Spg038656 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg038656
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold12: 436578 .. 439140 (+)
RNA-Seq ExpressionSpg038656
SyntenySpg038656
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCTGCTTTTGCATTGGCGGTCAATTCCATCTGGAATGTGGAAAATCAATTGTGATGCCGCCTGGAACGAAGGTCAGGACCGAGGTGGTATTGGCTGGATTCTCCGACGGTGGGACGGTTCTCCGGTGTCAGCGGGTCTCAGGAGCATCAACTGCCAAAGGAACATCAAGTGGCTGGAAGCCCTTGCAGCGGTCGACGGTCTCAATTCGGTGTCAATCAACTCTCCTAGAGTGATTCTTGAGATGGATTCCCTTCAAGTCGTGAACCTGCTCACGGGAAGAGATGAGGATATCACTAAGATTGTCTATCTGGTGCGGGAAGCCAAGAGTCGTATAGCTTCCCTCCAGATGGATTCGGTTGTTCACACTCCAAGAAGATACAATAATATGGCCCACATTTTGGCTAGAAGGGCTTGTGATCTTAATATATCTATGAGTTGGTGTAATTTTTTCCCTTCTTGGTTGATTTCTTTAAACAATATTGACATTGGTGTGGAAAATCACATAAGTGGGGGTGCCTGTCCCATTATGGATAACCCTATGAGGGGTTTTTGTTTAGTTTTGTGGAAGTATTATTTTCTCAAAATATATATATATATATATATATAAATGGTTGGTTTATTCGAGGAAAAGGATCCATTTTAATGGTTGAGAATTGGACTGAAGACAATTTTTACCATAAATTCTTTAATTAGAATTAGATAAGTGATGCAATACATACCTTCAATTAAGCTTTCATTTTGAACTAATGTCACAAAATATTCTCATGTGTTAAATGGATTACAAACATGAGCGGGTACAAAATTTAATGAGATTTCGAAGAAAATCCATTTATATAGAGCTAAATTTTTGTTAAATTTGGTATATATATACAGTTGAATATGAATCAAATTCATATTTTAAATTTAATATTCAAACCATTTCGAATATTCAATTCCCCTTGAGTAAATTTACCTCAATGCCCTAAATGAGCTACCGGTGGGACCTTATGGACCTACAGTTTAGAAGCTCCAACGATATGAGATTAATTGACTAAACTCATTAATCAATTAACCAATATTTGTTAACTGTGGTTCACTCCACTATAGAACCACAACTGCACTCTTTTGACTGCATATATATTTCTGTGTCCATGGATATTGACCAATAACAGTAAGTTAGTCCTTCACGTGTGTTCGTAACTCCAGCTAGGTCAAATTACCGTTTTACCGCTGGGTTACCTCTACCTCCTTAAGTACCAATGCTCCTCTAATGAACAACCTATTTGAGGCCCAACCATCAAATAGAAAACCCCTCTCGGGGCCAGTGAGAGGGTAGAGCCCTTTGTTCAAGACCCGGAGACACCACTTAAGGGAACACACATCTACTTACCCTAAATTCGGGAAGGATTGAATTTCTTCTTGTGTGATTATGTTCCCAGCTCCCCACTCGGTCTTGTCCCCAAAATGGTATGCTTATTGAGTCGGCGTGCAGGCCATTCTCACCCATACAAATCAAAAGACAATCTCTTGTGAACATGAGTCCATAACCCACTCAGGATTGAGACTAAGTTGCCTAGGTCATCCTAGTGAAATAGAAACCTAACTAGTCAATAGTGTTACAGCTAGTGGTTAACTATTTCGCGGTCCGGTCTTATGCAAACTCATTGCACAGGATACCCCCACTCACATGTCCCCTACACGAATGCGTTGGATCATTGCGTTTGTATCATAATACCAAGCGGGTCGTATCCATAGTGTCACCAAGATAAGGTACCCAGCCTCATCCCTATACTATAGACCCTTTAGGTTGTAACTTGAACAACGATCCCCGTATGTCCCCACATACAAGTTCAAGTCTCATACTAACAACCTAGGATGTTCAGTTTATTGGATTAGGGTTATTAGGGCAAGATATACGCAATACAAACAATAATAAATGAACAATACATGAATTATCACTTTATTAATGTTCGGTCAAATGTTTTTTACTATCCACGAGTTTTAGGGCATAAAATCCAACAGTTACAACTCTTGAAATGACAATAGGTTACTCTAGAGTTTCATTTTGAGGCTATAAAAAGCCATGTATGTTGTATTTGCAAATAAGACTTGGAAATGTAGTAAAATAGGCCTTTGTGCTTTTCCTTTAGCCGAGAGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGCTGAGAATCATTCAAGCTTGACTTGATCAATCATGCTTGTGGAGTGATTCGAATCTCAAACAAGGTTTCTTGCTTTGAGATATTTGATCGATAAGGTAATACAGTTTTTACTTTCCTTGTGTTGATTTTCAAATCAGTTTTGGGGTTTTCAGATTTGAGATTTAAAGGTCTTGTTTTTTAGCAAGGTTGTTAGATACATTTCCTGGAAGTTTCATAACACTGCCTGTATTTTCGCAGCCAACGGTGCGTGAGTTGTTGTGTCAATCATTTCCAATGCACACTATATGTTTTCGTCAGGTCTGTTCACCACTGCTCCAATTCTTGTGCCTTCATCACCCATGCTCATCGATGCATCCGTATACAAATTAAACTCTGTCACATGA

mRNA sequence

ATGGCGCTGCTTTTGCATTGGCGGTCAATTCCATCTGGAATGTGGAAAATCAATTGTGATGCCGCCTGGAACGAAGGTCAGGACCGAGGTGGTATTGGCTGGATTCTCCGACGGTGGGACGGTTCTCCGGTGTCAGCGGGTCTCAGGAGCATCAACTGCCAAAGGAACATCAAGTGGCTGGAAGCCCTTGCAGCGGTCGACGGTCTCAATTCGGTGTCAATCAACTCTCCTAGAGTGATTCTTGAGATGGATTCCCTTCAAGTCGTGAACCTGCTCACGGGAAGAGATGAGGATATCACTAAGATTGTCTATCTGGTGCGGGAAGCCAAGAGTCGTATAGCTTCCCTCCAGATGGATTCGGTTGTTCACACTCCAAGAAGATACAATAATATGGCCCACATTTTGGCTAGAAGGGCTTGTGATCTTAATATATCTATGAGTTGGTGTAATTTTTTCCCTTCTTGGTTGATTTCTTTAAACAATATTGACATTGGTGTGGAAAATCACATAAGTGGGGGTGCCTGTCCCATTATGGATAACCCTATGAGGGGTCTGTTCACCACTGCTCCAATTCTTGTGCCTTCATCACCCATGCTCATCGATGCATCCGTATACAAATTAAACTCTGTCACATGA

Coding sequence (CDS)

ATGGCGCTGCTTTTGCATTGGCGGTCAATTCCATCTGGAATGTGGAAAATCAATTGTGATGCCGCCTGGAACGAAGGTCAGGACCGAGGTGGTATTGGCTGGATTCTCCGACGGTGGGACGGTTCTCCGGTGTCAGCGGGTCTCAGGAGCATCAACTGCCAAAGGAACATCAAGTGGCTGGAAGCCCTTGCAGCGGTCGACGGTCTCAATTCGGTGTCAATCAACTCTCCTAGAGTGATTCTTGAGATGGATTCCCTTCAAGTCGTGAACCTGCTCACGGGAAGAGATGAGGATATCACTAAGATTGTCTATCTGGTGCGGGAAGCCAAGAGTCGTATAGCTTCCCTCCAGATGGATTCGGTTGTTCACACTCCAAGAAGATACAATAATATGGCCCACATTTTGGCTAGAAGGGCTTGTGATCTTAATATATCTATGAGTTGGTGTAATTTTTTCCCTTCTTGGTTGATTTCTTTAAACAATATTGACATTGGTGTGGAAAATCACATAAGTGGGGGTGCCTGTCCCATTATGGATAACCCTATGAGGGGTCTGTTCACCACTGCTCCAATTCTTGTGCCTTCATCACCCATGCTCATCGATGCATCCGTATACAAATTAAACTCTGTCACATGA

Protein sequence

MALLLHWRSIPSGMWKINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEALAAVDGLNSVSINSPRVILEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQMDSVVHTPRRYNNMAHILARRACDLNISMSWCNFFPSWLISLNNIDIGVENHISGGACPIMDNPMRGLFTTAPILVPSSPMLIDASVYKLNSVT
Homology
BLAST of Spg038656 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 115.2 bits (287), Expect = 7.1e-22
Identity = 62/154 (40.26%), Postives = 89/154 (57.79%), Query Frame = 0

Query: 5   LHWRSIPSGMWKINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEALA 64
           L W   P  +W +N DA+W++   RGGIGWI+R WDG  V AG R +    N+K LEA A
Sbjct: 69  LKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASA 128

Query: 65  AVDGL-NSVSINSPRVI-LEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQMDSVV 124
            ++GL N  ++   R + +E DS +V +LL  + ED+TK  ++V E  +   S ++ +  
Sbjct: 129 ILEGLRNLTNLGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFA 188

Query: 125 HTPRRYNNMAHILARRACDLNISMSWCNFFPSWL 157
              R  N  AH LA+RA  L  SM W + FP+WL
Sbjct: 189 KVGRETNGCAHSLAQRASVLRESMIWVDCFPNWL 222

BLAST of Spg038656 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 8.1e-18
Identity = 53/136 (38.97%), Postives = 80/136 (58.82%), Query Frame = 0

Query: 7   WRSIPSGMWKINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEALAAV 66
           W+   S  WK+N +AAW    + GGIGWILR   G  + A  R I  +RNI +LE +A  
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 67  DGLNSVSINSPRVI-LEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQMDSVVHTP 126
           +GL ++     R I LE DSL+ ++LL  + +D T+I++L+ E    +  +++ S+ H  
Sbjct: 139 EGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHIS 198

Query: 127 RRYNNMAHILARRACD 142
           R  N +AH LARRA +
Sbjct: 199 REANKVAHGLARRAME 214

BLAST of Spg038656 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 3.1e-17
Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 0

Query: 7   WRSIPSGMWKINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEALAAV 66
           W+   S  WK+N DAAW    + GGIGWILR   G  + A  R I  +RNI +LE +A  
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 67  DGLNSVSINSPRVI---------LEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQ 126
           +GL ++     R I         LE DSL+ ++LL  + +D T+I++L+ E    +  ++
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMK 198

Query: 127 MDSVVHTPRRYNNMAHILARRACD 142
           + S+ H  R  N +AH LARRA +
Sbjct: 199 IVSMRHISREANKVAHDLARRAME 222

BLAST of Spg038656 vs. NCBI nr
Match: KAF4360260.1 (hypothetical protein F8388_020551 [Cannabis sativa] >KAF4393916.1 hypothetical protein G4B88_025885 [Cannabis sativa])

HSP 1 Score: 89.0 bits (219), Expect = 5.4e-14
Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 0

Query: 6   HWRSIPSGMWKINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEALAA 65
           HW   P+G   +NCDAA N G    G G+I R WDG  + AG+   N   ++   EA A 
Sbjct: 225 HWIRPPAGYIAVNCDAAMNSGAAGIGTGFIWRNWDGKLLIAGMNYSNRCCSVDMAEAWAI 284

Query: 66  VDGLNSV--SINSPRVILEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQMDSVVH 125
           ++ LN++  + +SP  I + D   +V+ +  +D  +T +  ++ + + ++  L  +S+VH
Sbjct: 285 LEALNNMPNTTDSPMEI-QSDCKHLVDKIMNQDNHLTAVNTIIHQIRMQMEKLNCNSIVH 344

Query: 126 TPRRYNNMAHILARRACDLNISMSWCNFFPSWLISLNNID 164
             R  N  AH+LAR+      +  + + FP WL      D
Sbjct: 345 VNRNNNECAHMLARKCLATKTTQIFTHPFPRWLAQFCTAD 383

BLAST of Spg038656 vs. NCBI nr
Match: XP_022148737.1 (uncharacterized protein LOC111017329 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 1.6e-13
Identity = 46/132 (34.85%), Postives = 79/132 (59.85%), Query Frame = 0

Query: 11  PSGMWKINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEALAAVDGLN 70
           P   WK+N DAAW+  Q  GG+GWI+R        AG ++I   R+I +LE +A   G+ 
Sbjct: 9   PDNFWKLNTDAAWHANQGVGGLGWIIRNEKREIKKAGGQTITDARDITYLELMAIWLGIE 68

Query: 71  S-VSINSPRVILEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQMDSVVHTPRRYN 130
           + VS +S  +I+E +SL+ ++L+ G  +++T+I++LV++ K+     ++    H  R  N
Sbjct: 69  AVVSSSSVSLIIESESLEAIHLIQGIQQNVTEILWLVQDIKNFGERARLKRFQHVQRDGN 128

Query: 131 NMAHILARRACD 142
           ++A  +A RA D
Sbjct: 129 SVAQEIANRAAD 140

BLAST of Spg038656 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.4e-22
Identity = 62/154 (40.26%), Postives = 89/154 (57.79%), Query Frame = 0

Query: 5   LHWRSIPSGMWKINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEALA 64
           L W   P  +W +N DA+W++   RGGIGWI+R WDG  V AG R +    N+K LEA A
Sbjct: 69  LKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASA 128

Query: 65  AVDGL-NSVSINSPRVI-LEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQMDSVV 124
            ++GL N  ++   R + +E DS +V +LL  + ED+TK  ++V E  +   S ++ +  
Sbjct: 129 ILEGLRNLTNLGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFA 188

Query: 125 HTPRRYNNMAHILARRACDLNISMSWCNFFPSWL 157
              R  N  AH LA+RA  L  SM W + FP+WL
Sbjct: 189 KVGRETNGCAHSLAQRASVLRESMIWVDCFPNWL 222

BLAST of Spg038656 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.9e-18
Identity = 53/136 (38.97%), Postives = 80/136 (58.82%), Query Frame = 0

Query: 7   WRSIPSGMWKINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEALAAV 66
           W+   S  WK+N +AAW    + GGIGWILR   G  + A  R I  +RNI +LE +A  
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 67  DGLNSVSINSPRVI-LEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQMDSVVHTP 126
           +GL ++     R I LE DSL+ ++LL  + +D T+I++L+ E    +  +++ S+ H  
Sbjct: 139 EGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHIS 198

Query: 127 RRYNNMAHILARRACD 142
           R  N +AH LARRA +
Sbjct: 199 REANKVAHGLARRAME 214

BLAST of Spg038656 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 0

Query: 7   WRSIPSGMWKINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEALAAV 66
           W+   S  WK+N DAAW    + GGIGWILR   G  + A  R I  +RNI +LE +A  
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 67  DGLNSVSINSPRVI---------LEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQ 126
           +GL ++     R I         LE DSL+ ++LL  + +D T+I++L+ E    +  ++
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMK 198

Query: 127 MDSVVHTPRRYNNMAHILARRACD 142
           + S+ H  R  N +AH LARRA +
Sbjct: 199 IVSMRHISREANKVAHDLARRAME 222

BLAST of Spg038656 vs. ExPASy TrEMBL
Match: A0A7J6ERF5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020551 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-14
Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 0

Query: 6   HWRSIPSGMWKINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEALAA 65
           HW   P+G   +NCDAA N G    G G+I R WDG  + AG+   N   ++   EA A 
Sbjct: 225 HWIRPPAGYIAVNCDAAMNSGAAGIGTGFIWRNWDGKLLIAGMNYSNRCCSVDMAEAWAI 284

Query: 66  VDGLNSV--SINSPRVILEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQMDSVVH 125
           ++ LN++  + +SP  I + D   +V+ +  +D  +T +  ++ + + ++  L  +S+VH
Sbjct: 285 LEALNNMPNTTDSPMEI-QSDCKHLVDKIMNQDNHLTAVNTIIHQIRMQMEKLNCNSIVH 344

Query: 126 TPRRYNNMAHILARRACDLNISMSWCNFFPSWLISLNNID 164
             R  N  AH+LAR+      +  + + FP WL      D
Sbjct: 345 VNRNNNECAHMLARKCLATKTTQIFTHPFPRWLAQFCTAD 383

BLAST of Spg038656 vs. ExPASy TrEMBL
Match: A0A803PLN3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.8e-14
Identity = 50/162 (30.86%), Postives = 85/162 (52.47%), Query Frame = 0

Query: 4    LLHWRSIPSGMWKINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEAL 63
            L HW   P+G   +NCDAA N G    G G+I R W+G  + AG+   +   +++  EA 
Sbjct: 1016 LKHWIRPPTGCISLNCDAAINTGTTGVGTGFIWREWEGKILLAGMVYSHSCCSVEMAEAW 1075

Query: 64   AAVDGLNSV--SINSPRVILEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQMDSV 123
            A ++ L     + N P + ++ D   +V+ +  RD++++ +  L+ + K R+ S   +++
Sbjct: 1076 AILEALKHQPHTTNIP-LEIQSDCKYIVDAIKDRDKNLSAVSTLMHQIKDRMESSNCNNI 1135

Query: 124  VHTPRRYNNMAHILARRACDLNISMSWCNFFPSWLISLNNID 164
            VH  R  NN AH+LAR+      +  + + FP WL S    D
Sbjct: 1136 VHVHRDNNNCAHMLARKCLATKTTQIFTHSFPRWLASFCKAD 1176

BLAST of Spg038656 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 9.5e-09
Identity = 46/153 (30.07%), Postives = 69/153 (45.10%), Query Frame = 0

Query: 7   WRSIPSGMWKINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNI--KWLEALA 66
           WR  P    K N DA WN   +R GIGW+LR   G     G R++   +++    LEA+ 
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR 479

Query: 67  -AVDGLNSVSINSPRVILEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQMDSVVH 126
            AV  L+    N   VI E DS  ++ +L   DE    +   +++ +  ++       V 
Sbjct: 480 WAVLSLSRFQYN--YVIFESDSQVLIEIL-NNDEIWPSLKPTIQDLQRLLSQFTEVKFVF 539

Query: 127 TPRRYNNMAHILARRACD-LNISMSWCNFFPSW 156
            PR  N +A  +AR +   LN      +  PSW
Sbjct: 540 IPREGNTLAERVARESLSFLNYDPKLYSIVPSW 569

BLAST of Spg038656 vs. TAIR 10
Match: AT1G52990.1 (thioredoxin family protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-07
Identity = 40/149 (26.85%), Postives = 65/149 (43.62%), Query Frame = 0

Query: 9   SIPSGMWKINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEALAAVDG 68
           S+PS   K N DA+ +EG    G+GW++R   G+ +  G+     +   +  E  A +  
Sbjct: 42  SVPSCRVKCNYDASHHEGDVVSGLGWLIRNSQGTVLECGMGKFQGRMTPEEAECSALIWA 101

Query: 69  LNSVS-INSPRVILEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQMDSVVHTPRR 128
           + + S     +VI E D+   VN L     D  ++ + +   KS I S      + T R 
Sbjct: 102 IQATSAFGYTKVIFEGDNSN-VNRLINTKSDNPRLKHYLDTIKSWIPSFTSTEFIFTHRE 161

Query: 129 YNNMAHILARRACDLNISMSWCNFFPSWL 157
            N  A  L ++A   +   S  N  P +L
Sbjct: 162 QNQCADTLVKKAIKSSTQWSLFNCCPHFL 189

BLAST of Spg038656 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-07
Identity = 41/155 (26.45%), Postives = 69/155 (44.52%), Query Frame = 0

Query: 5   LHWRSIPSGMWKINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEALA 64
           + WR+ P+   K N DA ++  +     GWI+R   G+P+S G   +    N    E  A
Sbjct: 324 IEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLEAETKA 383

Query: 65  AVDGLNSVSINS-PRVILEMDSLQVVNLLTGRDEDITKIVYL--VREAKSRIASLQMDSV 124
            +  L    I    +V +E D   ++NL+ G     +   +L  +    ++ AS+Q   +
Sbjct: 384 LLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSSLANHLEDISFWANKFASIQFGFI 443

Query: 125 VHTPRRYNNMAHILARRACDLNISMSWCNFFPSWL 157
               R+ N +AH+LA+  C  +   S     P WL
Sbjct: 444 ---RRKGNKLAHVLAKYGCTYSTFYSGSGSLPIWL 475

BLAST of Spg038656 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.4e-04
Identity = 36/156 (23.08%), Postives = 64/156 (41.03%), Query Frame = 0

Query: 11  PSGMWKINC--DAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEALAAVDG 70
           P G  K+ C  DA+ +E     G+GWILR   G+ +  G+     +   +  E    +  
Sbjct: 107 PPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLIWA 166

Query: 71  LN-SVSINSPRVILEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQMDSVVHTPRR 130
           +  S      +VI E D+  +  ++  +  +  ++ + +   +S I S +        R 
Sbjct: 167 IQASYGFGHKKVIFEGDNQTITRMINTKSSN-PRLQHFLDTIQSWIPSFESIEFSFKHRE 226

Query: 131 YNNMAHILARRACDLNISMSWCNFFPSWLISLNNID 164
            N  A  LA++A   N   S  +  P +L    N D
Sbjct: 227 QNGCADFLAKQAIKENTQWSLFHSCPYFLSPYVNND 261

BLAST of Spg038656 vs. TAIR 10
Match: AT3G23320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.4e-04
Identity = 37/155 (23.87%), Postives = 65/155 (41.94%), Query Frame = 0

Query: 11  PSGMW-KINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEALAAVDGL 70
           P   W K N D + + G+   G+ WI+R   G+ +  G      ++ IK  E  A +  +
Sbjct: 33  PGAEWVKCNYDVSNHAGRQDSGLRWIIRNSQGTCLDCGCGKFQGRQTIKEAECTALIWAI 92

Query: 71  NSV-SINSPRVILEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQMDSVVHTPRRY 130
                +   RV  E D++  VN L    E   ++ Y +   +    +          R  
Sbjct: 93  QCAWDLGYRRVEFEGDNI-TVNRLIRNKETNPRLRYYLEFIQQWSKAFTTVKFTFRHREQ 152

Query: 131 NNMAHILARRACDLNISMSWCNFFPSWLISLNNID 164
           N    +LA++A   +I+ +  +F P +L+S  N D
Sbjct: 153 NVCVDVLAKKAVANHINHTLYHFCPRFLMSFVNKD 186

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155262.17.1e-2240.26uncharacterized protein LOC111022403 [Momordica charantia][more]
XP_022143535.18.1e-1838.97uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_022156777.13.1e-1737.50uncharacterized protein LOC111023608 [Momordica charantia][more]
KAF4360260.15.4e-1430.63hypothetical protein F8388_020551 [Cannabis sativa] >KAF4393916.1 hypothetical p... [more]
XP_022148737.11.6e-1334.85uncharacterized protein LOC111017329 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DNV93.4e-2240.26uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1CP263.9e-1838.97uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DSV11.5e-1737.50uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A7J6ERF52.6e-1430.63Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020551 PE=4 SV=1[more]
A0A803PLN35.8e-1430.86Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G29090.19.5e-0930.07Ribonuclease H-like superfamily protein [more]
AT1G52990.11.1e-0726.85thioredoxin family protein [more]
AT3G09510.11.4e-0726.45Ribonuclease H-like superfamily protein [more]
AT5G65005.11.4e-0423.08Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT3G23320.12.4e-0423.87Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 13..142
e-value: 1.4E-14
score: 56.3
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 18..139
e-value: 3.7E-17
score: 62.3
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 6..156
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 6..156
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 17..137
e-value: 1.01754E-18
score: 76.584
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 13..148

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg038656.1Spg038656.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity