Spg038656 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGCTGCTTTTGCATTGGCGGTCAATTCCATCTGGAATGTGGAAAATCAATTGTGATGCCGCCTGGAACGAAGGTCAGGACCGAGGTGGTATTGGCTGGATTCTCCGACGGTGGGACGGTTCTCCGGTGTCAGCGGGTCTCAGGAGCATCAACTGCCAAAGGAACATCAAGTGGCTGGAAGCCCTTGCAGCGGTCGACGGTCTCAATTCGGTGTCAATCAACTCTCCTAGAGTGATTCTTGAGATGGATTCCCTTCAAGTCGTGAACCTGCTCACGGGAAGAGATGAGGATATCACTAAGATTGTCTATCTGGTGCGGGAAGCCAAGAGTCGTATAGCTTCCCTCCAGATGGATTCGGTTGTTCACACTCCAAGAAGATACAATAATATGGCCCACATTTTGGCTAGAAGGGCTTGTGATCTTAATATATCTATGAGTTGGTGTAATTTTTTCCCTTCTTGGTTGATTTCTTTAAACAATATTGACATTGGTGTGGAAAATCACATAAGTGGGGGTGCCTGTCCCATTATGGATAACCCTATGAGGGGTTTTTGTTTAGTTTTGTGGAAGTATTATTTTCTCAAAATATATATATATATATATATATAAATGGTTGGTTTATTCGAGGAAAAGGATCCATTTTAATGGTTGAGAATTGGACTGAAGACAATTTTTACCATAAATTCTTTAATTAGAATTAGATAAGTGATGCAATACATACCTTCAATTAAGCTTTCATTTTGAACTAATGTCACAAAATATTCTCATGTGTTAAATGGATTACAAACATGAGCGGGTACAAAATTTAATGAGATTTCGAAGAAAATCCATTTATATAGAGCTAAATTTTTGTTAAATTTGGTATATATATACAGTTGAATATGAATCAAATTCATATTTTAAATTTAATATTCAAACCATTTCGAATATTCAATTCCCCTTGAGTAAATTTACCTCAATGCCCTAAATGAGCTACCGGTGGGACCTTATGGACCTACAGTTTAGAAGCTCCAACGATATGAGATTAATTGACTAAACTCATTAATCAATTAACCAATATTTGTTAACTGTGGTTCACTCCACTATAGAACCACAACTGCACTCTTTTGACTGCATATATATTTCTGTGTCCATGGATATTGACCAATAACAGTAAGTTAGTCCTTCACGTGTGTTCGTAACTCCAGCTAGGTCAAATTACCGTTTTACCGCTGGGTTACCTCTACCTCCTTAAGTACCAATGCTCCTCTAATGAACAACCTATTTGAGGCCCAACCATCAAATAGAAAACCCCTCTCGGGGCCAGTGAGAGGGTAGAGCCCTTTGTTCAAGACCCGGAGACACCACTTAAGGGAACACACATCTACTTACCCTAAATTCGGGAAGGATTGAATTTCTTCTTGTGTGATTATGTTCCCAGCTCCCCACTCGGTCTTGTCCCCAAAATGGTATGCTTATTGAGTCGGCGTGCAGGCCATTCTCACCCATACAAATCAAAAGACAATCTCTTGTGAACATGAGTCCATAACCCACTCAGGATTGAGACTAAGTTGCCTAGGTCATCCTAGTGAAATAGAAACCTAACTAGTCAATAGTGTTACAGCTAGTGGTTAACTATTTCGCGGTCCGGTCTTATGCAAACTCATTGCACAGGATACCCCCACTCACATGTCCCCTACACGAATGCGTTGGATCATTGCGTTTGTATCATAATACCAAGCGGGTCGTATCCATAGTGTCACCAAGATAAGGTACCCAGCCTCATCCCTATACTATAGACCCTTTAGGTTGTAACTTGAACAACGATCCCCGTATGTCCCCACATACAAGTTCAAGTCTCATACTAACAACCTAGGATGTTCAGTTTATTGGATTAGGGTTATTAGGGCAAGATATACGCAATACAAACAATAATAAATGAACAATACATGAATTATCACTTTATTAATGTTCGGTCAAATGTTTTTTACTATCCACGAGTTTTAGGGCATAAAATCCAACAGTTACAACTCTTGAAATGACAATAGGTTACTCTAGAGTTTCATTTTGAGGCTATAAAAAGCCATGTATGTTGTATTTGCAAATAAGACTTGGAAATGTAGTAAAATAGGCCTTTGTGCTTTTCCTTTAGCCGAGAGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGCTGAGAATCATTCAAGCTTGACTTGATCAATCATGCTTGTGGAGTGATTCGAATCTCAAACAAGGTTTCTTGCTTTGAGATATTTGATCGATAAGGTAATACAGTTTTTACTTTCCTTGTGTTGATTTTCAAATCAGTTTTGGGGTTTTCAGATTTGAGATTTAAAGGTCTTGTTTTTTAGCAAGGTTGTTAGATACATTTCCTGGAAGTTTCATAACACTGCCTGTATTTTCGCAGCCAACGGTGCGTGAGTTGTTGTGTCAATCATTTCCAATGCACACTATATGTTTTCGTCAGGTCTGTTCACCACTGCTCCAATTCTTGTGCCTTCATCACCCATGCTCATCGATGCATCCGTATACAAATTAAACTCTGTCACATGA ATGGCGCTGCTTTTGCATTGGCGGTCAATTCCATCTGGAATGTGGAAAATCAATTGTGATGCCGCCTGGAACGAAGGTCAGGACCGAGGTGGTATTGGCTGGATTCTCCGACGGTGGGACGGTTCTCCGGTGTCAGCGGGTCTCAGGAGCATCAACTGCCAAAGGAACATCAAGTGGCTGGAAGCCCTTGCAGCGGTCGACGGTCTCAATTCGGTGTCAATCAACTCTCCTAGAGTGATTCTTGAGATGGATTCCCTTCAAGTCGTGAACCTGCTCACGGGAAGAGATGAGGATATCACTAAGATTGTCTATCTGGTGCGGGAAGCCAAGAGTCGTATAGCTTCCCTCCAGATGGATTCGGTTGTTCACACTCCAAGAAGATACAATAATATGGCCCACATTTTGGCTAGAAGGGCTTGTGATCTTAATATATCTATGAGTTGGTGTAATTTTTTCCCTTCTTGGTTGATTTCTTTAAACAATATTGACATTGGTGTGGAAAATCACATAAGTGGGGGTGCCTGTCCCATTATGGATAACCCTATGAGGGGTCTGTTCACCACTGCTCCAATTCTTGTGCCTTCATCACCCATGCTCATCGATGCATCCGTATACAAATTAAACTCTGTCACATGA ATGGCGCTGCTTTTGCATTGGCGGTCAATTCCATCTGGAATGTGGAAAATCAATTGTGATGCCGCCTGGAACGAAGGTCAGGACCGAGGTGGTATTGGCTGGATTCTCCGACGGTGGGACGGTTCTCCGGTGTCAGCGGGTCTCAGGAGCATCAACTGCCAAAGGAACATCAAGTGGCTGGAAGCCCTTGCAGCGGTCGACGGTCTCAATTCGGTGTCAATCAACTCTCCTAGAGTGATTCTTGAGATGGATTCCCTTCAAGTCGTGAACCTGCTCACGGGAAGAGATGAGGATATCACTAAGATTGTCTATCTGGTGCGGGAAGCCAAGAGTCGTATAGCTTCCCTCCAGATGGATTCGGTTGTTCACACTCCAAGAAGATACAATAATATGGCCCACATTTTGGCTAGAAGGGCTTGTGATCTTAATATATCTATGAGTTGGTGTAATTTTTTCCCTTCTTGGTTGATTTCTTTAAACAATATTGACATTGGTGTGGAAAATCACATAAGTGGGGGTGCCTGTCCCATTATGGATAACCCTATGAGGGGTCTGTTCACCACTGCTCCAATTCTTGTGCCTTCATCACCCATGCTCATCGATGCATCCGTATACAAATTAAACTCTGTCACATGA MALLLHWRSIPSGMWKINCDAAWNEGQDRGGIGWILRRWDGSPVSAGLRSINCQRNIKWLEALAAVDGLNSVSINSPRVILEMDSLQVVNLLTGRDEDITKIVYLVREAKSRIASLQMDSVVHTPRRYNNMAHILARRACDLNISMSWCNFFPSWLISLNNIDIGVENHISGGACPIMDNPMRGLFTTAPILVPSSPMLIDASVYKLNSVT Homology
BLAST of Spg038656 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia]) HSP 1 Score: 115.2 bits (287), Expect = 7.1e-22 Identity = 62/154 (40.26%), Postives = 89/154 (57.79%), Query Frame = 0
BLAST of Spg038656 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia]) HSP 1 Score: 101.7 bits (252), Expect = 8.1e-18 Identity = 53/136 (38.97%), Postives = 80/136 (58.82%), Query Frame = 0
BLAST of Spg038656 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia]) HSP 1 Score: 99.8 bits (247), Expect = 3.1e-17 Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 0
BLAST of Spg038656 vs. NCBI nr
Match: KAF4360260.1 (hypothetical protein F8388_020551 [Cannabis sativa] >KAF4393916.1 hypothetical protein G4B88_025885 [Cannabis sativa]) HSP 1 Score: 89.0 bits (219), Expect = 5.4e-14 Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 0
BLAST of Spg038656 vs. NCBI nr
Match: XP_022148737.1 (uncharacterized protein LOC111017329 [Momordica charantia]) HSP 1 Score: 87.4 bits (215), Expect = 1.6e-13 Identity = 46/132 (34.85%), Postives = 79/132 (59.85%), Query Frame = 0
BLAST of Spg038656 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 3.4e-22 Identity = 62/154 (40.26%), Postives = 89/154 (57.79%), Query Frame = 0
BLAST of Spg038656 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 3.9e-18 Identity = 53/136 (38.97%), Postives = 80/136 (58.82%), Query Frame = 0
BLAST of Spg038656 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17 Identity = 54/144 (37.50%), Postives = 80/144 (55.56%), Query Frame = 0
BLAST of Spg038656 vs. ExPASy TrEMBL
Match: A0A7J6ERF5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020551 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 2.6e-14 Identity = 49/160 (30.63%), Postives = 82/160 (51.25%), Query Frame = 0
BLAST of Spg038656 vs. ExPASy TrEMBL
Match: A0A803PLN3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 5.8e-14 Identity = 50/162 (30.86%), Postives = 85/162 (52.47%), Query Frame = 0
BLAST of Spg038656 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 58.2 bits (139), Expect = 9.5e-09 Identity = 46/153 (30.07%), Postives = 69/153 (45.10%), Query Frame = 0
BLAST of Spg038656 vs. TAIR 10
Match: AT1G52990.1 (thioredoxin family protein ) HSP 1 Score: 54.7 bits (130), Expect = 1.1e-07 Identity = 40/149 (26.85%), Postives = 65/149 (43.62%), Query Frame = 0
BLAST of Spg038656 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 54.3 bits (129), Expect = 1.4e-07 Identity = 41/155 (26.45%), Postives = 69/155 (44.52%), Query Frame = 0
BLAST of Spg038656 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 44.3 bits (103), Expect = 1.4e-04 Identity = 36/156 (23.08%), Postives = 64/156 (41.03%), Query Frame = 0
BLAST of Spg038656 vs. TAIR 10
Match: AT3G23320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 43.5 bits (101), Expect = 2.4e-04 Identity = 37/155 (23.87%), Postives = 65/155 (41.94%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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