Spg038318 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg038318
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CST complex subunit STN1
Location	scaffold12: 43087169 .. 43087678 (+)
RNA-Seq Expression	Spg038318
Synteny	Spg038318

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAAGATCAACGGCAGCTCCTCTGCCACACCCACGTCAAGCTCCTGGGTTTCGACCTTAATGCACTAACCCAAAGTTTCTCTTCTTCTTCTTCCGCTGCAGTTTCTTTCTCTCGCAGAGGCTATGCCGTTTCGTTTGCAGAGATCGTCGGCGTTGTGGTCTTGCGTGACCTGAAGCCTAACAGGTTTCTCAAATTTTCCGTCGACGATGGCACCGCCTGTGTTGCCTGTATCCTGTGGCTCAACCATCTCACATCGCCTTACTTTGCTTCGCGCCACCAGCCAGATGTTCGAATAATTGGAAATATGGCCACCCATTTCGCAGCCCAAGTTAGGGTTGGGATTGTTGCTAGGGTTCGGGGGAAAGTGAGCAGCTATAGAGGAGTGGTGCAGATCACGGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTGCATGAGGTTGGCTCTTAAGTGTTATGACCTCTTCCCTACACCCACATAG

mRNA sequence

ATGGATCAAGATCAACGGCAGCTCCTCTGCCACACCCACGTCAAGCTCCTGGGTTTCGACCTTAATGCACTAACCCAAAGTTTCTCTTCTTCTTCTTCCGCTGCAGTTTCTTTCTCTCGCAGAGGCTATGCCGTTTCGTTTGCAGAGATCGTCGGCGTTGTGGTCTTGCGTGACCTGAAGCCTAACAGGTTTCTCAAATTTTCCGTCGACGATGGCACCGCCTGTGTTGCCTGTATCCTGTGGCTCAACCATCTCACATCGCCTTACTTTGCTTCGCGCCACCAGCCAGATGTTCGAATAATTGGAAATATGGCCACCCATTTCGCAGCCCAAGTTAGGGTTGGGATTGTTGCTAGGGTTCGGGGGAAAGTGAGCAGCTATAGAGGAGTGGTGCAGATCACGGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTGCATGAGGTTGGCTCTTAAGTGTTATGACCTCTTCCCTACACCCACATAG

Coding sequence (CDS)

ATGGATCAAGATCAACGGCAGCTCCTCTGCCACACCCACGTCAAGCTCCTGGGTTTCGACCTTAATGCACTAACCCAAAGTTTCTCTTCTTCTTCTTCCGCTGCAGTTTCTTTCTCTCGCAGAGGCTATGCCGTTTCGTTTGCAGAGATCGTCGGCGTTGTGGTCTTGCGTGACCTGAAGCCTAACAGGTTTCTCAAATTTTCCGTCGACGATGGCACCGCCTGTGTTGCCTGTATCCTGTGGCTCAACCATCTCACATCGCCTTACTTTGCTTCGCGCCACCAGCCAGATGTTCGAATAATTGGAAATATGGCCACCCATTTCGCAGCCCAAGTTAGGGTTGGGATTGTTGCTAGGGTTCGGGGGAAAGTGAGCAGCTATAGAGGAGTGGTGCAGATCACGGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTGCATGAGGTTGGCTCTTAAGTGTTATGACCTCTTCCCTACACCCACATAG

Protein sequence

MDQDQRQLLCHTHVKLLGFDLNALTQSFSSSSSAAVSFSRRGYAVSFAEIVGVVVLRDLKPNRFLKFSVDDGTACVACILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQVRVGIVARVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDCMRLALKCYDLFPTPT

Homology

[Close]

BLAST of Spg038318 vs. NCBI nr
Match: XP_023553655.1 (CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553657.1 CST complex subunit STN1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.4 bits (755), Expect = 3.1e-76
Identity = 145/168 (86.31%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MDQDQRQLLCHTHVKLLGFDLNALTQSFSSSSSAAVSFSRRGYAVSFAEIVGVVVLRDLK 60
           M+Q +   L HTH+KLLGFDLN+L QS SSSSS AVSFSRRGYAVS  E+VGVVV RDLK
Sbjct: 1   MNQQRAFSLYHTHIKLLGFDLNSLAQSSSSSSSDAVSFSRRGYAVSCVEVVGVVVFRDLK 60

Query: 61  PNRFLKFSVDDGTACVACILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQVRVGIVARV 120
           PNRFL+FSVDDGT CV+CILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQ+RVGIVARV
Sbjct: 61  PNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARV 120

Query: 121 RGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDCMRLALKCYDLFPTP 169
           RGKVSSYRGVVQITVSDVVVE+DPNAEILHWLDCMRLALKCYDL P P
Sbjct: 121 RGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 168

[Close]

BLAST of Spg038318 vs. NCBI nr
Match: XP_022963452.1 (LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata])

HSP 1 Score: 295.4 bits (755), Expect = 3.1e-76
Identity = 145/168 (86.31%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 1   MDQDQRQLLCHTHVKLLGFDLNALTQSFSSSSSAAVSFSRRGYAVSFAEIVGVVVLRDLK 60
           M+Q +   L HTH+KLLGFDLN+LTQS SSSSS AVSFSRRGYAVS  EIVGVVV RDLK
Sbjct: 41  MNQQRAFSLYHTHIKLLGFDLNSLTQSASSSSSDAVSFSRRGYAVSCVEIVGVVVFRDLK 100

Query: 61  PNRFLKFSVDDGTACVACILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQVRVGIVARV 120
           PNRFL+FSVDDGT CV+CILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQ+RVGIVARV
Sbjct: 101 PNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARV 160

Query: 121 RGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDCMRLALKCYDLFPTP 169
           RG+VSSYRGVVQ+TVSDVVVE+DPNAEILHWLDCMRLALKCYDL P P
Sbjct: 161 RGRVSSYRGVVQMTVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 208

[Close]

BLAST of Spg038318 vs. NCBI nr
Match: KAG6571457.1 (CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.0 bits (746), Expect = 3.4e-75
Identity = 146/169 (86.39%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 1   MDQDQRQLLCHTHVKLLGFDLNALTQSFSSSSSA-AVSFSRRGYAVSFAEIVGVVVLRDL 60
           M+Q +   L HTH+KLLGFDLN+LTQS SSSSS+ AVSFSRRGYAVS  EIVGVVV RDL
Sbjct: 20  MNQQRAFSLYHTHIKLLGFDLNSLTQSSSSSSSSDAVSFSRRGYAVSCVEIVGVVVFRDL 79

Query: 61  KPNRFLKFSVDDGTACVACILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQVRVGIVAR 120
           KPNRFL+FSVDDGT CV+CILWLNHLTSPYFA RHQPDVRIIGNMATHFAAQ+RVGIVAR
Sbjct: 80  KPNRFLRFSVDDGTGCVSCILWLNHLTSPYFALRHQPDVRIIGNMATHFAAQIRVGIVAR 139

Query: 121 VRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDCMRLALKCYDLFPTP 169
           VRGKVSSYRGVVQITVSDVVVE+DPNAEILHWLDCMRLALKCYDL P P
Sbjct: 140 VRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 188

[Close]

BLAST of Spg038318 vs. NCBI nr
Match: KAG7011223.1 (CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.0 bits (746), Expect = 3.4e-75
Identity = 146/169 (86.39%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 1   MDQDQRQLLCHTHVKLLGFDLNALTQSFSSSSSA-AVSFSRRGYAVSFAEIVGVVVLRDL 60
           M+Q +   L HTH+KLLGFDLN+LTQS SSSSS+ AVSFSRRGYAVS  EIVGVVV RDL
Sbjct: 1   MNQQRAFSLYHTHIKLLGFDLNSLTQSSSSSSSSDAVSFSRRGYAVSCVEIVGVVVFRDL 60

Query: 61  KPNRFLKFSVDDGTACVACILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQVRVGIVAR 120
           KPNRFL+FSVDDGT CV+CILWLNHLTSPYFA RHQPDVRIIGNMATHFAAQ+RVGIVAR
Sbjct: 61  KPNRFLRFSVDDGTGCVSCILWLNHLTSPYFALRHQPDVRIIGNMATHFAAQIRVGIVAR 120

Query: 121 VRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDCMRLALKCYDLFPTP 169
           VRGKVSSYRGVVQITVSDVVVE+DPNAEILHWLDCMRLALKCYDL P P
Sbjct: 121 VRGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 169

[Close]

BLAST of Spg038318 vs. NCBI nr
Match: XP_022967373.1 (CST complex subunit STN1 [Cucurbita maxima] >XP_022967374.1 CST complex subunit STN1 [Cucurbita maxima] >XP_022967375.1 CST complex subunit STN1 [Cucurbita maxima])

HSP 1 Score: 273.1 bits (697), Expect = 1.6e-69
Identity = 136/155 (87.74%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MDQDQRQLLCHTHVKLLGFDLNALTQSFSSSSSAAVSFSRRGYAVSFAEIVGVVVLRDLK 60
           M+Q +   L HTH+KLLGFDLN+LTQS SSSSS AVSFSRRG+AVS AEIVGVVV RDLK
Sbjct: 19  MNQQRAFSLYHTHIKLLGFDLNSLTQSSSSSSSDAVSFSRRGFAVSCAEIVGVVVSRDLK 78

Query: 61  PNRFLKFSVDDGTACVACILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQVRVGIVARV 120
           PNRFL+FSVDDGT CV+CILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQ+RVGIVARV
Sbjct: 79  PNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARV 138

Query: 121 RGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDCM 156
           RGKVSSYRGVVQITVSDVVVE+DPNAEILHWLDCM
Sbjct: 139 RGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCM 173

[Close]

BLAST of Spg038318 vs. ExPASy Swiss-Prot
Match: Q9LMK5 (CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.7e-37
Identity = 80/151 (52.98%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 12  THVKLLGFDLNALTQSFSSSSSAAVSFSRRGYAVSFAEIVGVVVLRDLKPNRFLKFSVDD 71
           TH KL+  D+  LTQS + S+S ++     G  VS  EIVG +V RDL P +FLKF VDD
Sbjct: 8   THAKLVARDIQRLTQSPTESNSFSL---LGGACVSRVEIVGTIVSRDLTP-KFLKFGVDD 67

Query: 72  GTACVACILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQVRVGIVARVRGKVSSYRGVV 131
           GT CV C++WLN LTS YF+      + ++ + A   AAQ+R+G VARVRG+V SYRGV+
Sbjct: 68  GTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRGVM 127

Query: 132 QITVSDVVVEDDPNAEILHWLDCMRLALKCY 163
           QIT +  V E DPNAEILHWL+C++L   CY
Sbjct: 128 QITANVAVAERDPNAEILHWLECLKLGQSCY 154

[Close]

BLAST of Spg038318 vs. ExPASy TrEMBL
Match: A0A6J1HFA9 (LOW QUALITY PROTEIN: CST complex subunit STN1 OS=Cucurbita moschata OX=3662 GN=LOC111463780 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.5e-76
Identity = 145/168 (86.31%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 1   MDQDQRQLLCHTHVKLLGFDLNALTQSFSSSSSAAVSFSRRGYAVSFAEIVGVVVLRDLK 60
           M+Q +   L HTH+KLLGFDLN+LTQS SSSSS AVSFSRRGYAVS  EIVGVVV RDLK
Sbjct: 41  MNQQRAFSLYHTHIKLLGFDLNSLTQSASSSSSDAVSFSRRGYAVSCVEIVGVVVFRDLK 100

Query: 61  PNRFLKFSVDDGTACVACILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQVRVGIVARV 120
           PNRFL+FSVDDGT CV+CILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQ+RVGIVARV
Sbjct: 101 PNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARV 160

Query: 121 RGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDCMRLALKCYDLFPTP 169
           RG+VSSYRGVVQ+TVSDVVVE+DPNAEILHWLDCMRLALKCYDL P P
Sbjct: 161 RGRVSSYRGVVQMTVSDVVVENDPNAEILHWLDCMRLALKCYDLSPAP 208

[Close]

BLAST of Spg038318 vs. ExPASy TrEMBL
Match: A0A6J1HUX0 (CST complex subunit STN1 OS=Cucurbita maxima OX=3661 GN=LOC111466921 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.9e-70
Identity = 136/155 (87.74%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MDQDQRQLLCHTHVKLLGFDLNALTQSFSSSSSAAVSFSRRGYAVSFAEIVGVVVLRDLK 60
           M+Q +   L HTH+KLLGFDLN+LTQS SSSSS AVSFSRRG+AVS AEIVGVVV RDLK
Sbjct: 19  MNQQRAFSLYHTHIKLLGFDLNSLTQSSSSSSSDAVSFSRRGFAVSCAEIVGVVVSRDLK 78

Query: 61  PNRFLKFSVDDGTACVACILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQVRVGIVARV 120
           PNRFL+FSVDDGT CV+CILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQ+RVGIVARV
Sbjct: 79  PNRFLRFSVDDGTGCVSCILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQIRVGIVARV 138

Query: 121 RGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDCM 156
           RGKVSSYRGVVQITVSDVVVE+DPNAEILHWLDCM
Sbjct: 139 RGKVSSYRGVVQITVSDVVVENDPNAEILHWLDCM 173

[Close]

BLAST of Spg038318 vs. ExPASy TrEMBL
Match: A0A5D3E3H2 (CST complex subunit STN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001150 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.5e-68
Identity = 137/171 (80.12%), Postives = 148/171 (86.55%), Query Frame = 0


Query: 1   MDQDQR--QLLCHTHVKLLGFDLNALTQSFSSSSSAAVSFSRRGYAVSFAEIVGVVVLRD 60
           M+Q QR    L  THVKLLGFDLN+L Q   +SSS +VSFSR+GYAVS  EIVGVVV RD
Sbjct: 1   MNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRD 60

Query: 61  LKPNRFLKFSVDDGTACVACILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQVRVGIVA 120
           LKPNRFLKFSVDDGTACV CILWLNHLTS YFASRH PDVRI+ +MATHFAAQ+RVGIV 
Sbjct: 61  LKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVV 120

Query: 121 RVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDCMRLALKCYDLFPTPT 170
           RVRGK+SSYRG+VQITVSDVVVEDDPNAEILHWLD MRLA+KCYDL P PT
Sbjct: 121 RVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 168

[Close]

BLAST of Spg038318 vs. ExPASy TrEMBL
Match: A0A1S3BLT5 (CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.5e-68
Identity = 137/171 (80.12%), Postives = 148/171 (86.55%), Query Frame = 0


Query: 1   MDQDQR--QLLCHTHVKLLGFDLNALTQSFSSSSSAAVSFSRRGYAVSFAEIVGVVVLRD 60
           M+Q QR    L  THVKLLGFDLN+L Q   +SSS +VSFSR+GYAVS  EIVGVVV RD
Sbjct: 51  MNQRQRFSFSLYQTHVKLLGFDLNSLNQ---NSSSDSVSFSRKGYAVSCTEIVGVVVFRD 110

Query: 61  LKPNRFLKFSVDDGTACVACILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQVRVGIVA 120
           LKPNRFLKFSVDDGTACV CILWLNHLTS YFASRH PDVRI+ +MATHFAAQ+RVGIV 
Sbjct: 111 LKPNRFLKFSVDDGTACVGCILWLNHLTSSYFASRHHPDVRILADMATHFAAQIRVGIVV 170

Query: 121 RVRGKVSSYRGVVQITVSDVVVEDDPNAEILHWLDCMRLALKCYDLFPTPT 170
           RVRGK+SSYRG+VQITVSDVVVEDDPNAEILHWLD MRLA+KCYDL P PT
Sbjct: 171 RVRGKLSSYRGMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPIPT 218

[Close]

BLAST of Spg038318 vs. ExPASy TrEMBL
Match: A0A0A0LNV0 (OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.3e-68
Identity = 133/161 (82.61%), Postives = 143/161 (88.82%), Query Frame = 0


Query: 9   LCHTHVKLLGFDLNALTQSFSSSSSAAVSFSRRGYAVSFAEIVGVVVLRDLKPNRFLKFS 68
           L  THVKLL FDLN+L Q   +SSS +VSFSR+GYAVS  EIVGVVV RDLKPNRFLKFS
Sbjct: 11  LYQTHVKLLAFDLNSLNQ---TSSSDSVSFSRKGYAVSCTEIVGVVVFRDLKPNRFLKFS 70

Query: 69  VDDGTACVACILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQVRVGIVARVRGKVSSYR 128
           VDDGTACV CILWLNHLTS YFASRH  DVRI+G+MATHFAAQ+RVGIV RVRGK+SSYR
Sbjct: 71  VDDGTACVGCILWLNHLTSSYFASRHHQDVRILGDMATHFAAQIRVGIVVRVRGKLSSYR 130

Query: 129 GVVQITVSDVVVEDDPNAEILHWLDCMRLALKCYDLFPTPT 170
           G+VQITVSDVVVEDDPNAEILHWLD MRLA+KCYDL PTPT
Sbjct: 131 GMVQITVSDVVVEDDPNAEILHWLDSMRLAMKCYDLSPTPT 168

[Close]

BLAST of Spg038318 vs. TAIR 10
Match: AT1G07130.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-38
Identity = 80/151 (52.98%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 12  THVKLLGFDLNALTQSFSSSSSAAVSFSRRGYAVSFAEIVGVVVLRDLKPNRFLKFSVDD 71
           TH KL+  D+  LTQS + S+S ++     G  VS  EIVG +V RDL P +FLKF VDD
Sbjct: 8   THAKLVARDIQRLTQSPTESNSFSL---LGGACVSRVEIVGTIVSRDLTP-KFLKFGVDD 67

Query: 72  GTACVACILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQVRVGIVARVRGKVSSYRGVV 131
           GT CV C++WLN LTS YF+      + ++ + A   AAQ+R+G VARVRG+V SYRGV+
Sbjct: 68  GTGCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRGVM 127

Query: 132 QITVSDVVVEDDPNAEILHWLDCMRLALKCY 163
           QIT +  V E DPNAEILHWL+C++L   CY
Sbjct: 128 QITANVAVAERDPNAEILHWLECLKLGQSCY 154

[Close]

BLAST of Spg038318 vs. TAIR 10
Match: AT2G24490.1 (replicon protein A2 )

HSP 1 Score: 41.2 bits (95), Expect = 9.7e-04
Identity = 33/140 (23.57%), Postives = 61/140 (43.57%), Query Frame = 0


Query: 16  LLGFDLNALTQSFSSSSSAAVSFSRRGYAVSFAEIVGVVVLRDLKPNRFLKFSVDDGTAC 75
           L+   +  +T+ F SS   +      G +++   +VG+V  +D      ++F++DDGT  
Sbjct: 42  LVPVTVKQITECFQSSGEKS-GLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGR 101

Query: 76  VACILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQVRVGIVARVRGKVSSYRGVVQITV 135
           + C  W+    S  F +R                  VR G   R+ G + +++G  Q+ V
Sbjct: 102 IDCKRWV----SETFDAREM--------------ESVRDGTYVRLSGHLKTFQGKTQLLV 161

Query: 136 SDVVVEDDPNAEILHWLDCM 156
             V    D N    H+++C+
Sbjct: 162 FSVRPIMDFNEVTFHYIECI 162

[Close]

BLAST of Spg038318 vs. TAIR 10
Match: AT2G24490.2 (replicon protein A2 )

HSP 1 Score: 41.2 bits (95), Expect = 9.7e-04
Identity = 33/140 (23.57%), Postives = 61/140 (43.57%), Query Frame = 0


Query: 16  LLGFDLNALTQSFSSSSSAAVSFSRRGYAVSFAEIVGVVVLRDLKPNRFLKFSVDDGTAC 75
           L+   +  +T+ F SS   +      G +++   +VG+V  +D      ++F++DDGT  
Sbjct: 42  LVPVTVKQITECFQSSGEKS-GLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGR 101

Query: 76  VACILWLNHLTSPYFASRHQPDVRIIGNMATHFAAQVRVGIVARVRGKVSSYRGVVQITV 135
           + C  W+    S  F +R                  VR G   R+ G + +++G  Q+ V
Sbjct: 102 IDCKRWV----SETFDAREM--------------ESVRDGTYVRLSGHLKTFQGKTQLLV 161

Query: 136 SDVVVEDDPNAEILHWLDCM 156
             V    D N    H+++C+
Sbjct: 162 FSVRPIMDFNEVTFHYIECI 162

The following BLAST results are available for this feature:

BLAST of Spg038318 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553655.1	3.1e-76	86.31	CST complex subunit STN1 [Cucurbita pepo subsp. pepo] >XP_023553656.1 CST comple...	[more]
XP_022963452.1	3.1e-76	86.31	LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata]	[more]
KAG6571457.1	3.4e-75	86.39	CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7011223.1	3.4e-75	86.39	CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022967373.1	1.6e-69	87.74	CST complex subunit STN1 [Cucurbita maxima] >XP_022967374.1 CST complex subunit ...	[more]

BLAST of Spg038318 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMK5	1.7e-37	52.98	CST complex subunit STN1 OS=Arabidopsis thaliana OX=3702 GN=STN1 PE=1 SV=1	[more]

BLAST of Spg038318 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HFA9	1.5e-76	86.31	LOW QUALITY PROTEIN: CST complex subunit STN1 OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1HUX0	7.9e-70	87.74	CST complex subunit STN1 OS=Cucurbita maxima OX=3661 GN=LOC111466921 PE=4 SV=1	[more]
A0A5D3E3H2	2.5e-68	80.12	CST complex subunit STN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BLT5	2.5e-68	80.12	CST complex subunit STN1 OS=Cucumis melo OX=3656 GN=LOC103491245 PE=4 SV=1	[more]
A0A0A0LNV0	4.3e-68	82.61	OB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G223720 PE=4 SV=...	[more]

BLAST of Spg038318 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07130.1	1.2e-38	52.98	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G24490.1	9.7e-04	23.57	replicon protein A2	[more]
AT2G24490.2	9.7e-04	23.57	replicon protein A2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	PFAM	PF01336	tRNA_anti-codon	coord: 50..139 e-value: 1.3E-7 score: 31.5
None	No IPR available	GENE3D	2.40.50.140		coord: 8..165 e-value: 1.8E-25 score: 91.3
None	No IPR available	PANTHER	PTHR13989:SF33	CST COMPLEX SUBUNIT STN1	coord: 11..164
IPR040260	Replication factor A protein-like	PANTHER	PTHR13989	REPLICATION PROTEIN A-RELATED	coord: 11..164
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 41..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg038318.1	Spg038318.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003676	nucleic acid binding