Spg038550 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg038550
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Methyl-CpG-binding domain-containing protein 13 isoform X1
Location	scaffold12: 5037029 .. 5042978 (-)
RNA-Seq Expression	Spg038550
Synteny	Spg038550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAATCTTCCGATAAAATCCTTCCGTCCAAAAACCGACTCCATTTTCTCCTCCGTTGCTTCGGATCTTCCCCAAAAGTTCACAGCCAGAAGGCTCCGGCGACCGGCCGACGGAACCGACGGGTTCCGTCGCTCAGGTTCCGATTCAACAAGTCCTCTGCAACTGTGCCGGTCGACGCCGCCGTGCCGGAGATCGCAGTGCTATGTGACGATGACGCCTCTTTTTCGCCGGACTTCAAGAAACCGCCGCCACCGCCGCCGGTTACGTCCAGAGCTCCGGCCGTCCGAGCCGAGATCGTCGAGTCGATAAAGCCGAGTCAAACTCGGAAGAAAACAGAGTCAACTCAGTCCGAATCCAAGGCAGAGAGAATTCCTCCGGCGAAAAGAACCGCCGCGTTGTTGCACTCCGTCTCTCTTCCTTCCCCGAGACTAAGCGGCCAAAAAGATTTGAAAAAAACAGTCTCTCATCTCCCCTGCGCCGCCGCGCCGCCGTCCTCCGACCGGCTGAAACCGGCGCCAAAGCCGTCGACGAATTCTCCGGCCACGAAATTCGATCCGGTGATTGTGATTGTTGCGCTGGCGATGGTGGTGCTGTGGGGGCGACTCTGCGCCATACTCTGCACGTCGGCGCTGTTTTACTTCGGCCGCCGGCGGAGGTCAGAAGTTGAACGAGACGGCGGCGGCGGCGGTTTTGGAAGGGTTTCTTGAGATGTTTACGGGAAGTTACGTTTGACGGTTATGGGAAACCGCCATGTGAGGAAAGCTTGGAGAATATTTTAATGGCGGAAGTGGCAGTTTGTTAAGCTGATTTTTGTAAATTAATGGCAAGAGTTCAAACATTGTAAAACTAATAATTTAACTTATAATATATATATATAAATAGTAAGAAAAATAAAATGCACTAATTAGCTATTTTCATTCTTTATGGTGTAAATATATATTTGTTATATATATATATATATATATATATATATGAGTTCAACCGCATTCGGGACGGGATTTGAATCTCTCACGATGGATCGAGGGTGTATATCAATTACAACTATGCTCACTTTTGACCATATTTATATATACACACTAATGCAATATGAATATAACATTGACCAAAAAATTAAGGCCCCGTTTGATAACCATTTCGTTTTTAGTTTTTGGTTTTTGAAAATTAAGCCTATAAACACTACTTTTATCTACATGTTTCTTCATTTTGTTATCTATGTCATTTCCTTGTTTTCAAAAACCAAGTCAAATTTTGAAAACTAAAAAAAGTAGTTTTCAAAAACTTGTTTTTGTTTTTAGAATTTGACTAGAAATTCAAATGTGTCCTTAATAAAGATGAAAACTATTGTAAGAAAATTGGGAGGAAACAAGCATAATTTTCAAAAACCAAAAACCAAAAATGAAATGGTTATCAAACGGGGCCTAAGAGATTTAAATATCTACCCTCACATGTTATTGAATCGGAAGAAATATTGTTTTCGTATATGAATTTTGAAGTTTCTTCCCTTTTGGTTGTTTAGGTTTGATAGCTATTTCCTTTTTTTATTTTGAAAGTTACGGTTTGTTTTATATCGATTTAATTATTAGCCATATTTTAAACAGAACTTTTTTTTTTTTTTTTTTAAATTACTTTTTTACTTTTCAAAACTTACGTTGACTTTTAAAATTGTGGTGAAAAGGTAAGTGGTGATAAATAATAATAATAATTTTAAATTTATAAATTGAAATAAAGGTCTAAAATAGCACCGACTGGGATTTAAAATATATATATATATATATTAAAAAAAAAACTTTTGTTTTTTGTTTTTTTGACAGCAATTTATTTATTCTTTTTGAAGCATTATTTCGTTCATTTATGTAAGTTAATTAATCTTGTTTTTAACTGCCCGGTCGTTGTCAACTCTTCTTGATTGTCTAATTGACTTATATTTCTATATTTATATCTTTTTTCCGATTAAAAAACTGCAAAATTTAGCGTATAGAACCATCTTTCTACTGGCTTCATTATTATTTATTATGCATGAATATCCATTATTTTAAGGGATTCATTATATTTGTACTTCAAAATTGCATAACCATTATTTTAAGGGATTCATTATATTTGTACTTCAAAAATTTAATTTCATCTATCTATTTTAATATTTTGATTTTTCCTTTCGTCTCAAATTTCTTCTTTTGCACTTTTTAATTTGAACAATGAACGGGATTCGACGTAAATGACCTTACTGTTCCAACTTCTACCAACACTATTTATTACTCTAACTTTATTGTAAAAATTTATTGGAACTCTTCCACATTCTGTATTACCCTAACTTCAACTAAAAATTAACTGGAATTAACCTTAATCATCCTTTATAAATTTGATAAAATTGTTCAAAGAAAAAAAAAAAAAACTCTCCACATCATATCATATAATCTATCCACAGTTGGATATAGAAAGAACATAACGATGTACTGTTGTAGCAAAGTACATAAGTGAGACCAAGGTATGCAACGGTAACAAAAAAAAAAGGTGATGGATAATTTTTGTAATTAATTTTGAGAAAACCTTTATGAGAGAGTGTGTTGTTTGCTGAGGATATAACGTTTTTGGAAAGGATATGTCCTTCATGAAAATATATAGCTTCGTGTGGAGAGATATGTAGATAGTTCGTAAATACATGGGTTATTCAGTAGTGAATATTTTTTTTTTGTCCTCGATGGTTCCTATGTTGATGTACAAAATTAGCAAAGGAAAAAATGTTTGACATGCATGTGCTTCAACCGTAAATTTATTGATTTGAAGGGAAGAGGTGACGTGCAAAGTAGTAAATACTGCATATCGATGTTTTCACATGAATCGTTTTTACAATTGTTTGCATAAAAGTTAATATTAAAATAATGGATCGAAAATCACTTAAACATATTATGATATTTATGATCATTTGACATATGTTAGATTCATCTCGATACACTGTATTCAAACAAACTTGCAATCAAAGTTAAATTTAAGAAAAAGTAACCAAGCACACTGACATAGTAACTAAAATAACTTTTATAAAAGGCGCCTATTAAGAGAAAGATATTTAACTAGCAAGACTTATCTTTTGTATGGTACTCGTATCGAATTTTCATTGACATGTCTATATTTTCACACTGTCCATGAATTCGATATCGACATGAGAGCTGAATTGACATTTTTATTATATCGTAAAGAAATTGATAAAATATAAAAAAAATGTAATTGAGGTGAAGAAGATATCAATAATAAATATTTTAACTTTTTTAAAAAATGATTTTTTAATTTATTTAAATATCTTTAATTCACCAACATTTTTCGTTAGTATTGATTTTTAACCCTTAAATTGAAATTATTAAAAGACATATGATGAGATGGAAAAAAGAATCAAGAAAAAGAGAAGAAGAAATGGGTCCCGAAGGAAAACGTTTTTTTTTTAGGAAAAAAAAAAGCGTTAAAAATTAAAATTTAAATAACAGAACAAATAATTTTAAAAAAAAATTCATAAAACACGTGTAGGGCACGTGATGATTTACTATTTAAATCATTTGATTGCATCGGTTCCATTTCAAAATCCCTCTTGAAAAGTACCGTTAAAAAATTCTCCCTTTCTGTTTTCTCTGAGGGCCGTCGTCTTCTCTTACGGCTGCCATTGACGCTCGGCTCAGAGGCCGTCCATCGCCATTTTTGCGGCTGGAAATTGCGTTCTGATTGGGCGTTTTAGAGTTGGCATAATTTTTACACCAGTGATTATGTGGGAAGAATGAATGGAAAGAGAGATTGCCTTCCAGAATCCAGACGAATAAATGTTTCTTCATGTGGTTATCACTACTTTTTGGGCTTCTTATTTACTAATCACATATACACTTCATAAACCTAATTTTGTGACCATTTGTGCGTAGGTAATTCAGTGTTTCTCTGCCGGAGCGATTACTTAGAGTTTGAAATATCAGAATCAGATTATTCTTTTCAAGGTATATTTTGAAATTCTATATTTATTGTAACTAGAAAGCCATTGTAACTAAAAACATAACCATGACCTAAATTTTTTAGGCTTAAAGAAGATAAAATCACTAGCAACCAGAAGGTCAGTAGTCGATTTCGAATGACTAACCAGCTAGAGAAATGGGTTTCTTGAGTTTAGATGTGTACTCTTAACATCTATCTGGACTGGGCTCGCAGGTTTAAGTTTCCGGAGGAAGGGGTAAAACCATAAACTAATATTGATACGGATGAGAAGGGCCTTGTGGAATGGTATTCAACTGTCATCCATTCATGTAGCTTTTTTACTGCTATTCAGAGTTGTGTGTGTGTGTGTACAATTCTCAAAAATGCTGTTGGTGAATGTTGAAGATGTGTTTCTTTGTAGTTGTTAGAAACTGGGACTTCTGATGGGAAAACATTGGAGCTATTTTATTTGATTGTGTAGGCTGTAAAAGGAGGGGATAGATGACTAATTTGTGCAGGGATTTTTAGGGGAGAAAGGTGTGGTCTGTTGGTATTCTTTGTGATATGACACTAATTAGCTAAACCATTCCCTATAACTTTCTGATCTGAGTAAATGACTTGACTTCTTCTTGCTCCTATGGCTATGTTGCTAATCCTTGACCCAGTATACTTATCAGTTTAAAGGTTCTATTTGCATTTTGAATGAACTTTTCTTTTTATCCCTTTTTAGGTCATTTCTGTTTAGTAAGCAGCAATCTGTAGTATCATTTTTTGTTGAGATTGGAAAAGGCAACATAACATACTTTCACTCATGCTTGACAACATAACACAGTTCTTCCTATTCTATAATGTCTTTTAGTTAGTGACATGCTAAACAAAATGAACTTTTGTTTGCAGTTTTACATTGATCCTGATAATGGAAATGCACTTCACTCGATATGGGATGTACATCAGTATCTTACAACTGGAAAAGTGTGCCGGTTAGCAAATAAATTAAGGAACCAGAGAGACAGCAATATCAAGTTTCAACATGATGATATCTCTGCAAGTGCTCTCAAGGTACTCCAAGTTTATATTCCTAAAATTTTATATAATGAGACTGTTCATCAGTTGTGGTGTAGCCGTATACTTGTAATAACCCTTATTCTTTTATTTTACTAAGTCGTGTGCCAACCACATGCCTTGTAACTACTTTAGTTAGGATCCTTGCATATTTAAGGGCAAGTGATTATCAATAAAGGGGTATCATTTGTTATTATTCTAAAACAAGTCTACGGCTCCACCAAGTTGTTCAAACCATCCGTTGAGAAAATATGCTTAATACTTTGGAGTGATTCCTTTTCCCATTATATTTCTCAAAGGAGGATTCTTTCTTGCTAATGATGCAATCAAGTATCTCCTTTGTGCTCATGGCTGAATTTTGGGTGAATTCATCTCGTCTAAGATATATACATAAATTTTGGTTTGCAATAATGGAACCCACAAACACTTTTCTAGCTGCTTGCCAATCTGACTTTTCCAACAATAGCTATTACACTTGTGCAAGGTCTCCCTCTTGATCTTCAAGGATTAGACTGTGGACTTGAGATTTTTAAGGTTTCTGAAACAATTTGAATACTTGCCCCTAAACCTGATAAAAAGTTTTCAATTTTATTCTTAATTATTATGTTAATTTGACTAGTTGCATTAAACATTCCCTGTTTCTAAGGTATCTTAAACCAAAATGCAAAATGAAATTTGTTTTAAACTCAAGTTTGACTATCTTTGCCCTTTCACTAATTTTTTTTTCTTTCCTTCTCTCTCTTAGTTGCCTGCTGGCCTCAAGAAAGAGATGCAAATGATTGGCAAAGCAAGGAGACAAATCTATGGAGTGAGAGTTCACTAGAACCCAGTGAAATAACAAATGATGGAGCTATTTTTCCAAATGCTACGACTGTTGGAGAAAGCATGCCTCTTCCCGTACCTAATTCCGATCATGGTATAGTTCTAAATATTGAGCTTTAG

mRNA sequence

ATGGCGGAATCTTCCGATAAAATCCTTCCGTCCAAAAACCGACTCCATTTTCTCCTCCGTTGCTTCGGATCTTCCCCAAAAGTTCACAGCCAGAAGGCTCCGGCGACCGGCCGACGGAACCGACGGGTTCCGTCGCTCAGGTTCCGATTCAACAAGTCCTCTGCAACTGTGCCGGTCGACGCCGCCGTGCCGGAGATCGCAGTGCTATGTGACGATGACGCCTCTTTTTCGCCGGACTTCAAGAAACCGCCGCCACCGCCGCCGGTTACGTCCAGAGCTCCGGCCGTCCGAGCCGAGATCGTCGAGTCGATAAAGCCGAGTCAAACTCGGAAGAAAACAGAGTCAACTCAGTCCGAATCCAAGGCAGAGAGAATTCCTCCGGCGAAAAGAACCGCCGCGTTGTTGCACTCCGTCTCTCTTCCTTCCCCGAGACTAAGCGGCCAAAAAGATTTGAAAAAAACAGTCTCTCATCTCCCCTGCGCCGCCGCGCCGCCGTCCTCCGACCGGCTGAAACCGGCGCCAAAGCCGTCGACGAATTCTCCGGCCACGAAATTCGATCCGGTGATTGTGATTGTTGCGCTGGCGATGGTGGTGCTGTGGGGGCGACTCTGCGCCATACTCTGCACGTCGGCGCTGTTTTACTTCGGCCGCCGGCGGAGGTTTAAGTTTCCGGAGGAAGGGTTTTACATTGATCCTGATAATGGAAATGCACTTCACTCGATATGGGATGTACATCAGTATCTTACAACTGGAAAAGTGTGCCGGTTAGCAAATAAATTAAGGAACCAGAGAGACAGCAATATCAAGTTTCAACATGATGATATCTCTGCAAGTGCTCTCAAGGTACTCCAAGTTTATATTCCTAAAATTTTATATAATGAGACTGTTCATCAGTTGTGGTTTGCCTGCTGGCCTCAAGAAAGAGATGCAAATGATTGGCAAAGCAAGGAGACAAATCTATGGAGTGAGAGTTCACTAGAACCCAGTGAAATAACAAATGATGGAGCTATTTTTCCAAATGCTACGACTGTTGGAGAAAGCATGCCTCTTCCCGTACCTAATTCCGATCATGGTATAGTTCTAAATATTGAGCTTTAG

Coding sequence (CDS)

ATGGCGGAATCTTCCGATAAAATCCTTCCGTCCAAAAACCGACTCCATTTTCTCCTCCGTTGCTTCGGATCTTCCCCAAAAGTTCACAGCCAGAAGGCTCCGGCGACCGGCCGACGGAACCGACGGGTTCCGTCGCTCAGGTTCCGATTCAACAAGTCCTCTGCAACTGTGCCGGTCGACGCCGCCGTGCCGGAGATCGCAGTGCTATGTGACGATGACGCCTCTTTTTCGCCGGACTTCAAGAAACCGCCGCCACCGCCGCCGGTTACGTCCAGAGCTCCGGCCGTCCGAGCCGAGATCGTCGAGTCGATAAAGCCGAGTCAAACTCGGAAGAAAACAGAGTCAACTCAGTCCGAATCCAAGGCAGAGAGAATTCCTCCGGCGAAAAGAACCGCCGCGTTGTTGCACTCCGTCTCTCTTCCTTCCCCGAGACTAAGCGGCCAAAAAGATTTGAAAAAAACAGTCTCTCATCTCCCCTGCGCCGCCGCGCCGCCGTCCTCCGACCGGCTGAAACCGGCGCCAAAGCCGTCGACGAATTCTCCGGCCACGAAATTCGATCCGGTGATTGTGATTGTTGCGCTGGCGATGGTGGTGCTGTGGGGGCGACTCTGCGCCATACTCTGCACGTCGGCGCTGTTTTACTTCGGCCGCCGGCGGAGGTTTAAGTTTCCGGAGGAAGGGTTTTACATTGATCCTGATAATGGAAATGCACTTCACTCGATATGGGATGTACATCAGTATCTTACAACTGGAAAAGTGTGCCGGTTAGCAAATAAATTAAGGAACCAGAGAGACAGCAATATCAAGTTTCAACATGATGATATCTCTGCAAGTGCTCTCAAGGTACTCCAAGTTTATATTCCTAAAATTTTATATAATGAGACTGTTCATCAGTTGTGGTTTGCCTGCTGGCCTCAAGAAAGAGATGCAAATGATTGGCAAAGCAAGGAGACAAATCTATGGAGTGAGAGTTCACTAGAACCCAGTGAAATAACAAATGATGGAGCTATTTTTCCAAATGCTACGACTGTTGGAGAAAGCATGCCTCTTCCCGTACCTAATTCCGATCATGGTATAGTTCTAAATATTGAGCTTTAG

Protein sequence

MAESSDKILPSKNRLHFLLRCFGSSPKVHSQKAPATGRRNRRVPSLRFRFNKSSATVPVDAAVPEIAVLCDDDASFSPDFKKPPPPPPVTSRAPAVRAEIVESIKPSQTRKKTESTQSESKAERIPPAKRTAALLHSVSLPSPRLSGQKDLKKTVSHLPCAAAPPSSDRLKPAPKPSTNSPATKFDPVIVIVALAMVVLWGRLCAILCTSALFYFGRRRRFKFPEEGFYIDPDNGNALHSIWDVHQYLTTGKVCRLANKLRNQRDSNIKFQHDDISASALKVLQVYIPKILYNETVHQLWFACWPQERDANDWQSKETNLWSESSLEPSEITNDGAIFPNATTVGESMPLPVPNSDHGIVLNIEL

Homology

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BLAST of Spg038550 vs. NCBI nr
Match: XP_022949237.1 (uncharacterized protein LOC111452650 [Cucurbita moschata])

HSP 1 Score: 276.6 bits (706), Expect = 3.2e-70
Identity = 154/229 (67.25%), Postives = 177/229 (77.29%), Query Frame = 0


Query: 1   MAESSDKILPSKNRLHFLLRCFGSSPKVHSQKAPATGRRNRRVPSLRFRFNKSSATVPVD 60
           MAE+S+K+ PSK  LHFLLRCFGSSPKV ++K P TGRR+ R+PS RFRF KSSATVP+D
Sbjct: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPID 60

Query: 61  AAVPEIAVLCDDDASFSPDFKKPPPPPPVTSRAPAVRAEIVESIKPSQTRKKTESTQSES 120
            AVPEI V CDD ASFSP+FKKPPP P + SRAP VR +IVE IKPSQ  KKTEST+S+ 
Sbjct: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQPWKKTESTRSDF 120

Query: 121 KAERIPPAKRTAALLHSVSLPSPRLSGQKDLKKTVSHLPC--AAAPPSSDRLKPAPKPST 180
               + PAKRTAALLHS+SLPS RL+ QKD KKTVSHL       P SS+R KPA KP  
Sbjct: 121 ----LTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPM 180

Query: 181 NSPATKFDPVIVIVALAMVVLWGRLCAILCTSALFYFGRRRRFKFPEEG 228
           NSPA   D +IVIVA+A+VVLWG+LCAILCT+ALFYF RR R +   EG
Sbjct: 181 NSPAKILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETELEG 225

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BLAST of Spg038550 vs. NCBI nr
Match: KAG6606901.1 (60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 275.4 bits (703), Expect = 7.1e-70
Identity = 154/229 (67.25%), Postives = 177/229 (77.29%), Query Frame = 0


Query: 1   MAESSDKILPSKNRLHFLLRCFGSSPKVHSQKAPATGRRNRRVPSLRFRFNKSSATVPVD 60
           MAE+S+K+ PSK  LHFLLRCFGSSPKV ++K P TGR + R+PS RFRF KSSATVP+D
Sbjct: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRWDSRIPSPRFRFKKSSATVPID 60

Query: 61  AAVPEIAVLCDDDASFSPDFKKPPPPPPVTSRAPAVRAEIVESIKPSQTRKKTESTQSES 120
            AVPEI V CDD ASFSP+FKKPPP P + SRAP VR +IVE IKPSQT KKTEST+ +S
Sbjct: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQTWKKTESTRYDS 120

Query: 121 KAERIPPAKRTAALLHSVSLPSPRLSGQKDLKKTVSHLPC--AAAPPSSDRLKPAPKPST 180
               + PAKRTAALLHS+SLPS RL+ QKDLKKTVSHL       P SS+R KPA K   
Sbjct: 121 ----LTPAKRTAALLHSISLPSRRLNRQKDLKKTVSHLSAVKTPTPTSSERRKPADKAPM 180

Query: 181 NSPATKFDPVIVIVALAMVVLWGRLCAILCTSALFYFGRRRRFKFPEEG 228
           NSPA   D +IVIVA+A+VVLWG+LCAILCT+ALFYF RR R +   EG
Sbjct: 181 NSPAKILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETESEG 225

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BLAST of Spg038550 vs. NCBI nr
Match: KAA0052773.1 (60S ribosomal protein L44 [Cucumis melo var. makuwa] >TYK04183.1 60S ribosomal protein L44 [Cucumis melo var. makuwa])

HSP 1 Score: 205.3 bits (521), Expect = 9.0e-49
Identity = 127/229 (55.46%), Postives = 152/229 (66.38%), Query Frame = 0


Query: 1   MAESSDKILPSKNRLHFLLRCFGSSPKVHSQKAPATGRRNRRVPSLRFRFNKSSATVPVD 60
           MA+SS K  PSK+   FL  CF SS K+ ++K  +   RNRR  SL FRF KSSATVPVD
Sbjct: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60

Query: 61  AAVPEIAVLCDDDASFSPDFKKPPPPPPVTSRAPAVRAEIV-----ESIKPSQTRKKTES 120
            A P       D+ SFSPDFKKPPP   +T +AP V  EIV     ES+KPSQTRKK ES
Sbjct: 61  VAYPS-----HDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPES 120

Query: 121 TQSESKAERIPPAKRTAALLHSVSLPSPRLSGQKDLKKTVS-HLPCAAA---PPSSDRLK 180
           TQS    +++ P ++ AA LHSVS PS  L+ QKD K++VS HLP A A   P  SD  K
Sbjct: 121 TQSNFTTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNK 180

Query: 181 PAPKPSTNSPATKFDPVIVIVALAMVVLWGRLCAILCTSALFYFGRRRR 221
           P PK +TN P    D VI++V +A++VLWGRLCAILCT+ALFY GRR R
Sbjct: 181 PTPKLATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMR 224

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BLAST of Spg038550 vs. NCBI nr
Match: KGN58547.1 (hypothetical protein Csa_002056 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 3.4e-48
Identity = 129/243 (53.09%), Postives = 157/243 (64.61%), Query Frame = 0


Query: 1   MAESSDKILPSKNRLHFLLRCFGSSPKVHSQKAPATGRRNRRVPSLRFRFNKSSATVPVD 60
           MA+SS+ I PSK+ LHFL  CF SS K+ ++KA +   R RR  S  FRF KSSATVPVD
Sbjct: 1   MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60

Query: 61  AAVPEIAVLCDDDASFSPDFKKPPPPPPVTSRAPAVRAEIV--ESIKPSQTRKKTESTQS 120
            A P       D+ SF P+FKK PP   +  +AP V  EIV   S+KPSQTRKK  STQS
Sbjct: 61  VADPS-----HDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDSSLKPSQTRKKPHSTQS 120

Query: 121 ESKAERIPPAKRTAALLHSVSLPSPRLSGQKDLKKTVS-HLPCAAA---PPSSDRLKPAP 180
               +++ P ++TAALLHSVSLPS +L+ QK  KK VS HLP A A   P  SD  KP P
Sbjct: 121 NFTTKKLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTP 180

Query: 181 KPSTNSPATKFDPVIVIVALAMVVLWGRLCAILCTSALFYFGRRRRFKFPEEGFYIDPDN 238
           K  T  P   FD VI++V +A+V+LWGRLCAILCT+ALFY GRR R +       I+PD 
Sbjct: 181 KLPTYYPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSE-------IEPDG 231

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BLAST of Spg038550 vs. NCBI nr
Match: XP_022934627.1 (uncharacterized protein LOC111441760 [Cucurbita moschata] >XP_022934628.1 uncharacterized protein LOC111441760 [Cucurbita moschata] >XP_022934629.1 uncharacterized protein LOC111441760 [Cucurbita moschata])

HSP 1 Score: 193.4 bits (490), Expect = 3.5e-45
Identity = 128/232 (55.17%), Postives = 147/232 (63.36%), Query Frame = 0


Query: 1   MAESSDKILPSKNRLHFLLRCFGSSPKVHSQKAPATGRRNRRVPSLRFRFNKSSATVPVD 60
           MAESSD     K RLHFL RCF SSP V  QKA      NRR PSLRFRF KSSATVP+D
Sbjct: 1   MAESSD-----KPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLD 60

Query: 61  AAVPEIAVLCDDDASFSPDFKKPPPPPPVTSRAPAVRAEIV-----ESIKPSQTRKKTES 120
           AAVP     C D+ S SP+F  PPPP       P ++ EI+     ++IKPS+TRKK+ES
Sbjct: 61  AAVP-----CHDELSLSPEFNTPPPP-------PLIKGEIIVDSGCKTIKPSKTRKKSES 120

Query: 121 TQSESKAERIPPAKRTAALLHSVSLPSPRLSGQKDLKKTVSHLPCAAAP-----PSSDRL 180
           TQS  K+E       T +   +    SP L  +K LKK++SHLP AAA      PSSDR 
Sbjct: 121 TQSNPKSE------STQSNSTAEKKTSPSLHSEKGLKKSISHLPTAAAALTTSLPSSDRW 180

Query: 181 KPAPKPSTNSPATKFDPVIVIVALAMVVLWGRLCAILCTSALFYFGRRRRFK 223
               KP TNSP  KFD VIVIVA+A+VVLWGRLCAILCT+ALFY  R  R K
Sbjct: 181 ----KPPTNSPNKKFDLVIVIVAVAIVVLWGRLCAILCTAALFYLRRCLRSK 205

[Close]

BLAST of Spg038550 vs. ExPASy TrEMBL
Match: A0A6J1GBH7 (uncharacterized protein LOC111452650 OS=Cucurbita moschata OX=3662 GN=LOC111452650 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 1.5e-70
Identity = 154/229 (67.25%), Postives = 177/229 (77.29%), Query Frame = 0


Query: 1   MAESSDKILPSKNRLHFLLRCFGSSPKVHSQKAPATGRRNRRVPSLRFRFNKSSATVPVD 60
           MAE+S+K+ PSK  LHFLLRCFGSSPKV ++K P TGRR+ R+PS RFRF KSSATVP+D
Sbjct: 1   MAEASEKMSPSKRPLHFLLRCFGSSPKVQTKKNPTTGRRDSRIPSPRFRFKKSSATVPID 60

Query: 61  AAVPEIAVLCDDDASFSPDFKKPPPPPPVTSRAPAVRAEIVESIKPSQTRKKTESTQSES 120
            AVPEI V CDD ASFSP+FKKPPP P + SRAP VR +IVE IKPSQ  KKTEST+S+ 
Sbjct: 61  VAVPEITVPCDDKASFSPEFKKPPPSPLIKSRAPTVRTKIVELIKPSQPWKKTESTRSDF 120

Query: 121 KAERIPPAKRTAALLHSVSLPSPRLSGQKDLKKTVSHLPC--AAAPPSSDRLKPAPKPST 180
               + PAKRTAALLHS+SLPS RL+ QKD KKTVSHL       P SS+R KPA KP  
Sbjct: 121 ----LTPAKRTAALLHSISLPSRRLNRQKDFKKTVSHLSAVKTPTPTSSERRKPADKPPM 180

Query: 181 NSPATKFDPVIVIVALAMVVLWGRLCAILCTSALFYFGRRRRFKFPEEG 228
           NSPA   D +IVIVA+A+VVLWG+LCAILCT+ALFYF RR R +   EG
Sbjct: 181 NSPAKILDLIIVIVAVAIVVLWGQLCAILCTTALFYFCRRLRSETELEG 225

[Close]

BLAST of Spg038550 vs. ExPASy TrEMBL
Match: A0A5A7UA28 (60S ribosomal protein L44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00090 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.3e-49
Identity = 127/229 (55.46%), Postives = 152/229 (66.38%), Query Frame = 0


Query: 1   MAESSDKILPSKNRLHFLLRCFGSSPKVHSQKAPATGRRNRRVPSLRFRFNKSSATVPVD 60
           MA+SS K  PSK+   FL  CF SS K+ ++K  +   RNRR  SL FRF KSSATVPVD
Sbjct: 1   MADSSQKNPPSKSPFRFLFTCFRSSSKLPAKKPSSIAPRNRRTFSLTFRFKKSSATVPVD 60

Query: 61  AAVPEIAVLCDDDASFSPDFKKPPPPPPVTSRAPAVRAEIV-----ESIKPSQTRKKTES 120
            A P       D+ SFSPDFKKPPP   +T +AP V  EIV     ES+KPSQTRKK ES
Sbjct: 61  VAYPS-----HDELSFSPDFKKPPPLSLITPKAPQVVGEIVVDSGYESLKPSQTRKKPES 120

Query: 121 TQSESKAERIPPAKRTAALLHSVSLPSPRLSGQKDLKKTVS-HLPCAAA---PPSSDRLK 180
           TQS    +++ P ++ AA LHSVS PS  L+ QKD K++VS HLP A A   P  SD  K
Sbjct: 121 TQSNFTTKKLSPTRKIAASLHSVSPPSQLLTRQKDFKRSVSEHLPAAVATTSPAFSDGNK 180

Query: 181 PAPKPSTNSPATKFDPVIVIVALAMVVLWGRLCAILCTSALFYFGRRRR 221
           P PK +TN P    D VI++V +A++VLWGRLCAILCT+ALFY GRR R
Sbjct: 181 PTPKLATNYPVKNLDRVIMVVMVAIMVLWGRLCAILCTTALFYLGRRMR 224

[Close]

BLAST of Spg038550 vs. ExPASy TrEMBL
Match: A0A0A0LCZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680630 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.7e-48
Identity = 129/243 (53.09%), Postives = 157/243 (64.61%), Query Frame = 0


Query: 1   MAESSDKILPSKNRLHFLLRCFGSSPKVHSQKAPATGRRNRRVPSLRFRFNKSSATVPVD 60
           MA+SS+ I PSK+ LHFL  CF SS K+ ++KA +   R RR  S  FRF KSSATVPVD
Sbjct: 1   MADSSENIPPSKSPLHFLFSCFRSSSKLPTKKASSIAPRIRRTSSRTFRFKKSSATVPVD 60

Query: 61  AAVPEIAVLCDDDASFSPDFKKPPPPPPVTSRAPAVRAEIV--ESIKPSQTRKKTESTQS 120
            A P       D+ SF P+FKK PP   +  +AP V  EIV   S+KPSQTRKK  STQS
Sbjct: 61  VADPS-----HDELSFLPEFKKSPPLSFIMPKAPQVGGEIVVDSSLKPSQTRKKPHSTQS 120

Query: 121 ESKAERIPPAKRTAALLHSVSLPSPRLSGQKDLKKTVS-HLPCAAA---PPSSDRLKPAP 180
               +++ P ++TAALLHSVSLPS +L+ QK  KK VS HLP A A   P  SD  KP P
Sbjct: 121 NFTTKKLSPTRKTAALLHSVSLPSQQLTRQKYFKKPVSGHLPAAVATTSPAFSDGNKPTP 180

Query: 181 KPSTNSPATKFDPVIVIVALAMVVLWGRLCAILCTSALFYFGRRRRFKFPEEGFYIDPDN 238
           K  T  P   FD VI++V +A+V+LWGRLCAILCT+ALFY GRR R +       I+PD 
Sbjct: 181 KLPTYYPVKNFDRVIMVVIVAIVMLWGRLCAILCTTALFYLGRRMRSE-------IEPDG 231

[Close]

BLAST of Spg038550 vs. ExPASy TrEMBL
Match: A0A6J1F3C2 (uncharacterized protein LOC111441760 OS=Cucurbita moschata OX=3662 GN=LOC111441760 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.7e-45
Identity = 128/232 (55.17%), Postives = 147/232 (63.36%), Query Frame = 0


Query: 1   MAESSDKILPSKNRLHFLLRCFGSSPKVHSQKAPATGRRNRRVPSLRFRFNKSSATVPVD 60
           MAESSD     K RLHFL RCF SSP V  QKA      NRR PSLRFRF KSSATVP+D
Sbjct: 1   MAESSD-----KPRLHFLFRCFRSSPNVQRQKAHPIASPNRRTPSLRFRFKKSSATVPLD 60

Query: 61  AAVPEIAVLCDDDASFSPDFKKPPPPPPVTSRAPAVRAEIV-----ESIKPSQTRKKTES 120
           AAVP     C D+ S SP+F  PPPP       P ++ EI+     ++IKPS+TRKK+ES
Sbjct: 61  AAVP-----CHDELSLSPEFNTPPPP-------PLIKGEIIVDSGCKTIKPSKTRKKSES 120

Query: 121 TQSESKAERIPPAKRTAALLHSVSLPSPRLSGQKDLKKTVSHLPCAAAP-----PSSDRL 180
           TQS  K+E       T +   +    SP L  +K LKK++SHLP AAA      PSSDR 
Sbjct: 121 TQSNPKSE------STQSNSTAEKKTSPSLHSEKGLKKSISHLPTAAAALTTSLPSSDRW 180

Query: 181 KPAPKPSTNSPATKFDPVIVIVALAMVVLWGRLCAILCTSALFYFGRRRRFK 223
               KP TNSP  KFD VIVIVA+A+VVLWGRLCAILCT+ALFY  R  R K
Sbjct: 181 ----KPPTNSPNKKFDLVIVIVAVAIVVLWGRLCAILCTAALFYLRRCLRSK 205

[Close]

BLAST of Spg038550 vs. ExPASy TrEMBL
Match: A0A6J1IZW6 (uncharacterized protein LOC111481455 OS=Cucurbita maxima OX=3661 GN=LOC111481455 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.8e-45
Identity = 122/225 (54.22%), Postives = 144/225 (64.00%), Query Frame = 0


Query: 1   MAESSDKILPSKNRLHFLLRCFGSSPKVHSQKAPATGRRNRRVPSLRFRFNKSSATVPVD 60
           MAESSD     K RLHFL RCF SSP V  QKA      NRR PSLRFRF K SATVP+D
Sbjct: 1   MAESSD-----KPRLHFLFRCFRSSPNVQRQKAQQIASPNRRTPSLRFRFKKCSATVPLD 60

Query: 61  AAVPEIAVLCDDDASFSPDFKKPPPPPPVTSRAPAVRAEIVESIKPSQTRKKTESTQSES 120
           AAVP     C D+ SFSP+F  PPPP P+  +   +     ++IK S+TRKK+ESTQS  
Sbjct: 61  AAVP-----CHDELSFSPEFNTPPPPSPI--KGEIIVDSGCKTIKQSKTRKKSESTQSNP 120

Query: 121 KAERIPPAKRTAALLHSVSLPSPRLSGQKDLKKTVSHLPCAAA---PPSSDRLKPAPKPS 180
             E++PPAK+T+  LHS          +K LKK++SHLP A A   P +S     + K  
Sbjct: 121 TVEKLPPAKKTSPSLHS----------EKGLKKSISHLPIAVADADPTTSLASSDSWKAP 180

Query: 181 TNSPATKFDPVIVIVALAMVVLWGRLCAILCTSALFYFGRRRRFK 223
           TNSP  KFD V VIVA+A+VVLWGRLCAILCT+ALFY  R  R K
Sbjct: 181 TNSPTIKFDLVTVIVAVAIVVLWGRLCAILCTAALFYLRRCLRSK 203

The following BLAST results are available for this feature:

BLAST of Spg038550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949237.1	3.2e-70	67.25	uncharacterized protein LOC111452650 [Cucurbita moschata]	[more]
KAG6606901.1	7.1e-70	67.25	60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAA0052773.1	9.0e-49	55.46	60S ribosomal protein L44 [Cucumis melo var. makuwa] >TYK04183.1 60S ribosomal p...	[more]
KGN58547.1	3.4e-48	53.09	hypothetical protein Csa_002056 [Cucumis sativus]	[more]
XP_022934627.1	3.5e-45	55.17	uncharacterized protein LOC111441760 [Cucurbita moschata] >XP_022934628.1 unchar...	[more]

BLAST of Spg038550 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg038550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GBH7	1.5e-70	67.25	uncharacterized protein LOC111452650 OS=Cucurbita moschata OX=3662 GN=LOC1114526...	[more]
A0A5A7UA28	4.3e-49	55.46	60S ribosomal protein L44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LCZ2	1.7e-48	53.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680630 PE=4 SV=1	[more]
A0A6J1F3C2	1.7e-45	55.17	uncharacterized protein LOC111441760 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]
A0A6J1IZW6	3.8e-45	54.22	uncharacterized protein LOC111481455 OS=Cucurbita maxima OX=3661 GN=LOC111481455...	[more]

BLAST of Spg038550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..126
None	No IPR available	PANTHER	PTHR34379:SF3	PROTEIN, PUTATIVE-RELATED	coord: 1..219
IPR040411	Uncharacterized protein At5g23160-like	PANTHER	PTHR34379	OS07G0553800 PROTEIN	coord: 1..219

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg038550.1	Spg038550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane