Spg038558 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg038558
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	homeobox-leucine zipper protein HDG11-like isoform X2
Location	scaffold12: 3219023 .. 3220103 (-)
RNA-Seq Expression	Spg038558
Synteny	Spg038558

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAATGTTATTAGGAGTGACCATATTAAATAATTATCTCAAAAGATGATATTTTTAAAAAAAGAAAAAAGAAAAAAAAATGTTATTTGAATATTGAAACGGAAAGAAAAGGGAAAAAGCGAAGATTTGAATATCGAAAATTTCCTTTTCAACGGTTTCAAACGTTTGTCGCAAAATTCAATAAGCTCCTAAAATCCCACGGAGCCCTAAATTCCAGTTGTCGTTCATGTAGGAGAAAAATTTCTCAAGGTTTCTGACACAATCCGAAGCTTGAAAAAGCCAGGAACGTATCTCTGAATTTTGACTATTTTGATTTCCCTTTGGGTGTTGTCGTCATTATCTTCTTTTCAATTGTTGTTTTTAGCAATGCGATACGAAATGATTCACTGGAAATTGAACTTCAACTTTGCATGGGGAATCAACCTCAGTTTCTTCATCCTTCTTCCTCCCAATCCATTGGCTGCTTTTCTGCATTCGGTACTTTCTCTCTCTAGAATTCAATTTCTCTTTTACCCCACCCCGTTTTTCGCCGATTTTTGGATGTTTTCTTCTGTCGAGTTAACAAGTGGACTTCAACGGTTTCACTTCCCTTGCTGGAATCTGCAAGAACTTTAACAGAGGTAGAGAGAGAGAGAGAGTAAAAGAGAGAGTTGCACATACCAATTAACCCCAAAAAATACCAAATCCAATACCCAACTCAGAGATATCTCTCCATTTATTGCGTTTGTTTTGGTGTTGATTTGGTATCCTTATTTGGAAATTGGACTCGACCCTCTCTTGATGCTATGTATTCTATTTATCCTGTCTGTGATTTTCAATGTTGTGTACAAACGAGTACAGGCCGTGCGAATAGAAGTTTTCGCGACTCCCATTTTTGGGAACTTGGAGGGAAGAAAAGAGAAGTTGCAGTTCTTTCGTTTAGTGGGTTTTCTACTGGTTTGTCAGGATGGATTTTATGATGGAGGGTCGCGGGGGTAATGGCGGTGGGTCAGGTGATGAACAAGAAGCATCTAACGATCGCAAGGGGAAGAAGACTTACCATCGCCATACTCCTTACCAGATTCAGCAACTTGAATCGTGA

mRNA sequence

ATGCGATACGAAATGATTCACTGGAAATTGAACTTCAACTTTGCATGGGGAATCAACCTCAGTTTCTTCATCCTTCTTCCTCCCAATCCATTGGCTGCTTTTCTGCATTCGTGGGTTTTCTACTGGTTTGTCAGGATGGATTTTATGATGGAGGGTCGCGGGGGTAATGGCGGTGGGTCAGGTGATGAACAAGAAGCATCTAACGATCGCAAGGGGAAGAAGACTTACCATCGCCATACTCCTTACCAGATTCAGCAACTTGAATCGTGA

Coding sequence (CDS)

ATGCGATACGAAATGATTCACTGGAAATTGAACTTCAACTTTGCATGGGGAATCAACCTCAGTTTCTTCATCCTTCTTCCTCCCAATCCATTGGCTGCTTTTCTGCATTCGTGGGTTTTCTACTGGTTTGTCAGGATGGATTTTATGATGGAGGGTCGCGGGGGTAATGGCGGTGGGTCAGGTGATGAACAAGAAGCATCTAACGATCGCAAGGGGAAGAAGACTTACCATCGCCATACTCCTTACCAGATTCAGCAACTTGAATCGTGA

Protein sequence

MRYEMIHWKLNFNFAWGINLSFFILLPPNPLAAFLHSWVFYWFVRMDFMMEGRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLES

Homology

[Close]

BLAST of Spg038558 vs. NCBI nr
Match: XP_022984098.1 (homeobox-leucine zipper protein HDG11-like isoform X1 [Cucurbita maxima] >XP_022984099.1 homeobox-leucine zipper protein HDG11-like isoform X1 [Cucurbita maxima] >XP_022984100.1 homeobox-leucine zipper protein HDG11-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-16
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 39 VFYWFVRMDFMMEGRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLES 90
          + YW VRMDFMMEGRG  GGGSGDEQEASNDRKGKKTYHRH PYQIQQLES
Sbjct: 45 ISYWLVRMDFMMEGRGSYGGGSGDEQEASNDRKGKKTYHRHNPYQIQQLES 95

[Close]

BLAST of Spg038558 vs. NCBI nr
Match: XP_022984101.1 (homeobox-leucine zipper protein HDG11-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-16
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 39 VFYWFVRMDFMMEGRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLES 90
          + YW VRMDFMMEGRG  GGGSGDEQEASNDRKGKKTYHRH PYQIQQLES
Sbjct: 45 ISYWLVRMDFMMEGRGSYGGGSGDEQEASNDRKGKKTYHRHNPYQIQQLES 95

[Close]

BLAST of Spg038558 vs. NCBI nr
Match: XP_022984103.1 (homeobox-leucine zipper protein HDG11-like isoform X4 [Cucurbita maxima])

HSP 1 Score: 95.5 bits (236), Expect = 2.4e-16
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 39 VFYWFVRMDFMMEGRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLES 90
          + YW VRMDFMMEGRG  GGGSGDEQEASNDRKGKKTYHRH PYQIQQLES
Sbjct: 45 ISYWLVRMDFMMEGRGSYGGGSGDEQEASNDRKGKKTYHRHNPYQIQQLES 95

[Close]

BLAST of Spg038558 vs. NCBI nr
Match: XP_022143367.1 (homeobox-leucine zipper protein HDG11-like [Momordica charantia])

HSP 1 Score: 87.0 bits (214), Expect = 8.7e-14
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 46 MDFMMEGRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLES 90
          MDF+MEGRGGNG GSGDEQEASNDRKGKK+YHRHTPYQIQQLES
Sbjct: 1  MDFVMEGRGGNGAGSGDEQEASNDRKGKKSYHRHTPYQIQQLES 44

[Close]

BLAST of Spg038558 vs. NCBI nr
Match: XP_022935490.1 (homeobox-leucine zipper protein HDG11-like isoform X2 [Cucurbita moschata] >XP_023528657.1 homeobox-leucine zipper protein HDG11-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 85.1 bits (209), Expect = 3.3e-13
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 46 MDFMMEGRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLES 90
          MDFMMEGRG  GGGSGDEQEASNDRKGKKTYHRH PYQIQQLES
Sbjct: 1  MDFMMEGRGSYGGGSGDEQEASNDRKGKKTYHRHNPYQIQQLES 44

[Close]

BLAST of Spg038558 vs. ExPASy Swiss-Prot
Match: A2YR02 (Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. indica OX=39946 GN=ROC7 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.9e-05
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 47  DFMMEGRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLES 90
           D +  G GG GGGSGD+Q+  N R  KK YHRHT +QIQ+LE+
Sbjct: 64  DNLESGGGGGGGGSGDDQD-PNQRPRKKRYHRHTQHQIQELEA 105

[Close]

BLAST of Spg038558 vs. ExPASy Swiss-Prot
Match: A3BPF2 (Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. japonica OX=39947 GN=ROC7 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-04
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 47  DFMMEGRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLES 90
           D +  G GG GGGSG +Q+  N R  KK YHRHT +QIQ+LE+
Sbjct: 64  DNLESGGGGGGGGSGGDQD-PNQRPRKKRYHRHTQHQIQELEA 105

[Close]

BLAST of Spg038558 vs. ExPASy TrEMBL
Match: A0A6J1J7R8 (homeobox-leucine zipper protein HDG11-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482512 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-16
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 39 VFYWFVRMDFMMEGRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLES 90
          + YW VRMDFMMEGRG  GGGSGDEQEASNDRKGKKTYHRH PYQIQQLES
Sbjct: 45 ISYWLVRMDFMMEGRGSYGGGSGDEQEASNDRKGKKTYHRHNPYQIQQLES 95

[Close]

BLAST of Spg038558 vs. ExPASy TrEMBL
Match: A0A6J1J9L3 (homeobox-leucine zipper protein HDG11-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111482512 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-16
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 39 VFYWFVRMDFMMEGRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLES 90
          + YW VRMDFMMEGRG  GGGSGDEQEASNDRKGKKTYHRH PYQIQQLES
Sbjct: 45 ISYWLVRMDFMMEGRGSYGGGSGDEQEASNDRKGKKTYHRHNPYQIQQLES 95

[Close]

BLAST of Spg038558 vs. ExPASy TrEMBL
Match: A0A6J1J4A0 (homeobox-leucine zipper protein HDG11-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482512 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-16
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 0


Query: 39 VFYWFVRMDFMMEGRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLES 90
          + YW VRMDFMMEGRG  GGGSGDEQEASNDRKGKKTYHRH PYQIQQLES
Sbjct: 45 ISYWLVRMDFMMEGRGSYGGGSGDEQEASNDRKGKKTYHRHNPYQIQQLES 95

[Close]

BLAST of Spg038558 vs. ExPASy TrEMBL
Match: A0A6J1CQL3 (homeobox-leucine zipper protein HDG11-like OS=Momordica charantia OX=3673 GN=LOC111013253 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.2e-14
Identity = 41/44 (93.18%), Postives = 43/44 (97.73%), Query Frame = 0


Query: 46 MDFMMEGRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLES 90
          MDF+MEGRGGNG GSGDEQEASNDRKGKK+YHRHTPYQIQQLES
Sbjct: 1  MDFVMEGRGGNGAGSGDEQEASNDRKGKKSYHRHTPYQIQQLES 44

[Close]

BLAST of Spg038558 vs. ExPASy TrEMBL
Match: A0A6J1F5J9 (homeobox-leucine zipper protein HDG11-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442346 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 46 MDFMMEGRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLES 90
          MDFMMEGRG  GGGSGDEQEASNDRKGKKTYHRH PYQIQQLES
Sbjct: 1  MDFMMEGRGSYGGGSGDEQEASNDRKGKKTYHRHNPYQIQQLES 44

[Close]

BLAST of Spg038558 vs. TAIR 10
Match: AT1G73360.1 (homeodomain GLABROUS 11 )

HSP 1 Score: 41.6 bits (96), Expect = 3.9e-04
Identity = 23/38 (60.53%), Postives = 26/38 (68.42%), Query Frame = 0


Query: 52 GRGGNGGGSGDEQEASNDRKGKKTYHRHTPYQIQQLES 90
          G GG+GGGS     +  DRK KK YHRHT  QIQ+LES
Sbjct: 13 GSGGDGGGSHHHDGSETDRK-KKRYHRHTAQQIQRLES 49

[Close]

BLAST of Spg038558 vs. TAIR 10
Match: AT3G03260.1 (homeodomain GLABROUS 8 )

HSP 1 Score: 41.2 bits (95), Expect = 5.1e-04
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 0


Query: 57 GGGSGDEQEASNDRK--GKKTYHRHTPYQIQQLES 90
          GG SG+EQ  S D K  GK+T HRHTP QIQ+LE+
Sbjct: 6  GGSSGNEQYTSGDAKQNGKRTCHRHTPQQIQRLEA 40

The following BLAST results are available for this feature:

BLAST of Spg038558 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984098.1	2.4e-16	88.24	homeobox-leucine zipper protein HDG11-like isoform X1 [Cucurbita maxima] >XP_022...	[more]
XP_022984101.1	2.4e-16	88.24	homeobox-leucine zipper protein HDG11-like isoform X2 [Cucurbita maxima]	[more]
XP_022984103.1	2.4e-16	88.24	homeobox-leucine zipper protein HDG11-like isoform X4 [Cucurbita maxima]	[more]
XP_022143367.1	8.7e-14	93.18	homeobox-leucine zipper protein HDG11-like [Momordica charantia]	[more]
XP_022935490.1	3.3e-13	93.18	homeobox-leucine zipper protein HDG11-like isoform X2 [Cucurbita moschata] >XP_0...	[more]

BLAST of Spg038558 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2YR02	5.9e-05	58.14	Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. indica OX=39946 GN=R...	[more]
A3BPF2	3.8e-04	55.81	Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of Spg038558 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7R8	1.2e-16	88.24	homeobox-leucine zipper protein HDG11-like isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A6J1J9L3	1.2e-16	88.24	homeobox-leucine zipper protein HDG11-like isoform X4 OS=Cucurbita maxima OX=366...	[more]
A0A6J1J4A0	1.2e-16	88.24	homeobox-leucine zipper protein HDG11-like isoform X2 OS=Cucurbita maxima OX=366...	[more]
A0A6J1CQL3	4.2e-14	93.18	homeobox-leucine zipper protein HDG11-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1F5J9	1.6e-13	93.18	homeobox-leucine zipper protein HDG11-like isoform X1 OS=Cucurbita moschata OX=3...	[more]

BLAST of Spg038558 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73360.1	3.9e-04	60.53	homeodomain GLABROUS 11	[more]
AT3G03260.1	5.1e-04	62.86	homeodomain GLABROUS 8	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg038558.1	Spg038558.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0008289	lipid binding