Spg038256 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg038256
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionmethyl-CpG-binding domain-containing protein 13 isoform X1
Locationscaffold12: 39075707 .. 39082528 (+)
RNA-Seq ExpressionSpg038256
SyntenySpg038256
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATGGTATCTAACAACTGGAAAGGTGAGCGGTTAGCATATAAATTAAGGAAGCAGAGAAACAACGATATTGAGTTTCAACATGATGACATCTCTGTGACTGTAAGTGCTCTCAAGGTACTCCAAGTTTATATTACCAAAATTTTATATAATGAGACTACCCATCAGTTGTTCAAACTATCCAGTTGAAATAATATGCAAAATGAAATCTGTTTTAAACCTAATTTTTTCCCTTTCCTTCTTTCTCTTAGCCGCTTGCTGTGCCCAAGAAAGAGATGCAAGCGATTGGCAAAGCAAGGAGAGAGATTATATGGAGTGAGAGGTTCATTGGAACCCAGTGAAATAACAAATGATGAAGCTGTTTTTCCAAATGCTACAAGTGTTGGAGAAAGCATGCCTCCTGTACCTAATTCTGATCATGGTATAGTTCTAAACATTGAGCTTCAGTGTAACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTCTTCTTCTTAAACTAGTGTAACATATTTTAAAACTTGAGATAACGAATTCTTTCATTTATTATGGACTAGACCCCTTCTGCCAGTTGAAGATTAATGTGAATTTAATGAACGGCTGCAGGGGAAAAAGGCACTAAAGTGCATTGGTGAACTTTACTAGAGCCCAAAGATCCAGAGCAATCAGATGGAAAGAATGATTTTTCTCAATTTGTGGTGACTCCCAACTTGATAGATAAATCAGTTTATAGGGAACACTCAGCTCTAAGTGTTGCAAACTTTGGCCGAATTTTCTAAGGTACTTCTATTCTCTCGGACCTATTTTATTTTAATATTTAAAAAAATAAATTACATAAACTACATCTAAACTATAGGGATTATTACAATTACACCCTCAAACTTTCAATTTGATCAACTATCTCCAAATTGCAACAATTTTGTAAGTTTATCAGGGTGGTCGATCAAACTGAAAGTTCTAGGGTGTGATTGGAACAATTCTTATGGTTTGGAAGTGACTTATTTTCCATTGTATAAGTCGATTAAATGTTATTTGAATTCACTATTGCAGAGGAAAACTTACCCGTCTTTAATTTTAGCTCGAATTTGGATTTAGTTAAACTAATCATGTAATTTTTAAAACTTTGTTTTATTTAAAAGTTTTTTTTTTTTTTTTTGTATTTATTAAATGTGTTAATTTAGTTTCAAACATTAAGGTCCCATTTGATAACTATTTGGTTTTTTGAAAATTATGCTTGTTTTCTCCCAATTTCCTTACAATGGTTTTCATCTTTGTTAAGGAAACATTTGAATTCTTAGTCAAATTCAAAAAACAAAAACAAGTATTTGAAAACTACTCCTTTTAGTTTTCAAAACTTGACTTGGTTTTTGAAAACAATTAGGTAGATAATAAAACAAAGAAACTTATAGGTGGAAGTAGTGTTTATAAGCTTAATTTTCAAAAACCAAAAATCAAATGATTATCAAATGGGGCTAAGATTTTCCCATTTTTAACCTTTTTATCTTAAATTTTTGTCCTTTCTCTCTATCTCTAACACTTTTTCTCTCTCTACCACCTTTTCTCTCTAAAATGTTTATTTCACTTTTAACTTTCCCTCTAAAATTATTTCACTTCTTAACTTCATCTCTAAAATTTTCATCTCACTTTTTAGTTTTTTCTTTCTAAAATTTTTTCTTGGTAACTTTTTTTCAATCTCTAAAGTTGTTCTCACTTTTTAAATTTTTCTCTCAAAAATTTCTTGTCAATTATTTTCTCTGTAACTTTTTTCTATCTCTAAATTGTTTAGAGAAATAGAAAAATGTTATAAAGGGAGAAAATTTAATAAGTGAGAAAAGAATAATTTTAGAGATAGAAAAAAAGATTAAAAGAGAAAATTTAGAGACAAAAAGGGCAAAAACTGAGAGAGAAAAAGAGAAGAAAATTAAAAAGTGATGAAAATTTTAGAGAGAAAAAGGGTTAACAAGTGAGAGATAAAAATTTTAGAGATAAAGAGAAATAGTTAAAAGAGAAGACTTGGAGAAAAAAAATGTTAGGACAAAAAGAATAAAAAAGGAAAAAAAAAGGAGAAAATTTAAGTGTTTGAGATTAATATTAATATATAGAAAAATATAAAAAAAAAAACTTAAATGAATCAAAGTTTTAAAAATGACATGATAATAAATTCAAATGGAAGTCTCAAATTAATGACAAGGTTGGTTTTCTAACCACAAAAGTGAATTCAACTAGTATTTTAGTCCCTTGAAATTAAAGAACAAAGTCGTTGATTTGATTGCTTTGGTTTCTTTTAAGAATTCGAAACCCTCTGTCAAACGCTCCATTATTTATTCTCTTCTCTTCGCTTCACTCTCTTTTTTCTCTGAGGGAAATCCACCGTCAAAGGCTGCACTAGAAACTACATTTGAAGGGAAGAAGAGTAAAGTGAAAGAAGAGATTGATAACCACGACCACGACCACGAGGGATTGGCAGAAGAATCTGATGTTAAAGTCATGATCAATCGTCATCGATTTGGTATATCTGGTATTGAACTAAATTGAAATTTTTAGGAGACATATATATTTATTGTAAACGTGCTGTTTTTTTTTTATTCTTATTATATTCTTATTATTTCTCTTGTTGGATTAATTGCAACTTGGTGCATTTATATTTTATATAGAATTGGTTTAATAGAATTTGAACTTTGGAGGAAATCTTTTGCTCTTGTGACACTAGCATGCTAATTTAACTTCAAATGCCTAATTGATATTATCTTATTTGGTCTTTTGGTAAAATGATAGTTTTGCCAAGTAGTTATATACAATTGTTTATCGTCCCATTACCATTGCAACTTTTGCTTGATTATCTCGTGTAGCATATGCTTGATGGATTGATAATTAAACCAATAAGCCACACAATTTGTATACCGTGCTAAGATAATGTCATGGAAGTTAAACTAAGCCACATTTTTACTCAAAAATAACATCATTTAGTTTATCACATATGTCAAAGTTAAGAGAATGAGTAAGATCAGATGCCCACTAACAAAACAAATAAATAATTTAGTTTATCTTTCAATAACTATGCATATTATTTGGAGCTGAGATTAACAATTATTTGTCTCCCAGGTAGGCTTGGACTCGATTGGAGTGTTTAGGACTCTTATAGGATCGACCTTCTTACTTGGAACAAACCCAAAGTACATTATATAGTTTACATCTTTCAATAACATTGTTTGATTTGTTTTTTCTTGTCTTGTTTTTTAAGTTATAATTAATAAAAGTTATTGATAATGACAGGTAGACATCTTTCAACACGTTTAAGATTGTCCCATGCAAGAATGGGAGTACAACCTTCGAACAATCCCAGGGTATGTTATACTTTTATCTTTCGATAAAACTGATTCATTTGATTTTCCTTCTCTTTTATGTTCTAATGGATAAAAGTTGAGAATTACAGGTAGATAACTTTCAACAAGCTCAAGATTGTTCCATGCATCAACCGCAGTTTCAACTATCAAAAAGCAGACATTGGAGCTCTATAGGAGTGTCAGGATGGTTAATAAGATTGACCTTCTTAGTAGGAACATCTAAAAGTATATTATAACTTTTCTAGCTTTCAATAAAATTGATTGATTTGATTTTTTTTGTGCTTTAAGTTCTAATTGATCAAAGTTGTTAACTATAATAAATACACATCTTTCAATAAGCTCTAGTTTGTTCCATGTAGGTATTGGAACTCAATTTGGAGTATTAGGACTCTGTAAGATTGAGACCTTCTTAGTTGGAACAATCTCAAAGTATATGATTTGATTTTCCTTGCCTTTTATGTTCTAATTGATAAAAGTTGTTGACAATAATAGGTAGACATTTTTGAATAAGCTCAAGATTGTTCTATGCAGGCATTGGAGCACAATTAGAGTATTAGGCCTCGTGTAATATTGACCTTTTTAGTTGGAACAATCCTAAGGTATATTATGTTGTTTACATGTTTCAATAAAATTGATTGATTTGATTTGCCTCGTGTTTTAAGTTCTAATTAGTAAAAGTTGTTGTTAATGATAGGTTCAAGATTGTCCCATGTAGGAATCAGAGCTCGATTGAAGTGTTAGGACTCTTGTTAAGGTTGACCTTCTTAGTTGGCACAATCCCAAAGTATAATATACTTTTATCATTCAATAAAATTGATTGATTTTATTTATCTTGTCTTTTAAGTGTTAATTGATAAAAGTTGTTGATAATGATAGGTAGACATTCTATCTTTTAAGAAGCTTGAGATTGCTTCATGCAGTCATTGATGTGACCTTCTTGGTTGGACCACTCTTGAAGTATGTTATAATTTTATCTTTCATTAAAATTGAGTGATTCTATTTCCTTCGTTTTTTAAGTTACCAATAATTGATAAAAGTTGCCGACAATGACAGGTAGAGTTCTTTCAAATAATCTCAAGATTGTCCCATGTAGGCATTGGAGCTGAATTGGAGTACTAAGACTCTTGTAAACTGACCTTCTTAGTTGGAACAATATGAAAGTATGTTCTACTTGTATCTTTCAATAAATTTGATTGATTCCATTCTCCTTGTTTTTTTTAAGTTCAACCAAAGTATGTTCTACTTGTATCTTTCAATAAATTTGATTGATTCTATTCTCGTTGCTTCTTAAGTTCTAATAATTTATAGAAGTTGATGAAAATTACAGGTAGACTTGTTTGAATAAGTTCAAGATTGTCCCATGCAGGCATTTTTGAGCTCAATTGGAGTATAAAGATTCTGGTAAGATTGACCTTCTTTTTGGAACAATACCAAAGTATTTATACATTTTACATATGTCAATAAAATTGATTGATTTCATTTTCCTTTTCTTTTAAGTTCTAATTGATATAAGTTGTTAACAATGATGATAGGTAGGCATGTATCAACAAGCTCAAGATTTTTCCATGCAGGAATGTGAGCTCAACTGGAGCGTTACAACTCTTGATAAAGTTGACTTTCTTAGTTGGAATAATTGCAAAGTATGTTATATTTTTTTTGGTTTAGTAAGATTGGTTGATTGCATTTCCTTTTCATTTAAGTTGTAATTGATATTTTTTTGGTTTAGTAAGATTGGTTGATAGCATTTCCTTTTCATTTAAGTTGTAATTGATAAAAGTTGTTGGCAATGATAGGTAGACATCTTTTACTCAAGATTTGTTCCATGCAAGCATTGGAGCAATTGGAATGTTAGGACACTTGATACGATTGACTTTCTTGGTTGGAACAATTTCAAATTATGGTATACTTTTATGTTTCAATAAAATCGATTGTTTTAATTTTCCTTGCTTTTTTAAGTTCTAATTGATAAAAGTTGTTGACCATTCAGGAAGACACCTTTCAACAAGCTCAAAATCATCTCATGTAGGAATGAGAGCTCAATTGGAGTGTTAGGACTCTTGATAAGGTTGACCTTCTTCAATGGAACATTCTCAAAGTATGTTATATTTCTATTGTTGAATAAAATTGATTGATTTGATTTTCCTTGTCTTTTAACTTCTAATTGATAACAGTTGTTGACAATGGCGGGTAGACATATTTCAAAAAACTCAAGATTGTCCCTTGAAGGCATTATATTGGAGCTTAATTGGAGTGTTAGGACTCTTAATAAGAATGACTTTCTTAGTTGGAATAATCCAAAAGCATGGTACATCTTTTCCAACTTTCAATAAATATGATTGATTTTATTTTCGTTGTCTTTTAAGTTATAATTGATAAAAGTTGTTCATTTGTCTCTTTTCATTACATCAATGGAAAGTTTGTTTCTTGTTTAAGAAAATTGATAAAAGTTGTTGACTATATGATAGGTACACATCTTTCAATAAGCTCAAGTTTGTCCCCGGGAGGTGATGTATTGGAGCTCAATTTGGAGTATTAGGACTATGGTAAGATTGACGTTGTTAGTTGGAACGATCCCTAAGTATATGATTTGATTTTCGTTATCTTTTAAGTTCTAATTGATAGAATTATTGACAATAACAGGTAGAATTCTTTGAATAAGGTCAAGATTGTCCCATGCAGGCATTGGAGCACAACACTGTTGTAATATTGACCTTTTTAGTTGAAATACTCCCAAAGTATATTATTTACTCTACTTTTTTTTTTGGAAATAATACTTCCATTAAAACTCACAACAATCCCAACAACCCTAAGAAATGCGCAGGTAAAACGAGAAGGAATCTCAGGAGCCCAAAAATGAAGCCCTGCTTCCCACAAAACCGAAGGCTCCTAAATCTCAATAAAACTGAAATTGCAAGGTAACCTAGAAACACCATGGGTGACTGTGTTCCATTCCCTTCTACAAAATTTGGAGATTACATTTTGAGAGCAAGCAGCGAGGATAGAGATTGCGTCGATGATGGGTTTCACCTCCAACAGATCTTCGTCCGCTCCGTTCAGCAGGTTGACTTCCAGGGCGTCTGATTCCACTTCAATGGGGGTATGGTCTTGATAGCACATCTATTATCATTTTAAGCCCCTCCCATATAGTTGTTGCCTTTAGAACTTTAATAGACCATTTCCTATCGATTTTTTTCATTCCAGCGCAGACCAAGGATCTTCTCGAGTCATGCACCACCCATCCGAGGTCTCCAATTCTTTTTTCCTCCATCCAGGCGGTGGCATCCGTGCTAATCTTCCAGGCGTTTTGCTTTGGTTTCTCCCAGGTTGCGTGACTCGCCAGATTCCTCAATCTCTCCGGATGTTGGCTCTTCAAGTAAGAATTTTCCCATTTGTTTATGCTGTCTTCTATGATTTTGATATTGAAATCTGCTATTGGGGAGATTTTTGTTGTTGA

mRNA sequence

ATGGAAATGGTATCTAACAACTGGAAAGGTGAGCGGTTAGCATATAAATTAAGGAAGCAGAGAAACAACGATATTGAGTTTCAACATGATGACATCTCTGTGACTGTAAGTGCTCTCAAGAGATGCAAGCGATTGGCAAAGCAAGGAGAGAGATTATATGGAGTGAGAGGTTCATTGGAACCCAGTGAAATAACAAATGATGAAGCTGTTTTTCCAAATGCTACAAGTGTTGGAGAAAGCATGCCTCCTGTACCTAATTCTGATCATGAGCCCAAAGATCCAGAGCAATCAGATGGAAAGAATGATTTTTCTCAATTTGTGAATTCGAAACCCTCTGTCAAACGCTCCATTATTTATTCTCTTCTCTTCGCTTCACTCTCTTTTTTCTCTGAGGGAAATCCACCGTCAAAGGCTGCACTAGAAACTACATTTGAAGGGAAGAAGAGTAAAGTGAAAGAAGAGATTGATAACCACGACCACGACCACGAGGGATTGGCAGAAGAATCTGATGTTAAAGTCATGATCAATCGTCATCGATTTGGTATATCTGGTAGACATCTTTCAACACGTTTAAGATTGTCCCATGCAAGAATGGGAGTACAACCTTCGAACAATCCCAGGGTAGGCATGTATCAACAAGCTCAAGATTTTTCCATGCAGGAATGTGAGCTCAACTGGAGCGTTACAACTCTTGATAAAGTTGACTTTCTTAGTTGGAATAATTGCAAAGTAGACATCTTTTACTCAAGATTTGTTCCATGCAAGCATTGGAGCAATTGGAATGTTAGGACACTTGATACGATTGACTTTCTTGGTTGGAACAATTTCAAATTATGGAAGACACCTTTCAACAAGCTCAAAATCATCTCATGTAGGAATGAGAGCTCAATTGGAGTGTTAGGACTCTTGATAAGGTTGACCTTCTTCAATGGAACATTCTCAAAATCTTCGTCCGCTCCGTTCAGCAGGTTGACTTCCAGGGCGTCTGATTCCACTTCAATGGGGGTATGCGCAGACCAAGGATCTTCTCGAGTCATGCACCACCCATCCGAGGTCTCCAATTCTTTTTTCCTCCATCCAGGCGGTGGCATCCGTGCTAATCTTCCAGGCGTTTTGCTTTGGTTTCTCCCAGGTTGCGTGACTCGCCAGATTCCTCAATCTCTCCGGATGTTGGCTCTTCAAGTAAGAATTTTCCCATTTGTTTATGCTGTCTTCTATGATTTTGATATTGAAATCTGCTATTGGGGAGATTTTTGTTGTTGA

Coding sequence (CDS)

ATGGAAATGGTATCTAACAACTGGAAAGGTGAGCGGTTAGCATATAAATTAAGGAAGCAGAGAAACAACGATATTGAGTTTCAACATGATGACATCTCTGTGACTGTAAGTGCTCTCAAGAGATGCAAGCGATTGGCAAAGCAAGGAGAGAGATTATATGGAGTGAGAGGTTCATTGGAACCCAGTGAAATAACAAATGATGAAGCTGTTTTTCCAAATGCTACAAGTGTTGGAGAAAGCATGCCTCCTGTACCTAATTCTGATCATGAGCCCAAAGATCCAGAGCAATCAGATGGAAAGAATGATTTTTCTCAATTTGTGAATTCGAAACCCTCTGTCAAACGCTCCATTATTTATTCTCTTCTCTTCGCTTCACTCTCTTTTTTCTCTGAGGGAAATCCACCGTCAAAGGCTGCACTAGAAACTACATTTGAAGGGAAGAAGAGTAAAGTGAAAGAAGAGATTGATAACCACGACCACGACCACGAGGGATTGGCAGAAGAATCTGATGTTAAAGTCATGATCAATCGTCATCGATTTGGTATATCTGGTAGACATCTTTCAACACGTTTAAGATTGTCCCATGCAAGAATGGGAGTACAACCTTCGAACAATCCCAGGGTAGGCATGTATCAACAAGCTCAAGATTTTTCCATGCAGGAATGTGAGCTCAACTGGAGCGTTACAACTCTTGATAAAGTTGACTTTCTTAGTTGGAATAATTGCAAAGTAGACATCTTTTACTCAAGATTTGTTCCATGCAAGCATTGGAGCAATTGGAATGTTAGGACACTTGATACGATTGACTTTCTTGGTTGGAACAATTTCAAATTATGGAAGACACCTTTCAACAAGCTCAAAATCATCTCATGTAGGAATGAGAGCTCAATTGGAGTGTTAGGACTCTTGATAAGGTTGACCTTCTTCAATGGAACATTCTCAAAATCTTCGTCCGCTCCGTTCAGCAGGTTGACTTCCAGGGCGTCTGATTCCACTTCAATGGGGGTATGCGCAGACCAAGGATCTTCTCGAGTCATGCACCACCCATCCGAGGTCTCCAATTCTTTTTTCCTCCATCCAGGCGGTGGCATCCGTGCTAATCTTCCAGGCGTTTTGCTTTGGTTTCTCCCAGGTTGCGTGACTCGCCAGATTCCTCAATCTCTCCGGATGTTGGCTCTTCAAGTAAGAATTTTCCCATTTGTTTATGCTGTCTTCTATGATTTTGATATTGAAATCTGCTATTGGGGAGATTTTTGTTGTTGA

Protein sequence

MEMVSNNWKGERLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVFPNATSVGESMPPVPNSDHEPKDPEQSDGKNDFSQFVNSKPSVKRSIIYSLLFASLSFFSEGNPPSKAALETTFEGKKSKVKEEIDNHDHDHEGLAEESDVKVMINRHRFGISGRHLSTRLRLSHARMGVQPSNNPRVGMYQQAQDFSMQECELNWSVTTLDKVDFLSWNNCKVDIFYSRFVPCKHWSNWNVRTLDTIDFLGWNNFKLWKTPFNKLKIISCRNESSIGVLGLLIRLTFFNGTFSKSSSAPFSRLTSRASDSTSMGVCADQGSSRVMHHPSEVSNSFFLHPGGGIRANLPGVLLWFLPGCVTRQIPQSLRMLALQVRIFPFVYAVFYDFDIEICYWGDFCC
Homology
[Close]
BLAST of Spg038256 vs. NCBI nr
Match: KAG6574171.1 (Methyl-CpG-binding domain-containing protein 13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.4 bits (233), Expect = 2.6e-15
Identity = 55/107 (51.40%), Postives = 66/107 (61.68%), Query Frame = 0 

Query: 12  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVF 71
           RLAYK R QR  D+EFQHDDIS      K  + + K   ++   +  LEP +ITNDEA+F
Sbjct: 131 RLAYKSRDQRGIDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNKNLLEPRDITNDEAIF 190

Query: 72  PNATSVGESMP-PVPNSDHEPKD--------PEQSDGKNDFSQFVNS 110
           PNATSVGESMP   P+S H            PEQSDGKNDFS+ V +
Sbjct: 191 PNATSVGESMPHSEPDSSHGEIGTDVHCSTLPEQSDGKNDFSELVTT 237

[Close]
BLAST of Spg038256 vs. NCBI nr
Match: XP_022944809.1 (methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 4.4e-15
Identity = 55/107 (51.40%), Postives = 66/107 (61.68%), Query Frame = 0 

Query: 12  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVF 71
           RLAYK R QR  ++EFQHDDIS    + K  + + K   ++      LEP EITNDEA+F
Sbjct: 131 RLAYKSRDQRGINVEFQHDDISSPAVSKKEMQAIGKARRQIIWNENLLEPREITNDEAIF 190

Query: 72  PNATSVGESMP-PVPNSDHEPKD--------PEQSDGKNDFSQFVNS 110
           PNATSVGESMP   P+S H            PEQSDGKNDFS+ V +
Sbjct: 191 PNATSVGESMPHSEPDSSHGEIGTDVHCSTLPEQSDGKNDFSELVTT 237

[Close]
BLAST of Spg038256 vs. NCBI nr
Match: XP_022944808.1 (methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 9.8e-15
Identity = 55/111 (49.55%), Postives = 66/111 (59.46%), Query Frame = 0 

Query: 12  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVF 71
           RLAYK R QR  ++EFQHDDIS    + K  + + K   ++      LEP EITNDEA+F
Sbjct: 131 RLAYKSRDQRGINVEFQHDDISSPAVSKKEMQAIGKARRQIIWNENLLEPREITNDEAIF 190

Query: 72  PNATSVGESMP-PVPNSDHEPKD------------PEQSDGKNDFSQFVNS 110
           PNATSVGESMP   P+S H                PEQSDGKNDFS+ V +
Sbjct: 191 PNATSVGESMPHSEPDSSHVTAAGEIGTDVHCSTLPEQSDGKNDFSELVTT 241

[Close]
BLAST of Spg038256 vs. NCBI nr
Match: XP_023541412.1 (methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.4 bits (228), Expect = 9.8e-15
Identity = 55/107 (51.40%), Postives = 64/107 (59.81%), Query Frame = 0 

Query: 12  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVF 71
           RLAYK R QR  D+EFQHDDIS      K  + + K   ++      LEP EITNDEA+F
Sbjct: 131 RLAYKSRDQRGIDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEPREITNDEAIF 190

Query: 72  PNATSVGESMP-PVPNSDHEPKD--------PEQSDGKNDFSQFVNS 110
           PNATSVGESMP   P+S H            PEQSDGKNDF + V +
Sbjct: 191 PNATSVGESMPHSEPDSSHGEIGIDVHCSTLPEQSDGKNDFFELVTT 237

[Close]
BLAST of Spg038256 vs. NCBI nr
Match: KAG7013226.1 (Methyl-CpG-binding domain-containing protein 13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-14
Identity = 54/107 (50.47%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 12  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVF 71
           RLAYK R QR  D+EFQHDDIS      K  + + K   ++      LEP +ITN+EA+F
Sbjct: 130 RLAYKSRDQRGIDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEPRDITNNEAIF 189

Query: 72  PNATSVGESMP-PVPNSDHEPKD--------PEQSDGKNDFSQFVNS 110
           PNATSVGESMP   P+S H            PEQSDGKNDFS+ V +
Sbjct: 190 PNATSVGESMPHSEPDSSHGEIGTDVHCSTLPEQSDGKNDFSELVTT 236

[Close]
BLAST of Spg038256 vs. ExPASy TrEMBL
Match: A0A6J1FZ67 (methyl-CpG-binding domain-containing protein 13 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449236 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-15
Identity = 55/107 (51.40%), Postives = 66/107 (61.68%), Query Frame = 0 

Query: 12  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVF 71
           RLAYK R QR  ++EFQHDDIS    + K  + + K   ++      LEP EITNDEA+F
Sbjct: 131 RLAYKSRDQRGINVEFQHDDISSPAVSKKEMQAIGKARRQIIWNENLLEPREITNDEAIF 190

Query: 72  PNATSVGESMP-PVPNSDHEPKD--------PEQSDGKNDFSQFVNS 110
           PNATSVGESMP   P+S H            PEQSDGKNDFS+ V +
Sbjct: 191 PNATSVGESMPHSEPDSSHGEIGTDVHCSTLPEQSDGKNDFSELVTT 237

[Close]
BLAST of Spg038256 vs. ExPASy TrEMBL
Match: A0A6J1FZ39 (methyl-CpG-binding domain-containing protein 13 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449236 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.7e-15
Identity = 55/111 (49.55%), Postives = 66/111 (59.46%), Query Frame = 0 

Query: 12  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVF 71
           RLAYK R QR  ++EFQHDDIS    + K  + + K   ++      LEP EITNDEA+F
Sbjct: 131 RLAYKSRDQRGINVEFQHDDISSPAVSKKEMQAIGKARRQIIWNENLLEPREITNDEAIF 190

Query: 72  PNATSVGESMP-PVPNSDHEPKD------------PEQSDGKNDFSQFVNS 110
           PNATSVGESMP   P+S H                PEQSDGKNDFS+ V +
Sbjct: 191 PNATSVGESMPHSEPDSSHVTAAGEIGTDVHCSTLPEQSDGKNDFSELVTT 241

[Close]
BLAST of Spg038256 vs. ExPASy TrEMBL
Match: A0A6J1HUA1 (methyl-CpG-binding domain-containing protein 13 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467524 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-12
Identity = 51/107 (47.66%), Postives = 62/107 (57.94%), Query Frame = 0 

Query: 12  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVF 71
           RL YK R QR  D+EFQHDDIS      K  + + K   ++      LEP EITN+EA+F
Sbjct: 131 RLVYKSRDQRGVDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEPHEITNNEAIF 190

Query: 72  PNATSVGESMP-PVPNSDHEPKD--------PEQSDGKNDFSQFVNS 110
           PNATSV ES+P   P+S H            PEQSD KNDFS+ V +
Sbjct: 191 PNATSVRESIPHSEPDSSHGEIGSDVLCSTLPEQSDRKNDFSELVTT 237

[Close]
BLAST of Spg038256 vs. ExPASy TrEMBL
Match: A0A6J1HWM1 (methyl-CpG-binding domain-containing protein 13 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467524 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.9e-12
Identity = 51/111 (45.95%), Postives = 62/111 (55.86%), Query Frame = 0 

Query: 12  RLAYKLRKQRNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITNDEAVF 71
           RL YK R QR  D+EFQHDDIS      K  + + K   ++      LEP EITN+EA+F
Sbjct: 131 RLVYKSRDQRGVDVEFQHDDISSPAVPKKEMQAIGKARRQIIWNENLLEPHEITNNEAIF 190

Query: 72  PNATSVGESMP-PVPNSDHEPKD------------PEQSDGKNDFSQFVNS 110
           PNATSV ES+P   P+S H                PEQSD KNDFS+ V +
Sbjct: 191 PNATSVRESIPHSEPDSSHVTAAGEIGSDVLCSTLPEQSDRKNDFSELVTT 241

[Close]
BLAST of Spg038256 vs. ExPASy TrEMBL
Match: A0A6J1J2L9 (methyl-CpG-binding domain-containing protein 13-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482847 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-11
Identity = 53/117 (45.30%), Postives = 68/117 (58.12%), Query Frame = 0 

Query: 9   KGERLAYKLRKQ--RNNDIEFQHDDISVTVSALKRCKRLAKQGERLYGVRGSLEPSEITN 68
           K  RLAYK R Q   N++IEFQHDDIS +  + K    + K   ++     S EPSEI +
Sbjct: 128 KVSRLAYKSRSQSNSNSNIEFQHDDISSSSVSKKEMLAIGKAKRQIIWSDNSPEPSEIAD 187

Query: 69  DEAVFPNATSVGESMPPV-PNSDH-------------EPKDPEQSDGKNDFSQFVNS 110
           DEA+FP A SVGE MP + PN  H             E K+ EQS+GKN FS+FV++
Sbjct: 188 DEAIFPKAASVGERMPFLKPNLTHGRIGAKLRCSTPEEAKEREQSEGKNSFSEFVST 244

The following BLAST results are available for this feature:
BLAST of Spg038256 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6574171.12.6e-1551.40Methyl-CpG-binding domain-containing protein 13, partial [Cucurbita argyrosperma... [more]
XP_022944809.14.4e-1551.40methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucurbita moschata][more]
XP_022944808.19.8e-1549.55methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucurbita moschata][more]
XP_023541412.19.8e-1551.40methyl-CpG-binding domain-containing protein 13 isoform X2 [Cucurbita pepo subsp... [more]
KAG7013226.11.7e-1450.47Methyl-CpG-binding domain-containing protein 13, partial [Cucurbita argyrosperma... [more]
BLAST of Spg038256 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg038256 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FZ672.1e-1551.40methyl-CpG-binding domain-containing protein 13 isoform X2 OS=Cucurbita moschata... [more]
A0A6J1FZ394.7e-1549.55methyl-CpG-binding domain-containing protein 13 isoform X1 OS=Cucurbita moschata... [more]
A0A6J1HUA12.2e-1247.66methyl-CpG-binding domain-containing protein 13 isoform X2 OS=Cucurbita maxima O... [more]
A0A6J1HWM14.9e-1245.95methyl-CpG-binding domain-containing protein 13 isoform X1 OS=Cucurbita maxima O... [more]
A0A6J1J2L91.4e-1145.30methyl-CpG-binding domain-containing protein 13-like isoform X1 OS=Cucurbita max... [more]
BLAST of Spg038256 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 148..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg038256.1Spg038256.1mRNA