Spg038808 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg038808
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionstructure-specific endonuclease subunit slx1
Locationscaffold12: 5122550 .. 5124623 (+)
RNA-Seq ExpressionSpg038808
SyntenySpg038808
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCCAGTCTCGAACCCGCGCCAAGGGGAAGGAACCAAATGAGACTGCTCTCTCAGACATTTCGTTGCCAAAAACCCCCAATTTCAAATCCAGAAGTTTCGAAACCTTCTTCTTCGTCGACCAAGGATCCATCGCCTGCGACATTGATCGTCAAATCAAAGCCGAAGCCGAAGCAATGGTGTGCATATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTTGGGGTCACCCTCGACTTTGATCGACGGTATGTCCGATTTCTTCTGTTGGGTTTCTCCTTTGAAGAACAGATTTCATGAATTGATGTTGAAATTTTATCTGGGTCGTGTTCGATTAGCCTTGCCAAGTGATTTTGCGAGCTTTTAGCTTATCAATTTGACTTGATACAGTTAAATCATCGATCGGTCCAAAAATTTAAGCTGATGAGTTACGATTGTGGAAGTTGAACAAGTGGTTTTTAATATTAATTGGGTAGGAAATGAAAAGGTTCGGACATTGAATGGCTACTGTGATGCTATGTTAGCTAAAGTGAGCATAGCTCAACCGTAATTGACCTTTAACCAAGAGGTTAGAGGTTCAAATCCACTCACTCCGAATATTGTTGAACTCAAAAAAAATATTGTGATGCTACATTAAATTAGCAATAAATTCAAAATATTAAGCCTAAGTTGATGGGTTGTGATAAATTTAGTATTTTAACCTAAGAAGCACGGATACGGACACGTGACATGGATACAACACACAGTGAGACGTCATTTTTTTAAAATCTAGGACACGGACACGTTTAGTAAAATATACATTTTTAAAATATATATCATTTTGATACAAGAAGGAAATTCAAAATCAATAAGTTTATACATATGTATGCTTAAAAAATTGAGTATAATGTGTTTCACTCTCCATATTTCTTATTTTTATCATTTAGTATTGTGTCTATTTAATATATTTAACTAGTGTTCAATATGGACCTATATTGACTTTGTACAACTAGTGTTTGCCATATTTCACTTGTGCTAACGGTGTATCCAAGTGTCCGACACGTGTCGAACAAGGTCACACTAGCCAAACTAAAGTTTCCGTGCTTCTTAGATTTTAACACATATTTGGGTGAAATAGTGCCTTTTTTTTTCTTGAAGAAACACGCTTGAATTGTGTCGCTTGTTATGGATATAAGTATAACATGTTACCAATCAATTTGTTGCAAGAAGATGAGGTTTATCTTAGAAAAAGAAAACTTGGGTTTAGTTTTTTTATTTATAGTTTCCAAGTTGAACTGCTTGATTAATCAGTTGAGATATTGTTTTTTTTTTTAATGAGTTTGTAAGTTGGAGAGTGTTTTGGGATCATCTCAAAACTGTTGTTGTATTTTAGAAGTTATGTTTTGAGAGGATAGTGGAGGTGGAGGGAAGAGAAGCTTCACCAAGTGTGAATATGTTTCTGACTCAAAAGCAGTGATCATTTCTCCAAGATGAAGTATTGTTCAAGATGTTTTATGGATCATATTAAGAGATGTGCTTCAAATGTTTTTTTTTTTCCAGATCCTATCCTCTAGTGAATTCCTCTGCCAAAGAAATTTGCAATTTGCAACTTTTTCATGTCCTTTATGCATAAGAAGAGGTATTCAAATATTTCTTGATGTCATAAAGGTGTATTCTTGTACAGTTTGAAACAACACAATGGTGAAATAAAAGGTGGTGCGAAAGCAACTCGAGCGGGACGACCCTGGGTCTGTGCATGCACAATTCATGGCTTTAAAGACCAAAGTGAAGGTATGCATTTGAAATATAATTTCTAGAATCTTGCAGCAGTTAGAAACTATGTTGCTTTGGCTTCTGGAACCATGTGATATTTTCTATTTTCTTTGTAGTGGCAGTGACCTTGCTATGTTAGATAAGGACGGTTGGATGTATTTCATGTTTTCTGGTATTGTGAGAACTATTTCCCCAAGAAACGAAGTTTATTCGTTGCTCTTTCCCAACATTTATTATAAGATTCATTTTTTGATGGGAGCTTACACAATACACAGACGTCTAAGTTAGAATTGAGCTCAATTATTACTCTTTAAAACT

mRNA sequence

ATGAGACTGCTCTCTCAGACATTTCGTTGCCAAAAACCCCCAATTTCAAATCCAGAAGTTTCGAAACCTTCTTCTTCGTCGACCAAGGATCCATCGCCTGCGACATTGATCGTCAAATCAAAGCCGAAGCCGAAGCAATGGTGTGCATATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTTGGGGTCACCCTCGACTTTGATCGACGTTTGAAACAACACAATGGTGAAATAAAAGGTGGTGCGAAAGCAACTCGAGCGGGACGACCCTGGGTCTGTGCATGCACAATTCATGGCTTTAAAGACCAAAGTGAAGGTATGCATTTGAAATATAATTTCTAG

Coding sequence (CDS)

ATGAGACTGCTCTCTCAGACATTTCGTTGCCAAAAACCCCCAATTTCAAATCCAGAAGTTTCGAAACCTTCTTCTTCGTCGACCAAGGATCCATCGCCTGCGACATTGATCGTCAAATCAAAGCCGAAGCCGAAGCAATGGTGTGCATATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTTGGGGTCACCCTCGACTTTGATCGACGTTTGAAACAACACAATGGTGAAATAAAAGGTGGTGCGAAAGCAACTCGAGCGGGACGACCCTGGGTCTGTGCATGCACAATTCATGGCTTTAAAGACCAAAGTGAAGGTATGCATTTGAAATATAATTTCTAG

Protein sequence

MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEGMHLKYNF
Homology
[Close]
BLAST of Spg038808 vs. NCBI nr
Match: XP_004151512.1 (structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypothetical protein Csa_001754 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 9.4e-45
Identity = 94/109 (86.24%), Postives = 99/109 (90.83%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKP--KQWCAYLIISSNSP 60
           MRLLS TFRC KPPISNP +SK SSSS+KDP   TLIVKS+PKP  KQWC YLIISSNSP
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDP---TLIVKSEPKPKLKQWCVYLIISSNSP 60

Query: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSE 108
           IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CACTIHGFKDQS+
Sbjct: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQ 106

[Close]
BLAST of Spg038808 vs. NCBI nr
Match: XP_008461838.1 (PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_008461839.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 1.6e-44
Identity = 93/108 (86.11%), Postives = 98/108 (90.74%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVK-SKPKPKQWCAYLIISSNSPI 60
           MRLLSQTFRCQKPPISNP + K SSSSTK P   TLIVK  +PKPKQWC YLIISSNSPI
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGP---TLIVKLEEPKPKQWCVYLIISSNSPI 60

Query: 61  KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSE 108
           KTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPW+CACTIHGFKDQS+
Sbjct: 61  KTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQ 105

[Close]
BLAST of Spg038808 vs. NCBI nr
Match: XP_038903986.1 (structure-specific endonuclease subunit slx1 isoform X3 [Benincasa hispida])

HSP 1 Score: 187.6 bits (475), Expect = 6.1e-44
Identity = 92/111 (82.88%), Postives = 97/111 (87.39%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIK 60
           MRLLSQTFR QKP  SN ++SK SSSSTKDP    LIVKS+PKPKQWC YLIISSNSPIK
Sbjct: 1   MRLLSQTFRTQKPSNSNSQLSKSSSSSTKDP---ILIVKSEPKPKQWCVYLIISSNSPIK 60

Query: 61  TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEGMHL 112
           TYVGVTLDFDRRLKQHNGEIKGGAKATR GRPW+CACTIHGFKDQ +G  L
Sbjct: 61  TYVGVTLDFDRRLKQHNGEIKGGAKATRTGRPWLCACTIHGFKDQGQGFFL 108

[Close]
BLAST of Spg038808 vs. NCBI nr
Match: XP_038903985.1 (structure-specific endonuclease subunit slx1 isoform X2 [Benincasa hispida])

HSP 1 Score: 186.0 bits (471), Expect = 1.8e-43
Identity = 91/108 (84.26%), Postives = 96/108 (88.89%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIK 60
           MRLLSQTFR QKP  SN ++SK SSSSTKDP    LIVKS+PKPKQWC YLIISSNSPIK
Sbjct: 1   MRLLSQTFRTQKPSNSNSQLSKSSSSSTKDP---ILIVKSEPKPKQWCVYLIISSNSPIK 60

Query: 61  TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEG 109
           TYVGVTLDFDRRLKQHNGEIKGGAKATR GRPW+CACTIHGFKDQ +G
Sbjct: 61  TYVGVTLDFDRRLKQHNGEIKGGAKATRTGRPWLCACTIHGFKDQGQG 105

[Close]
BLAST of Spg038808 vs. NCBI nr
Match: KAG7018060.1 (slx1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184.5 bits (467), Expect = 5.2e-43
Identity = 91/107 (85.05%), Postives = 97/107 (90.65%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIK 60
           MRLLSQTFR QK PIS+PEVSK SSSSTK P   TLIVKS+P+PK+WC YLIISSN PIK
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVP---TLIVKSEPEPKKWCVYLIISSNPPIK 60

Query: 61  TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSE 108
           TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CAC IHGFKDQS+
Sbjct: 61  TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQ 104

[Close]
BLAST of Spg038808 vs. ExPASy Swiss-Prot
Match: B6JY16 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) OX=402676 GN=slx1 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-12
Identity = 30/68 (44.12%), Postives = 44/68 (64.71%), Query Frame = 0 

Query: 47  WCAYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQ 106
           +C YL++S  +  ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +
Sbjct: 3   YCCYLLVSEKAASRSVYIGSTPDPARRLRQHNGEIKGGAYKTKRSRPWKVACFVHGFPTK 62

Query: 107 SEGMHLKY 114
              +  ++
Sbjct: 63  IAALQFEW 70

[Close]
BLAST of Spg038808 vs. ExPASy Swiss-Prot
Match: Q9P7M3 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=slx1 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.1e-11
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 0 

Query: 47  WCAYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKD 106
           +C YL+ S  + S    Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C ++GF +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSISCLVYGFPN 66

Query: 107 QSEGMHLKYNF 116
           +   +  ++N+
Sbjct: 67  KVSALKFEWNW 77

[Close]
BLAST of Spg038808 vs. ExPASy Swiss-Prot
Match: B8MDD1 (Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) OX=441959 GN=slx1 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.0e-10
Identity = 31/80 (38.75%), Postives = 45/80 (56.25%), Query Frame = 0 

Query: 38  VKSKPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWVC 97
           V +KP P  +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T     RPW  
Sbjct: 10  VLTKPIPAFYCCYLLRSAKRPSALYIGSTPDPARRLEQHNGFAKGGAKRTERNTLRPWEM 69

Query: 98  ACTIHGFKDQSEGMHLKYNF 116
              + GF  ++  +  ++++
Sbjct: 70  VAIVEGFPSRTGALQFEWSW 89

[Close]
BLAST of Spg038808 vs. ExPASy Swiss-Prot
Match: B6QFH5 (Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) OX=441960 GN=slx1 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-09
Identity = 31/77 (40.26%), Postives = 42/77 (54.55%), Query Frame = 0 

Query: 41  KPKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWVCACT 100
           KP P  +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T     RPW     
Sbjct: 13  KPIPAFYCCYLLRSVKKPSSLYIGSTPDPARRLEQHNGFTKGGAKRTERDTLRPWEMITI 72

Query: 101 IHGFKDQSEGMHLKYNF 116
           I GF  ++  +  ++++
Sbjct: 73  IEGFTSRTGALQFEWSW 89

[Close]
BLAST of Spg038808 vs. ExPASy Swiss-Prot
Match: A8PWH1 (Structure-specific endonuclease subunit SLX1 OS=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) OX=425265 GN=SLX1 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.7e-09
Identity = 26/72 (36.11%), Postives = 42/72 (58.33%), Query Frame = 0 

Query: 44  PKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFK 103
           P+ +  Y + S + P +TY+G T D  RRL+QHNG +K GA  TR  RPW     ++GF 
Sbjct: 12  PRVYVCYCLRSLSRPNQTYIGSTPDPIRRLRQHNGLVKQGAFYTRMARPWTMDVVVYGFP 71

Query: 104 DQSEGMHLKYNF 116
            +   +  ++++
Sbjct: 72  SKLAALQFEWSW 83

[Close]
BLAST of Spg038808 vs. ExPASy TrEMBL
Match: A0A0A0LCZ9 (GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.6e-45
Identity = 94/109 (86.24%), Postives = 99/109 (90.83%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKP--KQWCAYLIISSNSP 60
           MRLLS TFRC KPPISNP +SK SSSS+KDP   TLIVKS+PKP  KQWC YLIISSNSP
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDP---TLIVKSEPKPKLKQWCVYLIISSNSP 60

Query: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSE 108
           IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CACTIHGFKDQS+
Sbjct: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQ 106

[Close]
BLAST of Spg038808 vs. ExPASy TrEMBL
Match: A0A1S3CFH5 (structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC103500344 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.8e-45
Identity = 93/108 (86.11%), Postives = 98/108 (90.74%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVK-SKPKPKQWCAYLIISSNSPI 60
           MRLLSQTFRCQKPPISNP + K SSSSTK P   TLIVK  +PKPKQWC YLIISSNSPI
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGP---TLIVKLEEPKPKQWCVYLIISSNSPI 60

Query: 61  KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSE 108
           KTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPW+CACTIHGFKDQS+
Sbjct: 61  KTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQ 105

[Close]
BLAST of Spg038808 vs. ExPASy TrEMBL
Match: A0A6J1F1V2 (structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LOC111441428 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.5e-43
Identity = 91/107 (85.05%), Postives = 97/107 (90.65%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIK 60
           MRLLSQTFR QK PIS+PEVSK SSSSTK P   TLIVKS+P+PK+WC YLIISSN PIK
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVP---TLIVKSEPEPKKWCVYLIISSNPPIK 60

Query: 61  TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSE 108
           TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CAC IHGFKDQS+
Sbjct: 61  TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQ 104

[Close]
BLAST of Spg038808 vs. ExPASy TrEMBL
Match: A0A6J1J559 (structure-specific endonuclease subunit slx1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481456 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.1e-42
Identity = 88/108 (81.48%), Postives = 96/108 (88.89%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIK 60
           MRLLSQTFR QK PIS+PEVSK SSSSTK P   TL +KS+P+ K+WC YLIISSN PIK
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVP---TLTIKSEPETKKWCVYLIISSNPPIK 60

Query: 61  TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEG 109
           TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CAC IHGFK+QS+G
Sbjct: 61  TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKNQSQG 105

[Close]
BLAST of Spg038808 vs. ExPASy TrEMBL
Match: A0A6J1J5C9 (structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481456 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.0e-41
Identity = 87/107 (81.31%), Postives = 95/107 (88.79%), Query Frame = 0 

Query: 1   MRLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKPKQWCAYLIISSNSPIK 60
           MRLLSQTFR QK PIS+PEVSK SSSSTK P   TL +KS+P+ K+WC YLIISSN PIK
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVP---TLTIKSEPETKKWCVYLIISSNPPIK 60

Query: 61  TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSE 108
           TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CAC IHGFK+QS+
Sbjct: 61  TYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKNQSQ 104

[Close]
BLAST of Spg038808 vs. TAIR 10
Match: AT5G43210.1 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 110.5 bits (275), Expect = 8.8e-25
Identity = 59/107 (55.14%), Postives = 71/107 (66.36%), Query Frame = 0 

Query: 2   RLLSQTFRCQKPPISN---PEVSKPSSSSTKDPSPATLIVKSK---PKPKQWCAYLIISS 61
           RLLS+TF   K   SN   PE     +S T+ P P++   +     PK K W  YLI+S+
Sbjct: 3   RLLSRTFPSVKLRDSNPKAPEFKNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLILST 62

Query: 62  NSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGF 103
             PIKTYVG+T DF RRLKQHNGEI+GGAKA+ AGRPW+CAC I GF
Sbjct: 63  TEPIKTYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGF 109

[Close]
BLAST of Spg038808 vs. TAIR 10
Match: AT2G30350.2 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 53.9 bits (128), Expect = 9.8e-08
Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 0 

Query: 45  KQWCAYLIISSNSPI---KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHG 104
           K + A  +++S SP    +TY+G T++  RR++QHNGEI  GA  T+  RPW     I+G
Sbjct: 25  KGFFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYG 84

Query: 105 FKDQSEGMHLKY 114
           F      +  ++
Sbjct: 85  FPTNVSALQFEW 96

The following BLAST results are available for this feature:
BLAST of Spg038808 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004151512.19.4e-4586.24structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypot... [more]
XP_008461838.11.6e-4486.11PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_00846... [more]
XP_038903986.16.1e-4482.88structure-specific endonuclease subunit slx1 isoform X3 [Benincasa hispida][more]
XP_038903985.11.8e-4384.26structure-specific endonuclease subunit slx1 isoform X2 [Benincasa hispida][more]
KAG7018060.15.2e-4385.05slx1, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Spg038808 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B6JY166.4e-1244.12Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (s... [more]
Q9P7M34.1e-1142.25Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strai... [more]
B8MDD16.0e-1038.75Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain A... [more]
B6QFH52.3e-0940.26Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain AT... [more]
A8PWH18.7e-0936.11Structure-specific endonuclease subunit SLX1 OS=Malassezia globosa (strain ATCC ... [more]
BLAST of Spg038808 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCZ94.6e-4586.24GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=... [more]
A0A1S3CFH57.8e-4586.11structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC10350... [more]
A0A6J1F1V22.5e-4385.05structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1J5598.1e-4281.48structure-specific endonuclease subunit slx1 isoform X2 OS=Cucurbita maxima OX=3... [more]
A0A6J1J5C94.0e-4181.31structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3... [more]
BLAST of Spg038808 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G43210.18.8e-2555.14Excinuclease ABC, C subunit, N-terminal [more]
AT2G30350.29.8e-0836.11Excinuclease ABC, C subunit, N-terminal [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000305GIY-YIG endonucleasePFAMPF01541GIY-YIGcoord: 46..109
e-value: 3.9E-10
score: 39.9
IPR000305GIY-YIG endonucleasePROSITEPS50164GIY_YIGcoord: 45..115
score: 14.034295
IPR035901GIY-YIG endonuclease superfamilyGENE3D3.40.1440.10coord: 41..115
e-value: 4.2E-17
score: 63.9
IPR035901GIY-YIG endonuclease superfamilySUPERFAMILY82771GIY-YIG endonucleasecoord: 46..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
NoneNo IPR availablePANTHERPTHR20208STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1coord: 21..112
NoneNo IPR availablePANTHERPTHR20208:SF13EMB|CAB76036.1coord: 21..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg038808.1Spg038808.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
cellular_component GO:0033557 Slx1-Slx4 complex
molecular_function GO:0017108 5'-flap endonuclease activity
molecular_function GO:0008821 crossover junction endodeoxyribonuclease activity