Spg038564 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg038564
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L36
Location	scaffold12: 582569 .. 583673 (-)
RNA-Seq Expression	Spg038564
Synteny	Spg038564

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGCCTGAACAAGGGCCATATAGTCACCAAGAAGGAGCTGGCCCCTCGGCCCTCTGATCGCAAAGGAGTAAGTCAATCGACATATAGCTAGATATTTTAGAATTCTTTTCAATGATGGGAGGGAAGGCATTGGGTTTTCTCTGTTTTAATGTGTTCTTTCTTGGGTATGGTAGCTTTTTAGGAGCTTGAGGAATGAGCTAATTTTATTTCATTTGATTGGACCAATTCTGAGCTATAGTTGCATGCTTTTACTTTTAACATCATTCTTAAAAGGTCTTGTTATATCTAGTTATCGATTACATCATCTTTTTGCAACATGTGAGATTGTTTTCTCAAATTTCTGTTTTCATACAAATTAATGTAGAAAACGAGTAAAAGGGTTCTCTTTGTCCGGAGCTTGATCCGCGAAGTTGCTGGTTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAGGTTGGAAAAGACAAGCGTGCTCTGAAGGTAGCCAAGAGAAAGCTTGGAACTCACAAGAGAGCTAAGAAGAAGCGTGAGGAGATGTCCAACGTTCTAAGAAAGATGAGGTAATCTTTTAATATATCTTTTAAGGCAATCTGTTTTTTTTTACTTAGGGGCTGAATCATGTTCGGTTTGTGTGAAAGTCAGAAGGTTCACATTTGGATATGTGCGAGTGGGAAGGTCACGAGGAAGTAGTATGATTAGCGTTCTGATTTCATTTTTTGATCTATTCTTTTTGCAGGGCTGGTGGAGGTGGTGAGAAGAAGAAGTGAGATCGACACTTCTACTCATTCATTCATAGTCTTACTCTCTGGCTGCCCTTTTTTTGTTCCTGTACTGTTGAATTCGGTAGAAACTGAGCTCCTTGCGGTAGTCAATTCCAGTTTTGTTATCTACTTGTTTTACTAACATCCAATTTTGTTATGGCTCGGATCGTTTCAAGGATGCATTATTATTTCGTGAATTAAATGGCCTGTCATGTCGTTTTCAGTTTATGATTGTACTTTTAGATATTTCCACAGGAAGTGCAAACATTTTCCTTCATCCTGCCCCCATGCACGTCTTCTTCAAA

mRNA sequence

ATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGCCTGAACAAGGGCCATATAGTCACCAAGAAGGAGCTGGCCCCTCGGCCCTCTGATCGCAAAGGAAAAACGAGTAAAAGGGTTCTCTTTGTCCGGAGCTTGATCCGCGAAGTTGCTGGTTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAGGTTGGAAAAGACAAGCGTGCTCTGAAGGTAGCCAAGAGAAAGCTTGGAACTCACAAGAGAGCTAAGAAGAAGCGTGAGGAGATGTCCAACGTTCTAAGAAAGATGAGGGCTGGTGGAGGTGGTGAGAAGAAGAAGTGA

Coding sequence (CDS)

ATGGCTCCAAAACAGCCGAATACAGGCCTTTTTGTTGGCCTGAACAAGGGCCATATAGTCACCAAGAAGGAGCTGGCCCCTCGGCCCTCTGATCGCAAAGGAAAAACGAGTAAAAGGGTTCTCTTTGTCCGGAGCTTGATCCGCGAAGTTGCTGGTTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAGGTTGGAAAAGACAAGCGTGCTCTGAAGGTAGCCAAGAGAAAGCTTGGAACTCACAAGAGAGCTAAGAAGAAGCGTGAGGAGATGTCCAACGTTCTAAGAAAGATGAGGGCTGGTGGAGGTGGTGAGAAGAAGAAGTGA

Protein sequence

MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK

Homology

[Close]

BLAST of Spg038564 vs. NCBI nr
Match: KAG6579388.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207.6 bits (527), Expect = 5.5e-50
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 50  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 109

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK
Sbjct: 110 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 159

[Close]

BLAST of Spg038564 vs. NCBI nr
Match: XP_022922109.1 (60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022973014.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_023549776.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >KAG7016868.1 60S ribosomal protein L36-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207.6 bits (527), Expect = 5.5e-50
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 110

[Close]

BLAST of Spg038564 vs. NCBI nr
Match: XP_010108352.1 (60S ribosomal protein L36-2 [Morus notabilis] >XP_024029217.1 60S ribosomal protein L36-2 [Morus notabilis] >EXC19143.1 60S ribosomal protein L36-2 [Morus notabilis])

HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGKTSKRV FVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 110

[Close]

BLAST of Spg038564 vs. NCBI nr
Match: KAG7013242.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.1 bits (523), Expect = 1.6e-49
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 2   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 61

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRAGGGGEKKK
Sbjct: 62  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111

[Close]

BLAST of Spg038564 vs. NCBI nr
Match: KAG6574185.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206.1 bits (523), Expect = 1.6e-49
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1    MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
            MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 965  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 1024

Query: 61   TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 111
            TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRAGGGGEKKK
Sbjct: 1025 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 1074

[Close]

BLAST of Spg038564 vs. ExPASy Swiss-Prot
Match: Q9M352 (60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 3.3e-42
Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG--EKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of Spg038564 vs. ExPASy Swiss-Prot
Match: Q9LZ57 (60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.1e-40
Identity = 87/105 (82.86%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VTK+E  PRP++RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG--EKKK 111
           KDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GG G  EKKK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108

[Close]

BLAST of Spg038564 vs. ExPASy Swiss-Prot
Match: O80929 (60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 9.1e-40
Identity = 87/105 (82.86%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VT++ELAPRP+ RKGKTSKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGG---GEKK 110
           KDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+ GG    EKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

[Close]

BLAST of Spg038564 vs. ExPASy Swiss-Prot
Match: P52866 (60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 5.7e-34
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKR  FVR+LIREVAGF PYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 92
          TELLKVGKDKRALKV + K+G H +  K+ E
Sbjct: 61 TELLKVGKDKRALKVRQEKVG-HSQESKEEE 90

[Close]

BLAST of Spg038564 vs. ExPASy Swiss-Prot
Match: Q9LRB8 (60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.2e-29
Identity = 69/96 (71.88%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 12  VGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKR 71
           VGLNKGH VTKK   PRPS RKG  S+RV  VR+++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 72  ALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGE 108
           ALK+ KRKLGTH R KKKREEM+ VLRKM+A   GE
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101

[Close]

BLAST of Spg038564 vs. ExPASy TrEMBL
Match: A0A6J1IDA3 (60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111471531 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.6e-50
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 110

[Close]

BLAST of Spg038564 vs. ExPASy TrEMBL
Match: A0A6J1E2F7 (60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111430179 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.6e-50
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 110

[Close]

BLAST of Spg038564 vs. ExPASy TrEMBL
Match: W9SA20 (60S ribosomal protein L36 OS=Morus notabilis OX=981085 GN=L484_006508 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 5.9e-50
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGH+VTKKELAPRPSDRKGKTSKRV FVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 110

[Close]

BLAST of Spg038564 vs. ExPASy TrEMBL
Match: A0A6J1H2C5 (60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111459396 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 7.7e-50
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Spg038564 vs. ExPASy TrEMBL
Match: A0A6J1K6N3 (60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111491152 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 7.7e-50
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS+VLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Spg038564 vs. TAIR 10
Match: AT3G53740.2 (Ribosomal protein L36e family protein )

HSP 1 Score: 172.2 bits (435), Expect = 2.4e-43
Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG--EKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of Spg038564 vs. TAIR 10
Match: AT3G53740.3 (Ribosomal protein L36e family protein )

HSP 1 Score: 172.2 bits (435), Expect = 2.4e-43
Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG--EKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of Spg038564 vs. TAIR 10
Match: AT3G53740.4 (Ribosomal protein L36e family protein )

HSP 1 Score: 172.2 bits (435), Expect = 2.4e-43
Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG--EKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of Spg038564 vs. TAIR 10
Match: AT5G02450.1 (Ribosomal protein L36e family protein )

HSP 1 Score: 165.2 bits (417), Expect = 2.9e-41
Identity = 87/105 (82.86%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VTK+E  PRP++RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGG--EKKK 111
           KDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GG G  EKKK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108

[Close]

BLAST of Spg038564 vs. TAIR 10
Match: AT2G37600.1 (Ribosomal protein L36e family protein )

HSP 1 Score: 164.1 bits (414), Expect = 6.4e-41
Identity = 87/105 (82.86%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VT++ELAPRP+ RKGKTSKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGG---GEKK 110
           KDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+ GG    EKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

The following BLAST results are available for this feature:

BLAST of Spg038564 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579388.1	5.5e-50	99.09	60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022922109.1	5.5e-50	99.09	60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022973014.1 60S riboso...	[more]
XP_010108352.1	1.2e-49	98.18	60S ribosomal protein L36-2 [Morus notabilis] >XP_024029217.1 60S ribosomal prot...	[more]
KAG7013242.1	1.6e-49	98.18	60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6574185.1	1.6e-49	98.18	60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Spg038564 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M352	3.3e-42	81.25	60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1	[more]
Q9LZ57	4.1e-40	82.86	60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1	[more]
O80929	9.1e-40	82.86	60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1	[more]
P52866	5.7e-34	83.52	60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2	[more]
Q9LRB8	7.2e-29	71.88	60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1	[more]

BLAST of Spg038564 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IDA3	2.6e-50	99.09	60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111471531 PE=3 SV=1	[more]
A0A6J1E2F7	2.6e-50	99.09	60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111430179 PE=3 SV=...	[more]
W9SA20	5.9e-50	98.18	60S ribosomal protein L36 OS=Morus notabilis OX=981085 GN=L484_006508 PE=3 SV=1	[more]
A0A6J1H2C5	7.7e-50	98.18	60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111459396 PE=3 SV=...	[more]
A0A6J1K6N3	7.7e-50	98.18	60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111491152 PE=3 SV=1	[more]

BLAST of Spg038564 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53740.2	2.4e-43	81.25	Ribosomal protein L36e family protein	[more]
AT3G53740.3	2.4e-43	81.25	Ribosomal protein L36e family protein	[more]
AT3G53740.4	2.4e-43	81.25	Ribosomal protein L36e family protein	[more]
AT5G02450.1	2.9e-41	82.86	Ribosomal protein L36e family protein	[more]
AT2G37600.1	6.4e-41	82.86	Ribosomal protein L36e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038097	Ribosomal protein L36e domain superfamily	GENE3D	1.10.10.1760	60S ribosomal protein L36	coord: 1..105 e-value: 3.9E-45 score: 154.5
IPR000509	Ribosomal protein L36e	PFAM	PF01158	Ribosomal_L36e	coord: 8..101 e-value: 3.3E-43 score: 145.8
IPR000509	Ribosomal protein L36e	PANTHER	PTHR10114	60S RIBOSOMAL PROTEIN L36	coord: 1..110
IPR000509	Ribosomal protein L36e	PROSITE	PS01190	RIBOSOMAL_L36E	coord: 55..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..110
None	No IPR available	PANTHER	PTHR10114:SF14	60S RIBOSOMAL PROTEIN L36-1-RELATED	coord: 1..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg038564.1	Spg038564.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome