Spg038581 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg038581
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative
Location	scaffold12: 6846632 .. 6848769 (-)
RNA-Seq Expression	Spg038581
Synteny	Spg038581

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAAGGATTGGCGGCCACAGAGAGAGGACCAAGATCGGTAACTTATGGCGTTTCAATCGCTTCATTGATAACCGGTGTTTCGCTCCGCCTACGCTCGACGCCGATGCTGACGTTGACGCTCTCAGGCGGCGCCCTTATCGGTTGCTTCCGAGGCCGGACCTCATCGATATCTTCGTCCTCAAGCTCGACGGCTCTGTATTTGGTGATTCCTTCGCCATTTCTGACTTTTTCTTTTTCTTTCTTCTTGCTTTTTCTTCGTTTCTTGTAAGACATTTACTCCGTCTTTGATGAAGTTCGCTTTTGCTTCGAAAATTGCTATCGGTTTGCTTTTTCGGTGGTCGAGATGAGAGATGGAAGGAAACGGAAACGGAAACGGAAAGTGCTTGAAGATAAATTGCTTGAGAGACTCTAATGGAGTACTTTGCTGAGAACACTGTAGCGGAAAGCGTTTTAAAAGAGTGGCTAATTAAGACGGCTATGGCTAAGAAAAATGTGATATCAAGATAATTAACTCTCGCGATTCCTTTGTATTTTGCCTCTTTTTTCCCCTGCTTTTATAGCGGTGCAAAAATTTGAGGCTACTCGTTCTTTATATTGCGGGAATTGCAGTAGTCACCATAAATTGAATCGATTCTATATGGTTTGGCTATCCAGGTGTTCGTGTACCGCGCAATGGTACGGTTGCAGATCTCAAACGAACGATAGAGGAAGTTTTTGATTCGCCCGAGGGGAGTGAGCATTGCAAGATTACATGGTAGTATCGACCTTGTTATGAGATTTAAGACTAGTTTTACCACCAATGATTTTGTTTTTGGGAGCTTTGTAATTTTATTTGAGTTTTACATGAATGTTGTTTATATGCTCTTAGGTCACTTGTCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGGCATGCATTAGAGTTCTTGGCATTAAAGATGGTGATCAGGTGTGACAATGTTGTGATGTTGTGATGTGTTTCTTGCTTGTTCATTGAGTTAAATGCTGGCTGCTCTCTAGATTTTAATGTCTTTGTCCTGTTATATAATGCAGCTTCAGTTTATTAGGCATATGACAATCAACTGTCTACCAATGAAGAGAGATAGGAAGAACCAAACTGTTTCTTGCAAAACAGTATTGTTGTAAGTTATACTTTCTTATGGCTGCAGTAGCACATGCGTCTGTTTCTTGCAAAACGCTGTCGTTTTAAGTTGTTATTTCTAATGACTGCACTAGCACATGCACAAGTATGCCAATCCACGGGCAGATGCCATTCTAATTTATGAATACTATTGCTCAATTTGATGGTTTGTTTGAAGTCCCATTGAACAGGTGGTAGTCTAGAAAATGTGCAAAATGTACAGTTTGGTGGGCTCCCCTGGGTTTGGGGAGGGGAGTCAACAATTTGTTTAGAATCGTACCCAAAATCAATTTTCCATTGTTTCTATTTTACATTTTTAGTAATTCAGTTATCATTTCTGTTGCATTCCTCATTTCTACAAATAAATAGCATCTATATTCATAATTAGACTCGCCTTTATTGTCTAAGACTTACCGTTCTTGATATAATATTTATAGTAACAGAAAAATGTAGCGTAGTTCAATAGTAAGACAAATTTGTTGGGTCTTTGTTTTATTATCTACTTTAGGAATGTTTTCAAAATCCAAACCAAGTTTTGAAAACTTAAAAAATAGTTTTTAAAAACTTGTTTTTTTTTTTAGAATTTAACTCTGAATTCAAATCTTTCTTTAAGAAAGATGAAAACCATCGTAAAGAAACGGTAACAAAACAAGCTCAATTTTTTTTAAAAAAAAACAAAAACTAAAGGCCTCGATGTTTGCTTCTTACTGTTCTATTTGATATTACACTTATACATCCCATAAAAGTCTGTCAGCAGAATCAAAATCTGTCGAAGAAAATCAACTGGCTGAGCAAGATGATCCCAAGAATTATGAAGTTCACGGGGAAGGCTCGAATCAGGAGGAGGAGATTCCTATGGCTGGATTTCAGCTAGCAAATTTCTTCAGAGGACGGCTATTGTATTCCAGGATTTGGGGGTTTTTCAAGAGTGCATCAGAATGCAGGAATAGGCCTTCTGGATTCTGCATTACCTGA

mRNA sequence

ATGCGAAGGATTGGCGGCCACAGAGAGAGGACCAAGATCGGTAACTTATGGCGTTTCAATCGCTTCATTGATAACCGGTGTTTCGCTCCGCCTACGCTCGACGCCGATGCTGACGTTGACGCTCTCAGGCGGCGCCCTTATCGGTTGCTTCCGAGGCCGGACCTCATCGATATCTTCGTCCTCAAGCTCGACGGCTCTGTATTTGGTGTTCGTGTACCGCGCAATGGTACGGTTGCAGATCTCAAACGAACGATAGAGGAAGTTTTTGATTCGCCCGAGGGGAGTGAGCATTGCAAGATTACATGGTCACTTGTCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGGCATGCATTAGAGTTCTTGGCATTAAAGATGGTGATCAGCTTCAGTTTATTAGGCATATGACAATCAACTGTCTACCAATGAAGAGAGATAGGAAGAACCAAACTGTTTCTTGCAAAACAGTATTGTTTCTGTCAGCAGAATCAAAATCTGTCGAAGAAAATCAACTGGCTGAGCAAGATGATCCCAAGAATTATGAAGTTCACGGGGAAGGCTCGAATCAGGAGGAGGAGATTCCTATGGCTGGATTTCAGCTAGCAAATTTCTTCAGAGGACGGCTATTGTATTCCAGGATTTGGGGGTTTTTCAAGAGTGCATCAGAATGCAGGAATAGGCCTTCTGGATTCTGCATTACCTGA

Coding sequence (CDS)

ATGCGAAGGATTGGCGGCCACAGAGAGAGGACCAAGATCGGTAACTTATGGCGTTTCAATCGCTTCATTGATAACCGGTGTTTCGCTCCGCCTACGCTCGACGCCGATGCTGACGTTGACGCTCTCAGGCGGCGCCCTTATCGGTTGCTTCCGAGGCCGGACCTCATCGATATCTTCGTCCTCAAGCTCGACGGCTCTGTATTTGGTGTTCGTGTACCGCGCAATGGTACGGTTGCAGATCTCAAACGAACGATAGAGGAAGTTTTTGATTCGCCCGAGGGGAGTGAGCATTGCAAGATTACATGGTCACTTGTCTGGGGACATTTCTGCTTATGTTATGAAGGCGAAAAGCTTATTGATGACAAGGCATGCATTAGAGTTCTTGGCATTAAAGATGGTGATCAGCTTCAGTTTATTAGGCATATGACAATCAACTGTCTACCAATGAAGAGAGATAGGAAGAACCAAACTGTTTCTTGCAAAACAGTATTGTTTCTGTCAGCAGAATCAAAATCTGTCGAAGAAAATCAACTGGCTGAGCAAGATGATCCCAAGAATTATGAAGTTCACGGGGAAGGCTCGAATCAGGAGGAGGAGATTCCTATGGCTGGATTTCAGCTAGCAAATTTCTTCAGAGGACGGCTATTGTATTCCAGGATTTGGGGGTTTTTCAAGAGTGCATCAGAATGCAGGAATAGGCCTTCTGGATTCTGCATTACCTGA

Protein sequence

MRRIGGHRERTKIGNLWRFNRFIDNRCFAPPTLDADADVDALRRRPYRLLPRPDLIDIFVLKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPEGSEHCKITWSLVWGHFCLCYEGEKLIDDKACIRVLGIKDGDQLQFIRHMTINCLPMKRDRKNQTVSCKTVLFLSAESKSVEENQLAEQDDPKNYEVHGEGSNQEEEIPMAGFQLANFFRGRLLYSRIWGFFKSASECRNRPSGFCIT

Homology

[Close]

BLAST of Spg038581 vs. NCBI nr
Match: XP_022998358.1 (uncharacterized protein LOC111493024 [Cucurbita maxima])

HSP 1 Score: 424.5 bits (1090), Expect = 6.2e-115
Identity = 207/241 (85.89%), Postives = 218/241 (90.46%), Query Frame = 0


Query: 1   MRRIGGHRERTKIGNLWRFNRFIDNRCFAPPTLDADADVDALRRRPYRLLPRPDLIDIFV 60
           MRRIGG RER+KIGNLWRFNRFIDNRC AP TLD D DVDALRRRPYRLLPR +LID+FV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPEGSEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRV RNGTVADLK+ IEEVFDSP  SEHCKITWSLVWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPRASEHCKITWSLVWGHFCLCYEGEKLID 120

Query: 121 DKACIRVLGIKDGDQLQFIRHMTINCLPMKRDRKNQTVSCKTVLFLSAESKSVEENQLAE 180
           DKA IRV+GIKDGDQLQFIRHM+INCLPMKRDRKNQ V CKTVLFL AESKS+E NQ+A 
Sbjct: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLFLPAESKSIEGNQVAG 180

Query: 181 QDDPKNYEVHGEGSNQEEEIPMAGFQLANFFRGRLLYSRIWGFFKSASECRNRP-SGFCI 240
           Q DP NYEVH +GSNQ EEIPMAGFQLAN FRGRLLYS+IWGFF+SASE RNRP SGFCI
Sbjct: 181 QGDPVNYEVHEDGSNQ-EEIPMAGFQLANIFRGRLLYSKIWGFFRSASEGRNRPSSGFCI 240

[Close]

BLAST of Spg038581 vs. NCBI nr
Match: XP_022948349.1 (uncharacterized protein LOC111452053 [Cucurbita moschata] >KAG7036517.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 422.5 bits (1085), Expect = 2.4e-114
Identity = 206/241 (85.48%), Postives = 218/241 (90.46%), Query Frame = 0


Query: 1   MRRIGGHRERTKIGNLWRFNRFIDNRCFAPPTLDADADVDALRRRPYRLLPRPDLIDIFV 60
           MRRIGG RER+KIGNLWRFNRFIDNRC AP TLD D DVDALRRRPYRLLPR +LID+FV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPEGSEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRV RNGTVADLK+ IEEVFDSP  SEHCKITWSLVWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120

Query: 121 DKACIRVLGIKDGDQLQFIRHMTINCLPMKRDRKNQTVSCKTVLFLSAESKSVEENQLAE 180
           DKA IRV+GIKDGDQLQFIRHM+INCLPMKRDRKNQ V CKTVLFL AESKS+E NQ+A 
Sbjct: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLFLPAESKSIEGNQVAG 180

Query: 181 QDDPKNYEVHGEGSNQEEEIPMAGFQLANFFRGRLLYSRIWGFFKSASECRNRP-SGFCI 240
           Q DP NYEVH +GSNQ EEIPMAGFQLAN FRGR+LYS+IWGFF+SASE RNRP SGFCI
Sbjct: 181 QGDPVNYEVHEDGSNQ-EEIPMAGFQLANIFRGRVLYSKIWGFFRSASEGRNRPSSGFCI 240

[Close]

BLAST of Spg038581 vs. NCBI nr
Match: XP_023525469.1 (uncharacterized protein LOC111789062 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 421.4 bits (1082), Expect = 5.2e-114
Identity = 205/241 (85.06%), Postives = 217/241 (90.04%), Query Frame = 0


Query: 1   MRRIGGHRERTKIGNLWRFNRFIDNRCFAPPTLDADADVDALRRRPYRLLPRPDLIDIFV 60
           MRRIGG RER+KIGNLWRFNRFIDNRC AP TLD D DVDALRRRPYRLLPR +LID+FV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPEGSEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRV RNGTVADLK+ IEEVFDSP  SEHCKITWSLVWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120

Query: 121 DKACIRVLGIKDGDQLQFIRHMTINCLPMKRDRKNQTVSCKTVLFLSAESKSVEENQLAE 180
           DKA IRV+GIKDGDQLQF+RHM+INCLPMKRDRKNQ V CKTVLFL AE KS+E NQ+A 
Sbjct: 121 DKAYIRVVGIKDGDQLQFVRHMSINCLPMKRDRKNQAVPCKTVLFLPAEPKSIEGNQVAG 180

Query: 181 QDDPKNYEVHGEGSNQEEEIPMAGFQLANFFRGRLLYSRIWGFFKSASECRNRPS-GFCI 240
           Q DP NYEVH +GSNQ EEIPMAGFQLAN FRGRLLYS+IWGFF+SASE RNRPS GFCI
Sbjct: 181 QGDPVNYEVHEDGSNQ-EEIPMAGFQLANIFRGRLLYSKIWGFFRSASEGRNRPSAGFCI 240

[Close]

BLAST of Spg038581 vs. NCBI nr
Match: XP_022153470.1 (uncharacterized protein LOC111020973 isoform X1 [Momordica charantia] >XP_022153471.1 uncharacterized protein LOC111020973 isoform X1 [Momordica charantia])

HSP 1 Score: 401.0 bits (1029), Expect = 7.3e-108
Identity = 196/241 (81.33%), Postives = 210/241 (87.14%), Query Frame = 0


Query: 1   MRRIGGHRERTKIGNLWRFNRFIDNRCFAPPTLDADADVDALRRRPYRLLPRPDLIDIFV 60
           M RIGG RER+KIGNLWRFNRFID RC APPTLD D DVDAL R PYRLLPR DLID+FV
Sbjct: 1   MPRIGG-RERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFV 60

Query: 61  LKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPEGSEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRV RNGTVA+LKR IEEVF SP G EHCKITWSLVWGHFCLCYEG+ LID
Sbjct: 61  LKLDGSVFGVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLID 120

Query: 121 DKACIRVLGIKDGDQLQFIRHMTINCLPMKRDRKNQTVSCKTVLFLSAESKSVEENQLAE 180
           DKACIRV GIKDGDQLQFIRHM+I+CLP+KRDRK+QTVSC+TVLFL  ESK VE+NQLA 
Sbjct: 121 DKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAG 180

Query: 181 QDDPKNY-EVHGEGSNQEEEIPMAGFQLANFFRGRLLYSRIWGFFKSASECRNRPSGFCI 240
            DDP+ Y EVH +GSNQ EE+P+ GF LANFFRGR LYSRIWGF KSASE RNRPSGF I
Sbjct: 181 PDDPETYEEVHEDGSNQ-EEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPSGFGI 239

[Close]

BLAST of Spg038581 vs. NCBI nr
Match: XP_038904269.1 (uncharacterized protein LOC120090621 isoform X1 [Benincasa hispida])

HSP 1 Score: 392.1 bits (1006), Expect = 3.4e-105
Identity = 195/244 (79.92%), Postives = 209/244 (85.66%), Query Frame = 0


Query: 1   MRRIGGHRERTKIGNLWRFNRFIDNRCFA-PPTLDADADVDALRRRPYRLLPRPDLIDIF 60
           M  I  H ERTKIGNLWRF+RF+D RC A PPTLD DAD  AL RRPYRLLPR DLID+F
Sbjct: 1   MPTISTHSERTKIGNLWRFSRFVDYRCLAPPPTLDIDADFRALSRRPYRLLPRQDLIDLF 60

Query: 61  VLKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPEGSEHCKITWSLVWGHFCLCYEGEKLI 120
           VLKLDGSVFG+RV RN TVADLKR IEEVFDSP GSEHCKITWSL+WGHFCLCYEGEKLI
Sbjct: 61  VLKLDGSVFGIRVSRNATVADLKRAIEEVFDSPGGSEHCKITWSLIWGHFCLCYEGEKLI 120

Query: 121 DDKACIRVLGIKDGDQLQFIRHMTINCLPMKRDRKNQTVSCKTVLFLSAESKSVEENQLA 180
           DDK CIRV GIKDGDQLQF+RHM+INCLP+KRD KNQ+VSCKT+L LS ESKSVEENQ A
Sbjct: 121 DDKTCIRVFGIKDGDQLQFLRHMSINCLPVKRDGKNQSVSCKTMLSLSPESKSVEENQPA 180

Query: 181 EQDDPKNYEVHGEGSNQEEEIPM--AGFQLANFFRGRLLYSRIWGFFKSASECRNRP-SG 240
            QDD +NY+VH  GSNQEE + M  AGFQLANFFRGR+LYSRIWGF KSASE RNRP SG
Sbjct: 181 GQDDLENYQVHRGGSNQEEVVSMGRAGFQLANFFRGRVLYSRIWGFRKSASEGRNRPSSG 240

[Close]

BLAST of Spg038581 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.7e-11
Identity = 41/125 (32.80%), Postives = 65/125 (52.00%), Query Frame = 0


Query: 50  LPRPDLIDIFVLKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPEGSE--HCKITWSLVWG 109
           L +   + + V+KLDGS   V V  + T+ DLK  I++  +  E +   H  I+W  VW 
Sbjct: 46  LEKGSAMRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWS 105

Query: 110 HFCLCYEGEKLIDDKACIRVLGIKDGDQLQFIRHMTINCLPMKRDRKNQTVSCKTVLFLS 169
           +FCL    EKL+DD A ++ +GI++  Q+ F+ ++      MK+ R   +   K  LF S
Sbjct: 106 NFCLSCNNEKLLDDNAVLQDVGIRNNSQVTFMPYV------MKKGRGRHSKRKKHRLFRS 164

Query: 170 AESKS 173
               S
Sbjct: 166 LHKTS 164

[Close]

BLAST of Spg038581 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.2e-09
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 60  VLKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPE----GSEHCKITWSLVWGHFCLCYEG 119
           V K+DG V  V V +N TV DLK+ I+      +    G +H  I+WS VW  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLIDDKACIRVLGIKDGDQLQFIRHM 143
           EKL +D+  +R  GI++ D++ FI+ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of Spg038581 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 8.1e-09
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 60  VLKLDGSVFGVRVPRNGTVADLKRTIEEVF----DSPEGSEHCKITWSLVWGHFCLCYEG 119
           V K+DG V  V V +N TV DLK+ I+       +   G +H  I+WS VW  + L   G
Sbjct: 36  VCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQH--ISWSYVWRTYHLTSAG 95

Query: 120 EKLIDDKACIRVLGIKDGDQLQFIRHM 143
           EKL +D+  +R  GI++ D++ FI+ +
Sbjct: 96  EKLTEDRKKLRDYGIRNRDEVSFIKKL 120

[Close]

BLAST of Spg038581 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-08
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 60  VLKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPE----GSEHCKITWSLVWGHFCLCYEG 119
           V K+DG V  V V ++ TV DLK+ I+      +    G +H  I+WS VW  + L   G
Sbjct: 45  VCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQH--ISWSYVWRTYHLTSAG 104

Query: 120 EKLIDDKACIRVLGIKDGDQLQFIRHM 143
           EKL +D+  +R  GI++ D++ FI+ +
Sbjct: 105 EKLTEDRKKLRDYGIRNRDEVSFIKKL 129

[Close]

BLAST of Spg038581 vs. ExPASy TrEMBL
Match: A0A6J1KGI2 (uncharacterized protein LOC111493024 OS=Cucurbita maxima OX=3661 GN=LOC111493024 PE=4 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 3.0e-115
Identity = 207/241 (85.89%), Postives = 218/241 (90.46%), Query Frame = 0


Query: 1   MRRIGGHRERTKIGNLWRFNRFIDNRCFAPPTLDADADVDALRRRPYRLLPRPDLIDIFV 60
           MRRIGG RER+KIGNLWRFNRFIDNRC AP TLD D DVDALRRRPYRLLPR +LID+FV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPEGSEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRV RNGTVADLK+ IEEVFDSP  SEHCKITWSLVWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPRASEHCKITWSLVWGHFCLCYEGEKLID 120

Query: 121 DKACIRVLGIKDGDQLQFIRHMTINCLPMKRDRKNQTVSCKTVLFLSAESKSVEENQLAE 180
           DKA IRV+GIKDGDQLQFIRHM+INCLPMKRDRKNQ V CKTVLFL AESKS+E NQ+A 
Sbjct: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLFLPAESKSIEGNQVAG 180

Query: 181 QDDPKNYEVHGEGSNQEEEIPMAGFQLANFFRGRLLYSRIWGFFKSASECRNRP-SGFCI 240
           Q DP NYEVH +GSNQ EEIPMAGFQLAN FRGRLLYS+IWGFF+SASE RNRP SGFCI
Sbjct: 181 QGDPVNYEVHEDGSNQ-EEIPMAGFQLANIFRGRLLYSKIWGFFRSASEGRNRPSSGFCI 240

[Close]

BLAST of Spg038581 vs. ExPASy TrEMBL
Match: A0A6J1G9M5 (uncharacterized protein LOC111452053 OS=Cucurbita moschata OX=3662 GN=LOC111452053 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.1e-114
Identity = 206/241 (85.48%), Postives = 218/241 (90.46%), Query Frame = 0


Query: 1   MRRIGGHRERTKIGNLWRFNRFIDNRCFAPPTLDADADVDALRRRPYRLLPRPDLIDIFV 60
           MRRIGG RER+KIGNLWRFNRFIDNRC AP TLD D DVDALRRRPYRLLPR +LID+FV
Sbjct: 1   MRRIGGPRERSKIGNLWRFNRFIDNRCLAPLTLDGDGDVDALRRRPYRLLPRLELIDLFV 60

Query: 61  LKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPEGSEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRV RNGTVADLK+ IEEVFDSP  SEHCKITWSLVWGHFCLCYEGEKLID
Sbjct: 61  LKLDGSVFGVRVARNGTVADLKQAIEEVFDSPGASEHCKITWSLVWGHFCLCYEGEKLID 120

Query: 121 DKACIRVLGIKDGDQLQFIRHMTINCLPMKRDRKNQTVSCKTVLFLSAESKSVEENQLAE 180
           DKA IRV+GIKDGDQLQFIRHM+INCLPMKRDRKNQ V CKTVLFL AESKS+E NQ+A 
Sbjct: 121 DKAYIRVVGIKDGDQLQFIRHMSINCLPMKRDRKNQAVPCKTVLFLPAESKSIEGNQVAG 180

Query: 181 QDDPKNYEVHGEGSNQEEEIPMAGFQLANFFRGRLLYSRIWGFFKSASECRNRP-SGFCI 240
           Q DP NYEVH +GSNQ EEIPMAGFQLAN FRGR+LYS+IWGFF+SASE RNRP SGFCI
Sbjct: 181 QGDPVNYEVHEDGSNQ-EEIPMAGFQLANIFRGRVLYSKIWGFFRSASEGRNRPSSGFCI 240

[Close]

BLAST of Spg038581 vs. ExPASy TrEMBL
Match: A0A6J1DGY1 (uncharacterized protein LOC111020973 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020973 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 3.6e-108
Identity = 196/241 (81.33%), Postives = 210/241 (87.14%), Query Frame = 0


Query: 1   MRRIGGHRERTKIGNLWRFNRFIDNRCFAPPTLDADADVDALRRRPYRLLPRPDLIDIFV 60
           M RIGG RER+KIGNLWRFNRFID RC APPTLD D DVDAL R PYRLLPR DLID+FV
Sbjct: 1   MPRIGG-RERSKIGNLWRFNRFIDTRCLAPPTLDGDGDVDALSRMPYRLLPRQDLIDLFV 60

Query: 61  LKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPEGSEHCKITWSLVWGHFCLCYEGEKLID 120
           LKLDGSVFGVRV RNGTVA+LKR IEEVF SP G EHCKITWSLVWGHFCLCYEG+ LID
Sbjct: 61  LKLDGSVFGVRVARNGTVAELKRAIEEVFVSPGGDEHCKITWSLVWGHFCLCYEGQNLID 120

Query: 121 DKACIRVLGIKDGDQLQFIRHMTINCLPMKRDRKNQTVSCKTVLFLSAESKSVEENQLAE 180
           DKACIRV GIKDGDQLQFIRHM+I+CLP+KRDRK+QTVSC+TVLFL  ESK VE+NQLA 
Sbjct: 121 DKACIRVFGIKDGDQLQFIRHMSISCLPVKRDRKSQTVSCRTVLFLPPESKCVEDNQLAG 180

Query: 181 QDDPKNY-EVHGEGSNQEEEIPMAGFQLANFFRGRLLYSRIWGFFKSASECRNRPSGFCI 240
            DDP+ Y EVH +GSNQ EE+P+ GF LANFFRGR LYSRIWGF KSASE RNRPSGF I
Sbjct: 181 PDDPETYEEVHEDGSNQ-EEVPIPGFHLANFFRGRFLYSRIWGFLKSASEGRNRPSGFGI 239

[Close]

BLAST of Spg038581 vs. ExPASy TrEMBL
Match: A0A1S3BY00 (uncharacterized protein LOC103494657 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494657 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 4.3e-98
Identity = 178/231 (77.06%), Postives = 194/231 (83.98%), Query Frame = 0


Query: 7   HRERTKIGNLWRFNRFIDNRCFAPPTLDADADVDALRRRPYRLLPRPDLIDIFVLKLDGS 66
           H +RTKI NLWRF RFID RCFAPPTLD + D DAL RRPYRLLPR DLID+FVLKLDGS
Sbjct: 7   HSDRTKIANLWRFTRFIDYRCFAPPTLDFNPDSDALSRRPYRLLPRQDLIDLFVLKLDGS 66

Query: 67  VFGVRVPRNGTVADLKRTIEEVFDSPEGSEHCKITWSLVWGHFCLCYEGEKLIDDKACIR 126
           VFGVRV RN TVADLKR IEEVFDSP GSEH KITWSL+WGHFCLCYEGEKL DDKACIR
Sbjct: 67  VFGVRVSRNSTVADLKRAIEEVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLTDDKACIR 126

Query: 127 VLGIKDGDQLQFIRHMTINCLPMKRDRKNQTVSCKTVLFLSAESKSVEENQLAEQDDPKN 186
              IKDGDQLQFIRHM+INCL MK+DRKNQTV CKT+LF S ESK+VEENQ   +DD K+
Sbjct: 127 GYSIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKTILFFSPESKAVEENQADGRDDIKD 186

Query: 187 YEVHGEGSNQEEEIPM--AGFQLANFFRGRLLYSRIWGFFKSASECRNRPS 236
           Y+VH + SNQEE   M  A FQL+NFF+GR+LYSR+WGF KSASE RNR S
Sbjct: 187 YQVHRDDSNQEEVASMARARFQLSNFFKGRVLYSRVWGFCKSASEGRNRAS 237

[Close]

BLAST of Spg038581 vs. ExPASy TrEMBL
Match: A0A0A0KTJ1 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006470 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.8e-97
Identity = 176/229 (76.86%), Postives = 193/229 (84.28%), Query Frame = 0


Query: 9   ERTKIGNLWRFNRFIDNRCFAPPTLDADADVDALRRRPYRLLPRPDLIDIFVLKLDGSVF 68
           +RTKI NLWRF RFID RCFAPPTLD D D DAL RRPYRLLPR D ID+FVLKLDGSVF
Sbjct: 9   DRTKIANLWRFTRFIDYRCFAPPTLDFDPDSDALSRRPYRLLPRQDHIDLFVLKLDGSVF 68

Query: 69  GVRVPRNGTVADLKRTIEEVFDSPEGSEHCKITWSLVWGHFCLCYEGEKLIDDKACIRVL 128
           G+RV RN TVADLKR IE+VFDSP GSEH KITWSL+WGHFCLCYEGEKLIDDK CI+  
Sbjct: 69  GIRVSRNSTVADLKRAIEKVFDSPGGSEHYKITWSLIWGHFCLCYEGEKLIDDKTCIKGY 128

Query: 129 GIKDGDQLQFIRHMTINCLPMKRDRKNQTVSCKTVLFLSAESKSVEENQLAEQDDPKNYE 188
           GIKDGDQLQFIRHM+INCL MK+DRKNQTV CK +LFLS ESK+VEENQ   QDD K+Y+
Sbjct: 129 GIKDGDQLQFIRHMSINCLSMKKDRKNQTVPCKAMLFLSPESKAVEENQADGQDDFKDYQ 188

Query: 189 VHGEGSNQEE--EIPMAGFQLANFFRGRLLYSRIWGFFKSASECRNRPS 236
           VH + SN+EE   +  AGFQLAN F+GR+LYSRIWGF KSASE RNR S
Sbjct: 189 VHRDDSNREEVASVARAGFQLANLFKGRVLYSRIWGFCKSASEGRNRAS 237

[Close]

BLAST of Spg038581 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-35
Identity = 80/198 (40.40%), Postives = 119/198 (60.10%), Query Frame = 0


Query: 43  RRRPYRLLPRPDLIDIFVLKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPEGSEHCKITW 102
           RR  Y  LP    I + V+KL+GS+F V V ++ +VA+LKR +E+VF       H  I+W
Sbjct: 40  RRSSYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELKRAVEQVFTISPLEGHGMISW 99

Query: 103 SLVWGHFCLCYEGEKLIDDKACIRVLGIKDGDQLQFIRHMTINCLPMKRDRKNQTVSCKT 162
           S VWGHFCLCY  ++L++DK  IR LG+ DGDQL F+RH++I+  PM  ++++++ SCK 
Sbjct: 100 SHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFVRHLSIDHSPM--NKRSKSPSCKR 159

Query: 163 VLFLSAESKSVEENQLAEQDDPKNYEVHGE-GSNQEEEIPMAGFQLANFFRGRLLYSRIW 222
            L L   S  V E Q+  Q+     +V  +     ++E+P A  +L N  +G L Y+  W
Sbjct: 160 YLELDV-SSIVNEIQIQNQNQNGVDDVAEKCYPGAQDELPAAESRLVNLIKGWLPYAGRW 219

Query: 223 GFFKSASECRNRPSGFCI 240
           G  +   ECR+ PS F +
Sbjct: 220 GVSRKGPECRSGPSRFSL 234

[Close]

BLAST of Spg038581 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 99.4 bits (246), Expect = 4.3e-21
Identity = 56/150 (37.33%), Postives = 86/150 (57.33%), Query Frame = 0


Query: 39  VDALRRR---PYRLLPRPDLIDIFVLKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPEGS 98
           +D L RR    Y  +P  + I + VLKLDGS FG++V +  TV +LK  +E  F     S
Sbjct: 19  IDGLPRRRSFNYNQMPE-EPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPIS 78

Query: 99  EHCKITWSLVWGHFCLCYEGEKLIDDKACIRVLGIKDGDQLQFIRHMTINCLPMKRDRKN 158
              KI+W  VWG FCL YE ++LI++   +   GIKDGDQL+FIRH++  C+ M + +  
Sbjct: 79  GPGKISWPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRHISNYCMLMVKHKSK 138

Query: 159 --QTVSCKTVLFLSAESKSVEENQLAEQDD 184
             +  S K +   S   ++ ++N + E ++
Sbjct: 139 TPRVSSFKQLKLFSTTPETRKKNVIREVEE 167

[Close]

BLAST of Spg038581 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 4.7e-20
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 47  YRLLPRPDLIDIFVLKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPEGSEHCKITWSLVW 106
           Y  LP  + I + VLKLDGS F V V  + TV DLK  IE  F         KI+WS VW
Sbjct: 11  YDKLPN-EPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISWSHVW 70

Query: 107 GHFCLCYEGEKLIDDKACIRVLGIKDGDQLQFIRHMTINCLPMK-RDRKNQTVSCKTVLF 166
           GHFCLC+ G+KLI D  CI   G+KDGD+++F  H++ N +  K   RK++  + + VL 
Sbjct: 71  GHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVSGNAVLSKGYSRKSKQKNLERVL- 130

Query: 167 LSAESKSVEE--NQLAEQDD 184
                K  +E  N++ E DD
Sbjct: 131 ----PKDGDEVLNRIEEIDD 144

[Close]

BLAST of Spg038581 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-17
Identity = 49/130 (37.69%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 56  IDIFVLKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPEGSEHCKITWSLVWGHFCLCYEG 115
           I + VLKLDGS F   V +  TV +LK  +E  F     S   KI+W  VWG FCL YE 
Sbjct: 6   IKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPGKISWPHVWGQFCLSYED 65

Query: 116 EKLIDDKACIRVLGIKDGDQLQFIRHMTINCLPMKRDRKN--QTVSCKTVLFLSAESKSV 175
           ++LI++   +   GIKDGDQL+FIRH++  C+ M + +    +  S K +   S   ++ 
Sbjct: 66  KRLINESEYLTEFGIKDGDQLRFIRHISNYCMLMVKHKSKTPRVSSFKQLKLFSTTPETR 125

Query: 176 EENQLAEQDD 184
           ++N + E ++
Sbjct: 126 KKNVIREVEE 132

[Close]

BLAST of Spg038581 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 6.2e-12
Identity = 41/125 (32.80%), Postives = 65/125 (52.00%), Query Frame = 0


Query: 50  LPRPDLIDIFVLKLDGSVFGVRVPRNGTVADLKRTIEEVFDSPEGSE--HCKITWSLVWG 109
           L +   + + V+KLDGS   V V  + T+ DLK  I++  +  E +   H  I+W  VW 
Sbjct: 46  LEKGSAMRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWS 105

Query: 110 HFCLCYEGEKLIDDKACIRVLGIKDGDQLQFIRHMTINCLPMKRDRKNQTVSCKTVLFLS 169
           +FCL    EKL+DD A ++ +GI++  Q+ F+ ++      MK+ R   +   K  LF S
Sbjct: 106 NFCLSCNNEKLLDDNAVLQDVGIRNNSQVTFMPYV------MKKGRGRHSKRKKHRLFRS 164

Query: 170 AESKS 173
               S
Sbjct: 166 LHKTS 164

The following BLAST results are available for this feature:

BLAST of Spg038581 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022998358.1	6.2e-115	85.89	uncharacterized protein LOC111493024 [Cucurbita maxima]	[more]
XP_022948349.1	2.4e-114	85.48	uncharacterized protein LOC111452053 [Cucurbita moschata] >KAG7036517.1 U11/U12 ...	[more]
XP_023525469.1	5.2e-114	85.06	uncharacterized protein LOC111789062 [Cucurbita pepo subsp. pepo]	[more]
XP_022153470.1	7.3e-108	81.33	uncharacterized protein LOC111020973 isoform X1 [Momordica charantia] >XP_022153...	[more]
XP_038904269.1	3.4e-105	79.92	uncharacterized protein LOC120090621 isoform X1 [Benincasa hispida]	[more]

BLAST of Spg038581 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	8.7e-11	32.80	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q8VIK1	6.2e-09	37.93	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
Q3ZBQ4	8.1e-09	37.93	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]
Q9BV90	2.4e-08	36.78	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]

BLAST of Spg038581 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KGI2	3.0e-115	85.89	uncharacterized protein LOC111493024 OS=Cucurbita maxima OX=3661 GN=LOC111493024...	[more]
A0A6J1G9M5	1.1e-114	85.48	uncharacterized protein LOC111452053 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]
A0A6J1DGY1	3.6e-108	81.33	uncharacterized protein LOC111020973 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A1S3BY00	4.3e-98	77.06	uncharacterized protein LOC103494657 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KTJ1	2.8e-97	76.86	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G006470...	[more]

BLAST of Spg038581 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80060.1	1.0e-35	40.40	Ubiquitin-like superfamily protein	[more]
AT4G32270.1	4.3e-21	37.33	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	4.7e-20	42.86	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	1.7e-17	37.69	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	6.2e-12	32.80	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 57..142 e-value: 1.8E-23 score: 82.4
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 56..141 e-value: 2.26172E-33 score: 114.152
None	No IPR available	GENE3D	3.10.20.90		coord: 53..151 e-value: 2.7E-31 score: 109.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..196
None	No IPR available	PANTHER	PTHR14942:SF9	OS02G0188500 PROTEIN	coord: 21..237
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 21..237
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 53..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg038581.1	Spg038581.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016020	membrane
cellular_component	GO:0005689	U12-type spliceosomal complex