Spg038825 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GCCAGGTATATTATTCTATTCAATATGAAAGTGATATAAACGGTTTGTGAGATATATGACAAACCCACGAACAATGTAACAAGATAATTAAATTGAATAACAAATTGATACATTGTCAAATGAGAGAGAAAGAGAGAGAGAGTTTGAACTATTCCATTTCCCCCACCTCACTTTATATAATATATCCACATGTAAATCCCCAAACAAAGCAAGTCTAAGAGAGAGAGATCACAAGATGGGAAATACCATGGGAGGAGGATCAAGAAGAAGAAAGAGAACAACAAAAGTGATGAAAATCAATGGCGAAACCATCAAAATAACAACTCCAACCACAGCCTCCCAAGTCACAAGCCACTATCCAAATCACTCCCTCTACGAATCCCAATCCATCAAGCAATTTGGCCTCCGAGCCAAGCCTTTGGACCCTCACCACCAACTCAAACCTAAAACCCTCTACTTCCTCCTCCAATTGCCCTCCCTCCCCGGCGACCACCGCCCGCTGCAGCGCGCCCGCTCCGACATCCGTTTGTCCGCCTCCGACCGCCTCGAGTGTCTCATGCTCTCTCGTCGATCGGTTTCTGACCTTCAAACCACCGTTCGATCGAATTTTGTGGGGGTGTCGGATGACGGTGGCGCCGTCGTGCCGATGCAGGTCAAGTTTCGATTGCCGAGGGCAGAGTTTGAGAGGCTGACGAAGGAATGTAAGAGCAAGGTGGAGGCGGCGGAGAGGATTGTAGATTTTTGCATGAGAGACAACGGTGGCCACGACGACCAAGATGATAGGTTGTGGAAGATGGGTGGCGCGTGTAGTGGTAATAAAGCGCGTGAGGTACGTTTTAGTTTTTTTTTTAGTTTTTTATTATTATTATTATTATTTTTTATTTTTTATTTTGTCTTCTATAATTTAGGGTCCGTTTGGAATACATTCTAATTTAAATGTTTTTCAAGAATGCATTTTTTCAAAAACATTTTGTATAAAAATTGTTTAGAATTTAAACACTCATATGTTTGGTTACATTTCCTATAAGTGTTTTTATACACAAGTTATTGTATACTTAA ATGGGAAATACCATGGGAGGAGGATCAAGAAGAAGAAAGAGAACAACAAAAGTGATGAAAATCAATGGCGAAACCATCAAAATAACAACTCCAACCACAGCCTCCCAAGTCACAAGCCACTATCCAAATCACTCCCTCTACGAATCCCAATCCATCAAGCAATTTGGCCTCCGAGCCAAGCCTTTGGACCCTCACCACCAACTCAAACCTAAAACCCTCTACTTCCTCCTCCAATTGCCCTCCCTCCCCGGCGACCACCGCCCGCTGCAGCGCGCCCGCTCCGACATCCGTTTGTCCGCCTCCGACCGCCTCGAGTGTCTCATGCTCTCTCGTCGATCGGTTTCTGACCTTCAAACCACCGTTCGATCGAATTTTGTGGGGGTGTCGGATGACGGTGGCGCCGTCGTGCCGATGCAGGTCAAGTTTCGATTGCCGAGGGCAGAGTTTGAGAGGCTGACGAAGGAATGTAAGAGCAAGGTGGAGGCGGCGGAGAGGATTGTAGATTTTTGCATGAGAGACAACGGTGGCCACGACGACCAAGATGATAGGTTGTGGAAGATGGGTGGCGCGTGTAGTGGTAATAAAGCGCGTGAGTTATTGTATACTTAA ATGGGAAATACCATGGGAGGAGGATCAAGAAGAAGAAAGAGAACAACAAAAGTGATGAAAATCAATGGCGAAACCATCAAAATAACAACTCCAACCACAGCCTCCCAAGTCACAAGCCACTATCCAAATCACTCCCTCTACGAATCCCAATCCATCAAGCAATTTGGCCTCCGAGCCAAGCCTTTGGACCCTCACCACCAACTCAAACCTAAAACCCTCTACTTCCTCCTCCAATTGCCCTCCCTCCCCGGCGACCACCGCCCGCTGCAGCGCGCCCGCTCCGACATCCGTTTGTCCGCCTCCGACCGCCTCGAGTGTCTCATGCTCTCTCGTCGATCGGTTTCTGACCTTCAAACCACCGTTCGATCGAATTTTGTGGGGGTGTCGGATGACGGTGGCGCCGTCGTGCCGATGCAGGTCAAGTTTCGATTGCCGAGGGCAGAGTTTGAGAGGCTGACGAAGGAATGTAAGAGCAAGGTGGAGGCGGCGGAGAGGATTGTAGATTTTTGCATGAGAGACAACGGTGGCCACGACGACCAAGATGATAGGTTGTGGAAGATGGGTGGCGCGTGTAGTGGTAATAAAGCGCGTGAGTTATTGTATACTTAA MGNTMGGGSRRRKRTTKVMKINGETIKITTPTTASQVTSHYPNHSLYESQSIKQFGLRAKPLDPHHQLKPKTLYFLLQLPSLPGDHRPLQRARSDIRLSASDRLECLMLSRRSVSDLQTTVRSNFVGVSDDGGAVVPMQVKFRLPRAEFERLTKECKSKVEAAERIVDFCMRDNGGHDDQDDRLWKMGGACSGNKARELLYT Homology
BLAST of Spg038825 vs. NCBI nr
Match: XP_038887072.1 (uncharacterized protein At1g66480-like [Benincasa hispida]) HSP 1 Score: 273.9 bits (699), Expect = 1.1e-69 Identity = 149/205 (72.68%), Postives = 165/205 (80.49%), Query Frame = 0
BLAST of Spg038825 vs. NCBI nr
Match: KAE8650631.1 (hypothetical protein Csa_011666, partial [Cucumis sativus]) HSP 1 Score: 248.8 bits (634), Expect = 3.9e-62 Identity = 135/195 (69.23%), Postives = 156/195 (80.00%), Query Frame = 0
BLAST of Spg038825 vs. NCBI nr
Match: KAG7036702.1 (hypothetical protein SDJN02_00322, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 248.8 bits (634), Expect = 3.9e-62 Identity = 136/201 (67.66%), Postives = 146/201 (72.64%), Query Frame = 0
BLAST of Spg038825 vs. NCBI nr
Match: KAG6607003.1 (hypothetical protein SDJN03_00345, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 247.3 bits (630), Expect = 1.1e-61 Identity = 137/199 (68.84%), Postives = 149/199 (74.87%), Query Frame = 0
BLAST of Spg038825 vs. NCBI nr
Match: XP_022948507.1 (uncharacterized protein At1g66480-like [Cucurbita moschata]) HSP 1 Score: 246.5 bits (628), Expect = 1.9e-61 Identity = 137/198 (69.19%), Postives = 148/198 (74.75%), Query Frame = 0
BLAST of Spg038825 vs. ExPASy Swiss-Prot
Match: Q6NLC8 (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana OX=3702 GN=At1g66480 PE=2 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 4.3e-27 Identity = 75/186 (40.32%), Postives = 109/186 (58.60%), Query Frame = 0
BLAST of Spg038825 vs. ExPASy TrEMBL
Match: A0A0A0L7W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G368690 PE=4 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 5.0e-63 Identity = 136/196 (69.39%), Postives = 157/196 (80.10%), Query Frame = 0
BLAST of Spg038825 vs. ExPASy TrEMBL
Match: A0A6J1G9F9 (uncharacterized protein At1g66480-like OS=Cucurbita moschata OX=3662 GN=LOC111452165 PE=4 SV=1) HSP 1 Score: 246.5 bits (628), Expect = 9.4e-62 Identity = 137/198 (69.19%), Postives = 148/198 (74.75%), Query Frame = 0
BLAST of Spg038825 vs. ExPASy TrEMBL
Match: A0A6J1K9N3 (uncharacterized protein At1g66480-like OS=Cucurbita maxima OX=3661 GN=LOC111492930 PE=4 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 6.1e-61 Identity = 135/198 (68.18%), Postives = 147/198 (74.24%), Query Frame = 0
BLAST of Spg038825 vs. ExPASy TrEMBL
Match: A0A5A7V2M4 (Putative Encodes a protein whose expression is responsive to nematode infection OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00470 PE=4 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 1.8e-49 Identity = 111/158 (70.25%), Postives = 126/158 (79.75%), Query Frame = 0
BLAST of Spg038825 vs. ExPASy TrEMBL
Match: A0A1S3C4W5 (uncharacterized protein At1g66480 OS=Cucumis melo OX=3656 GN=LOC103496878 PE=4 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 5.4e-49 Identity = 108/154 (70.13%), Postives = 122/154 (79.22%), Query Frame = 0
BLAST of Spg038825 vs. TAIR 10
Match: AT2G01340.1 (Encodes a protein whose expression is responsive to nematode infection. ) HSP 1 Score: 129.4 bits (324), Expect = 3.2e-30 Identity = 76/171 (44.44%), Postives = 107/171 (62.57%), Query Frame = 0
BLAST of Spg038825 vs. TAIR 10
Match: AT1G66480.1 (plastid movement impaired 2 ) HSP 1 Score: 122.9 bits (307), Expect = 3.0e-28 Identity = 75/186 (40.32%), Postives = 109/186 (58.60%), Query Frame = 0
BLAST of Spg038825 vs. TAIR 10
Match: AT1G71015.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01340.1); Has 85 Blast hits to 85 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 120.9 bits (302), Expect = 1.1e-27 Identity = 77/199 (38.69%), Postives = 115/199 (57.79%), Query Frame = 0
BLAST of Spg038825 vs. TAIR 10
Match: AT5G37840.1 (BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 118.6 bits (296), Expect = 5.7e-27 Identity = 85/207 (41.06%), Postives = 119/207 (57.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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