WR DNGTF+ GY  Q+ K+MKE++   NI V+
Sbjct: 91  SKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESNIQVT 150

Query: 191 PNIESRVKTLKKQYMVIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKGLRNR 250
           PN+ES VK LKKQY  IAEMMGP CSGF WN ERKCIEAEK + + WV+GH  A+ L N+
Sbjct: 151 PNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNK 210

Query: 251 PFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPVIDPT 310
           PFP+F +L +VFG+D A G + +TP+EM  +     + ++DM ++ ED  +P+P  ++P 
Sbjct: 211 PFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTE-EDDMIINLEDFDIPNPHGLEPP 270

Query: 311 LGEELCGTPTGRTAGAGPSRAVNKRR 337
            GE++  TPT     AG SR   KRR
Sbjct: 271 SGEDMPSTPTSMAHDAGSSRPSKKRR 295

BLAST of Spg038895 vs. ExPASy Swiss-Prot
Match: Q07762 (Ribonuclease H OS=Crithidia fasciculata OX=5656 GN=RNH1 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.8e-04
Identity = 22/50 (44.00%), Postives = 29/50 (58.00%), Query Frame = 0

Query: 3   GVYMTWYECARQVHGFRGAVYQSYETLDDAEATYIAYTMEVDNHSSRHGD 53
           G+Y TW +C+ QV GF GAVY+S+ TL +A A   A+        S  GD
Sbjct: 166 GIYSTWDQCSEQVKGFSGAVYKSFRTLSEARAYLTAHPARSGLEKSDRGD 215

BLAST of Spg038895 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.9e-67
Identity = 132/288 (45.83%), Postives = 182/288 (63.19%), Query Frame = 0

Query: 127 SASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCN 186
           +++ SK  KH WT  EDEVLV+CLL LV+ GGWRADNGTF+ GY                
Sbjct: 139 ASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKLGY---------------- 198

Query: 187 IVVSPNIESRVKTLKKQYMVIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKG 246
                          KQY  IAEMMGPACSGFGWN+ +KCIE EK +FD WV+GHP A+G
Sbjct: 199 --------------LKQYTAIAEMMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQG 258

Query: 247 LRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPV 306
           L N+PFP+F +L +VFG+D A G R +TP+EM+ +     + ++DM+++ ED  +P+P  
Sbjct: 259 LLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMSSQTARDTE-EDDMDINLEDFDIPNPHG 318

Query: 307 IDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTK 366
           ++P  GE++  TPT  T  AG SR   KRR   G++ +      + T+++I KIA W  +
Sbjct: 319 LEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIATWQRE 378

Query: 367 RDELERSRRKELYAELQSIPGVSMEDGLVVARALLSDERMLTHFMDFP 415
           + E+E S  K LYAELQ+IPG+ ++D L+VA +LL D  ML  F+D+P
Sbjct: 379 KMEIESSLHKRLYAELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYP 395

BLAST of Spg038895 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 5.5e-67
Identity = 136/302 (45.03%), Postives = 186/302 (61.59%), Query Frame = 0

Query: 127 SASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCN 186
           +++ SK  KH WT   DEVLV+CLL LV+ GGWRADNGTF+ GY  Q+ K+MKE++ G N
Sbjct: 2   ASTNSKATKHRWT-TIDEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGSN 61

Query: 187 IVVSPNIESRVKTLKKQYMVIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKG 246
           I V+PN++SRVK LKKQY+ IAEMMGPACSGFGWN+ERKCIEAEK +FD WV+       
Sbjct: 62  IQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK------- 121

Query: 247 LRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPV 306
                              +AR +                  ++DM+++ ED  +P+P  
Sbjct: 122 -------------------TARDIE-----------------EDDMDINLEDFDIPNPHG 181

Query: 307 IDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIALWPTK 366
           ++P  GE++  TPT     AG SR   KRR   G++ +      + T+++I KIA W  +
Sbjct: 182 LEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQRE 241

Query: 367 RDELERSRRKELYAELQSIPGVSMEDGLVVARALLSDERMLTHFMDFPPEWKFDYCMEIL 426
           + E+E S  K LY +LQ+IPG+ ++D L+VA +LL D  ML  F+D+P EWK+  CM IL
Sbjct: 242 KMEIESSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRIL 259

Query: 427 GR 429
           GR
Sbjct: 302 GR 259

BLAST of Spg038895 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-60
Identity = 117/244 (47.95%), Postives = 164/244 (67.21%), Query Frame = 0

Query: 120 FIATMAASASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMK 179
           F+ T   +++ SK  KH WT  +D+ LV+CLL LV+ GGWRA+N TF+  Y  Q+ K+MK
Sbjct: 27  FVETTNMASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMK 86

Query: 180 ERLPGCNIVVSPNIESRVKTLKKQYMVIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVE 239
           E++P  NI V+ N+ESRVK LKKQY  IA+MMGPACS FGWN+ERKCIEAEK +FD WV+
Sbjct: 87  EKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVK 146

Query: 240 GHPQAKGLRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDC 299
           GHP A+GL N+PF +F +L +VFG+D A G R +  +EM  +     + ++DM+++ ED 
Sbjct: 147 GHPNARGLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTE-EDDMDINLEDF 206

Query: 300 YVPSPPVIDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEK 359
            +P+P  ++P  GE++  T    T  AG SR   KRR   G++ +      Q T+++I K
Sbjct: 207 DIPNPHGLEPPSGEDMPSTLISMTHDAGSSRPSKKRRSYPGDLMDTFRASMQETSKEIGK 266

Query: 360 IALW 364
           IA W
Sbjct: 267 IAAW 269

BLAST of Spg038895 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.5e-60
Identity = 115/237 (48.52%), Postives = 161/237 (67.93%), Query Frame = 0

Query: 127 SASASKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCN 186
           +++ SK  KH WT  +D+ LV+CLL LV+ GGWRA+N TF+  Y  Q+ K+MKE++P  N
Sbjct: 2   ASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRSN 61

Query: 187 IVVSPNIESRVKTLKKQYMVIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKG 246
           I V+ N+ESRVK LKKQY  IA+MMGPACS FGWN+ERKCIEAEK +FD WV+GHP A+G
Sbjct: 62  IQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARG 121

Query: 247 LRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPV 306
           L N+PF +F +L +VFG+D A G R +  +EM  +     + ++DM+++ ED  +P+P  
Sbjct: 122 LLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTE-EDDMDINLEDFDIPNPHG 181

Query: 307 IDPTLGEELCGTPTGRTAGAGPSRAVNKRRLSIGNVAEVLENGFQMTAQQIEKIALW 364
           ++P  GE++  T    T  AG SR   KRR   G++ +      Q T+++I KIA W
Sbjct: 182 LEPPSGEDMPSTLISMTHDAGSSRPSKKRRSYPGDLMDTFRASMQETSKEIGKIAAW 237

BLAST of Spg038895 vs. ExPASy TrEMBL
Match: A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.7e-55
Identity = 108/206 (52.43%), Postives = 141/206 (68.45%), Query Frame = 0

Query: 131 SKKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTFRAGYQNQIGKMMKERLPGCNIVVS 190
           SK  KH WT  EDE LV+CLL LV+ G WR DNGTF+ GY  Q+ K+MKE++   NI V+
Sbjct: 91  SKVTKHWWTTIEDEALVECLLQLVEKGCWRVDNGTFKPGYLVQVQKLMKEKILESNIQVT 150

Query: 191 PNIESRVKTLKKQYMVIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKGLRNR 250
           PN+ES VK LKKQY  IAEMMGP CSGF WN ERKCIEAEK + + WV+GH  A+ L N+
Sbjct: 151 PNLESGVKILKKQYTTIAEMMGPVCSGFSWNKERKCIEAEKSVSNDWVKGHLNARYLLNK 210

Query: 251 PFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDMNVDFEDCYVPSPPVIDPT 310
           PFP+F +L +VFG+D A G + +TP+EM  +     + ++DM ++ ED  +P+P  ++P 
Sbjct: 211 PFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTE-EDDMIINLEDFDIPNPHGLEPP 270

Query: 311 LGEELCGTPTGRTAGAGPSRAVNKRR 337
            GE++  TPT     AG SR   KRR
Sbjct: 271 SGEDMPSTPTSMAHDAGSSRPSKKRR 295

BLAST of Spg038895 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 4.5e-13
Identity = 46/146 (31.51%), Postives = 70/146 (47.95%), Query Frame = 0

Query: 132 KKEKHIWTPEEDEVLVQCLLHLVQVGGWRADNGTF-----RAGYQNQIGKMMKERLPGCN 191
           K + + W+PEE ++LVQ L+  +    WR  NGT         +  +I K        C 
Sbjct: 11  KGDYNPWSPEETKLLVQLLVEGIN-NNWRDSNGTISKLTVETKFMPEINKEF------CR 70

Query: 192 IVVSPNIESRVKTLKKQYMVIAEMMGPACSGFGWNDERKCIEAEKEIFDLWVEGHPQAKG 251
                +  SR+K LK QY    ++     SGFGW+   K   A  E++  +++ HP  K 
Sbjct: 71  SKNYNHYLSRMKYLKIQYQSCLDLQ-RFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQ 130

Query: 252 LRNRPFPWFNELALVFGKDSARGVRA 273
           LR   F +F+EL ++FG+  A G  A
Sbjct: 131 LRYDTFEFFDELQIIFGEGVATGKNA 148

BLAST of Spg038895 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 5.5e-11
Identity = 44/187 (23.53%), Postives = 81/187 (43.32%), Query Frame = 0

Query: 123 TMAASASASKKEKHIWTPEEDEVLVQCLLHLVQVG----------GWRADNGTFRAGYQN 182
           T A+    S + +  WTP  D  L+  L+  V  G           W      F A + +
Sbjct: 312 TKASQEQNSDRTRIFWTPPMDYHLIDLLVEQVNNGNRVGQTFITSAWNEMVTAFNAKFGS 371

Query: 183 QIGKMMKERLPGCNIVVSPNIESRVKTLKKQYMVIAEMMGPACSGFGWNDERKCIEAEKE 242
           Q  K +              +++R K L++ Y  I  ++    +GF W+  R  + A+ +
Sbjct: 372 QHNKDV--------------LKNRYKHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDD 431

Query: 243 IFDLWVEGHPQAKGLRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPEPVADLDEDM 299
           I++ +++ HP+A+  R +  P +  L  +FGK+++ G   R      P P     ++E  
Sbjct: 432 IWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDGRYTRLAQAFDPSPAETVRMNESG 482

BLAST of Spg038895 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 5.4e-06
Identity = 32/170 (18.82%), Postives = 70/170 (41.18%), Query Frame = 0

Query: 124 MAASASASKKEKHIWTPEEDEVLVQCLL----------HLVQVGGWRADNGTFRAGYQNQ 183
           M+   + + + +  WTP  +   +  +L          H      W      F + + +Q
Sbjct: 1   MSNQTTCNDRTRTYWTPTMERFFIDLMLEHLHRGNRTGHTFNKQAWNEMLTVFNSKFGSQ 60

Query: 184 IGKMMKERLPGCNIVVSPNIESRVKTLKKQYMVIAEMMGPACSGFGWNDERKCIEAEKEI 243
             K +              ++SR   L KQY  +  ++     GF W+   + +  +  +
Sbjct: 61  YDKDV--------------LKSRYTNLWKQYNDVKCLLDH--GGFVWDQTHQTVIGDDSL 120

Query: 244 FDLWVEGHPQAKGLRNRPFPWFNELALVFGKDSARGVRARTPIEMTPEPE 284
           + L+++ HP+A+  + +P   F++L L++G   A G  + +  ++  E E
Sbjct: 121 WSLYLKAHPEARVYKTKPVLNFSDLCLIYGYTVADGRYSMSSHDLEIEDE 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK07921.13.9e-6745.83hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa][more]
KAA0050106.11.1e-6645.03retrotransposon protein [Cucumis melo var. makuwa][more]
XP_008455678.12.7e-6047.95PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
TYJ96933.11.8e-5948.52retrotransposon protein [Cucumis melo var. makuwa][more]
TYK26842.13.4e-5552.43uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q077623.8e-0444.00Ribonuclease H OS=Crithidia fasciculata OX=5656 GN=RNH1 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A5D3C7T41.9e-6745.83Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U7F75.5e-6745.03Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3C2521.3e-6047.95uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P... [more]
A0A5D3BC958.5e-6048.52Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DTL01.7e-5552.43Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
AT5G27260.14.5e-1331.51unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G24960.25.5e-1123.53unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G24960.15.4e-0618.82unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024752Myb/SANT-like domainPFAMPF12776Myb_DNA-bind_3coord: 138..233
e-value: 5.5E-9
score: 36.9
IPR037056Ribonuclease H1, N-terminal domain superfamilyGENE3D3.40.970.10coord: 1..37
e-value: 2.6E-10
score: 42.6
IPR011320Ribonuclease H1, N-terminalPFAMPF01693Cauli_VIcoord: 2..34
e-value: 2.0E-10
score: 40.8
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 127..427
IPR009027Ribosomal protein L9/RNase H1, N-terminalSUPERFAMILY55658L9 N-domain-likecoord: 2..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg038895.1Spg038895.1mRNA