Spg038190 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg038190
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribosome-recycling factor, chloroplastic
Location	scaffold12: 43204793 .. 43206478 (+)
RNA-Seq Expression	Spg038190
Synteny	Spg038190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGCCTTTCTCCTCCACCACTTCTGTCCGTTCCGTCTTCCAACCCAAACAAAAACCCCCTCCCAAAGCCCTCCTCTCGTTCCGAGTAGATTATAATGGATGGTTAAATTACGCAAAATGCGGTTCGAGTACGGTGCATCTATGTTCATGGAAGTCAGCTTCGAACTTCCTTAGCCTCAAGCGGTATGCCCTAGTGCTCTCTACCCAACTCTTTGTTTCTGGGAATCTGTTGAAAAACAGGCTAAGCTATTTCTTTCATTTCATTTACTTTCTTACTGTTCTTGTCGCGCTGTGCCATGTGAATTTGTGTAAATTGTACACCCTCTGAGAAGTGGTAATATGGAACAAAAGTATGATAAACATACAAGCATTTTGCATTTGGATTCGTCATTGCCTTATTGCTCCGTGAAGTTTACTGTGGTGGCTTTTCAGTTGTGTTGACATTCTTCTCCCCCTCCTTTTTTTTGGCCATGACAATTTTCAGAAGAGGAGTCGTGAGAGCTGCAACTATCGAAGAAATTGAAGCGGAGAAGACATTGATTGAGAAAGATGTAGTAAGTTCATATGTTCATTGATTTGGAGACTTGCTGTGTTTTTTAATCAAGTAATCTAAGGTTAGGAACATTGTTGCGAATTACCATTGAATTACTTTCCAGAGAGCAAGGATGGAAAAGACTATAGATACTGTTCGGTCTAGTTTCAACTCAATAAGGACTGGCAGAGCAAATCCTGCCATGCTTGATAAGATTGAGGTATATGCTAATTCTTAAACTCAGGTCGTTGGTGGATAGATGTCTACTTAGAACATTTATTTTTTCAAACTATCAGATGAGTATCATGCCAATCATATCACTACCATACAAAAATTTGTCGCTTTTTCATGATTTTCCAGGTGGAGTATTACGGCAGTCCAGTTAGCCTGAAGAGCATTGCCCAAATTAGTACACCTGATGCAAGCTCTCTCTTGGTCCAACCATATGATAAATCCAGGTACTCCATGTGCCAGTTGGCTGAGTTGAATATATTTGGAAACCTTTTGGGATATGCTGGTCATTTGGTGTACCTTTTCCTTATAGAAAACAAGCACTTTACGGATTAAGCTTTTCCAAATTCCTGTTATTTTAGAATCATAAAGGGGTAAATATAAAACAAAAGGACAAGTTTTCTTCGATCACCATACCTTTTACTCTAAACCCTTGAATATCGAGGATCTTCGTCAATCCTTTATTCATTTGAAACCTGTAGTTACTAGTCTTAGCTTGCTTTTCTTACCTACTTAATGCTTCAGAATTTTGTCATTGTAATTCCTGTTTTTCCGAGAAAAAGGTTTCAGACGTGCAGTTGGAGCTTTTAGATCTTCTCTAATCTTGAGTCTGTGACTTCATTGGTTGAAACTGCTATGGACATAACCATCCTATTATTATTAGCTATAGAATGATGTCATCCAGCTGTACAGTGTAATGCATTTGTATAATGTCTCTTGGCAATCAGCATTAACTCTTAACGAGTCATCATCTTCAGCTTGAAGTCCATAGAGAAGGCCATAGTCAACTCTGACTTGGGATTGACTCCCAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACATCCGAAAGAAGAAAGGTATTTTCCTTTGCGTTTGCTAACATTTTTGAACAAGATGTAGCATAA

mRNA sequence

ATGGCGACGCCTTTCTCCTCCACCACTTCTGTCCGTTCCGTCTTCCAACCCAAACAAAAACCCCCTCCCAAAGCCCTCCTCTCGTTCCGAGTAGATTATAATGGATGGTTAAATTACGCAAAATGCGGTTCGAGTACGGTGCATCTATGTTCATGGAAGTCAGCTTCGAACTTCCTTAGCCTCAAGCGGTATGCCCTAGTGCTCTCTACCCAACTCTTTGTTTCTGGGAATCTGTTGAAAAACAGGCTAAGCTATTTCTTTCATTTCATTTACTTTCTTACTGTTCTTGTCGCGCTGTGCCATCATTTTGCATTTGGATTCGTCATTGCCTTATTGCTCCGTGAAGTTTACTGTGGTGGCTTTTCAGTTGTGTTGACATTCTTCTCCCCCTCCTTTTTTTTGGCCATGACAATTTTCAGAAGAGGAGTCGTGAGAGCTGCAACTATCGAAGAAATTGAAGCGGAGAAGACATTGATTGAGAAAGATGTAAGAGCAAGGATGGAAAAGACTATAGATACTGTTCGGTCTAGTTTCAACTCAATAAGGACTGGCAGAGCAAATCCTGCCATGCTTGATAAGATTGAGGTGGAGTATTACGGCAGTCCAGTTAGCCTGAAGAGCATTGCCCAAATTAGTACACCTGATGCAAGCTCTCTCTTGGTCCAACCATATGATAAATCCAGCTTGAAGTCCATAGAGAAGGCCATAGTCAACTCTGACTTGGGATTGACTCCCAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACATCCGAAAGAAGAAAGGTATTTTCCTTTGCGTTTGCTAACATTTTTGAACAAGATGTAGCATAA

Coding sequence (CDS)

ATGGCGACGCCTTTCTCCTCCACCACTTCTGTCCGTTCCGTCTTCCAACCCAAACAAAAACCCCCTCCCAAAGCCCTCCTCTCGTTCCGAGTAGATTATAATGGATGGTTAAATTACGCAAAATGCGGTTCGAGTACGGTGCATCTATGTTCATGGAAGTCAGCTTCGAACTTCCTTAGCCTCAAGCGGTATGCCCTAGTGCTCTCTACCCAACTCTTTGTTTCTGGGAATCTGTTGAAAAACAGGCTAAGCTATTTCTTTCATTTCATTTACTTTCTTACTGTTCTTGTCGCGCTGTGCCATCATTTTGCATTTGGATTCGTCATTGCCTTATTGCTCCGTGAAGTTTACTGTGGTGGCTTTTCAGTTGTGTTGACATTCTTCTCCCCCTCCTTTTTTTTGGCCATGACAATTTTCAGAAGAGGAGTCGTGAGAGCTGCAACTATCGAAGAAATTGAAGCGGAGAAGACATTGATTGAGAAAGATGTAAGAGCAAGGATGGAAAAGACTATAGATACTGTTCGGTCTAGTTTCAACTCAATAAGGACTGGCAGAGCAAATCCTGCCATGCTTGATAAGATTGAGGTGGAGTATTACGGCAGTCCAGTTAGCCTGAAGAGCATTGCCCAAATTAGTACACCTGATGCAAGCTCTCTCTTGGTCCAACCATATGATAAATCCAGCTTGAAGTCCATAGAGAAGGCCATAGTCAACTCTGACTTGGGATTGACTCCCAACAATGATGGAGAAGTCATACGGTTGACTCTCCCTCAACTCACATCCGAAAGAAGAAAGGTATTTTCCTTTGCGTTTGCTAACATTTTTGAACAAGATGTAGCATAA

Protein sequence

MATPFSSTTSVRSVFQPKQKPPPKALLSFRVDYNGWLNYAKCGSSTVHLCSWKSASNFLSLKRYALVLSTQLFVSGNLLKNRLSYFFHFIYFLTVLVALCHHFAFGFVIALLLREVYCGGFSVVLTFFSPSFFLAMTIFRRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERRKVFSFAFANIFEQDVA

Homology

[Close]

BLAST of Spg038190 vs. NCBI nr
Match: XP_038888223.1 (ribosome-recycling factor, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 322.8 bits (826), Expect = 3.0e-84
Identity = 191/278 (68.71%), Postives = 197/278 (70.86%), Query Frame = 0


Query: 1   MATPFSSTTSV-RSVFQPKQKPPPKALLSFRVDYNGWLNYAKCGSSTVHLCSWKSASNFL 60
           MATPFSSTTSV RSVFQ  Q PPPKALLS R DYN  LN  KCGSST HLCSWKSASN++
Sbjct: 1   MATPFSSTTSVRRSVFQLTQNPPPKALLSLR-DYNAGLNCVKCGSSTTHLCSWKSASNYV 60

Query: 61  SLKRYALVLSTQLFVSGNLLKNRLSYFFHFIYFLTVLVALCHHFAFGFVIALLLREVYCG 120
            L R ALVLSTQL VSGNLLKN                                      
Sbjct: 61  RLHRQALVLSTQLSVSGNLLKN-------------------------------------- 120

Query: 121 GFSVVLTFFSPSFFLAMTIFRRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFN 180
                               RRGVVRAATIEEIEAEKTLIEKDV+ARMEKTIDTVRS+FN
Sbjct: 121 --------------------RRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFN 180

Query: 181 SIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS 240
           SIRTGR+NPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS
Sbjct: 181 SIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS 219

Query: 241 DLGLTPNNDGEVIRLTLPQLTSERRKVFSFAFANIFEQ 278
           DLGLTPNNDGEVIRLTLPQLTSERRK  S   A   E+
Sbjct: 241 DLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 219

[Close]

BLAST of Spg038190 vs. NCBI nr
Match: XP_038888224.1 (ribosome-recycling factor, chloroplastic isoform X2 [Benincasa hispida])

HSP 1 Score: 320.1 bits (819), Expect = 1.9e-83
Identity = 190/278 (68.35%), Postives = 196/278 (70.50%), Query Frame = 0


Query: 1   MATPFSSTTSV-RSVFQPKQKPPPKALLSFRVDYNGWLNYAKCGSSTVHLCSWKSASNFL 60
           MATPFSSTTSV RSVFQ  Q PPPKALLS R DYN  LN  KCGSST HLCSWKSASN++
Sbjct: 1   MATPFSSTTSVRRSVFQLTQNPPPKALLSLR-DYNAGLNCVKCGSSTTHLCSWKSASNYV 60

Query: 61  SLKRYALVLSTQLFVSGNLLKNRLSYFFHFIYFLTVLVALCHHFAFGFVIALLLREVYCG 120
            L R ALVLSTQL VSGNLLKN                                      
Sbjct: 61  RLHRQALVLSTQLSVSGNLLKN-------------------------------------- 120

Query: 121 GFSVVLTFFSPSFFLAMTIFRRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFN 180
                                RGVVRAATIEEIEAEKTLIEKDV+ARMEKTIDTVRS+FN
Sbjct: 121 ---------------------RGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFN 180

Query: 181 SIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS 240
           SIRTGR+NPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS
Sbjct: 181 SIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS 218

Query: 241 DLGLTPNNDGEVIRLTLPQLTSERRKVFSFAFANIFEQ 278
           DLGLTPNNDGEVIRLTLPQLTSERRK  S   A   E+
Sbjct: 241 DLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 218

[Close]

BLAST of Spg038190 vs. NCBI nr
Match: XP_023533411.1 (ribosome-recycling factor, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.5 bits (807), Expect = 4.7e-82
Identity = 181/277 (65.34%), Postives = 195/277 (70.40%), Query Frame = 0


Query: 1   MATPFSSTTSVRSVFQPKQKPPPKALLSFRVDYNGWLNYAKCGSSTVHLCSWKSASNFLS 60
           MATPFSSTTS+RSVFQPKQ PPPKALLS R DYN  LN  KCGS+T HL SWKSASN++ 
Sbjct: 1   MATPFSSTTSLRSVFQPKQIPPPKALLSIR-DYNAGLNCVKCGSTTTHLSSWKSASNYIR 60

Query: 61  LKRYALVLSTQLFVSGNLLKNRLSYFFHFIYFLTVLVALCHHFAFGFVIALLLREVYCGG 120
           ++R+AL+L TQ F SGNL K                                        
Sbjct: 61  IRRHALMLPTQPFQSGNLSK---------------------------------------- 120

Query: 121 FSVVLTFFSPSFFLAMTIFRRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFNS 180
                             +RRGV+RAATIEEIEAEK LIEKDVRARMEKTIDTVRSSFNS
Sbjct: 121 ------------------YRRGVIRAATIEEIEAEKALIEKDVRARMEKTIDTVRSSFNS 180

Query: 181 IRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 240
           IRTGRANPAMLDKIEVEYYGSPV LKSIAQISTPDASSLL+QPYDKSSLKSIEKAIVNS+
Sbjct: 181 IRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSLKSIEKAIVNSN 218

Query: 241 LGLTPNNDGEVIRLTLPQLTSERRKVFSFAFANIFEQ 278
           LG+TPNNDGEVIRLTLPQLTSERRK  S   A   E+
Sbjct: 241 LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 218

[Close]

BLAST of Spg038190 vs. NCBI nr
Match: XP_022995869.1 (ribosome-recycling factor, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 309.7 bits (792), Expect = 2.6e-80
Identity = 178/277 (64.26%), Postives = 193/277 (69.68%), Query Frame = 0


Query: 1   MATPFSSTTSVRSVFQPKQKPPPKALLSFRVDYNGWLNYAKCGSSTVHLCSWKSASNFLS 60
           MATPFSSTTS+R VFQPKQ PPPKALLS R DYN  LN  KCGS+T+HL SWKSASN+  
Sbjct: 1   MATPFSSTTSLRPVFQPKQIPPPKALLSIR-DYNAGLNCVKCGSTTMHLSSWKSASNYFR 60

Query: 61  LKRYALVLSTQLFVSGNLLKNRLSYFFHFIYFLTVLVALCHHFAFGFVIALLLREVYCGG 120
           ++R+AL+L TQ F SGNL K                                        
Sbjct: 61  IRRHALMLPTQPFPSGNLSK---------------------------------------- 120

Query: 121 FSVVLTFFSPSFFLAMTIFRRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFNS 180
                             +RRGV+RAATIEEIEAEK LIEKDVRARMEKTIDTVRSSFNS
Sbjct: 121 ------------------YRRGVIRAATIEEIEAEKALIEKDVRARMEKTIDTVRSSFNS 180

Query: 181 IRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 240
           IRTGRANPAMLDKIEVEYYGSPV LKSIAQISTPDASSLL+QPYDKSSLK IEKAIVNS+
Sbjct: 181 IRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSLKLIEKAIVNSN 218

Query: 241 LGLTPNNDGEVIRLTLPQLTSERRKVFSFAFANIFEQ 278
           LG+TPNNDG+VIRLTLPQLTSERRK  S   A   E+
Sbjct: 241 LGMTPNNDGDVIRLTLPQLTSERRKELSKVVAKQAEE 218

[Close]

BLAST of Spg038190 vs. NCBI nr
Match: XP_022931084.1 (ribosome-recycling factor, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 309.7 bits (792), Expect = 2.6e-80
Identity = 179/277 (64.62%), Postives = 194/277 (70.04%), Query Frame = 0


Query: 1   MATPFSSTTSVRSVFQPKQKPPPKALLSFRVDYNGWLNYAKCGSSTVHLCSWKSASNFLS 60
           MATPFSSTTS+RSVF+PKQ PPPKALLS R DYN  LN  KCGS+T  L SWKSASN++ 
Sbjct: 1   MATPFSSTTSLRSVFRPKQIPPPKALLSIR-DYNAGLNCIKCGSTTTPLSSWKSASNYIR 60

Query: 61  LKRYALVLSTQLFVSGNLLKNRLSYFFHFIYFLTVLVALCHHFAFGFVIALLLREVYCGG 120
           ++R+AL+L TQ F SGNL K                                        
Sbjct: 61  IRRHALMLPTQPFQSGNLSK---------------------------------------- 120

Query: 121 FSVVLTFFSPSFFLAMTIFRRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFNS 180
                             +RRGV+RAATIEEIEAEK LIEKDVRARMEKTIDTVRSSFNS
Sbjct: 121 ------------------YRRGVIRAATIEEIEAEKALIEKDVRARMEKTIDTVRSSFNS 180

Query: 181 IRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 240
           IRTGRANPAMLDKIEVEYYGSPV LKSIAQISTPDASSLL+QPYDKSSLKSIEKAIVNS+
Sbjct: 181 IRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSLKSIEKAIVNSN 218

Query: 241 LGLTPNNDGEVIRLTLPQLTSERRKVFSFAFANIFEQ 278
           LG+TPNNDGEVIRLTLPQLTSERRK  S   A   E+
Sbjct: 241 LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 218

[Close]

BLAST of Spg038190 vs. ExPASy Swiss-Prot
Match: Q9M1X0 (Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RRF PE=2 SV=2)

HSP 1 Score: 204.5 bits (519), Expect = 1.5e-51
Identity = 106/138 (76.81%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 140 RRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYY 199
           +R V+R+ATIEEIEAEK+ IE DV+++MEKTI+T+R+SFNSIRTGR+N AMLDKIEVEYY
Sbjct: 76  KRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYY 135

Query: 200 GSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQL 259
           GSPVSLKSIAQISTPD SSLL+QPYDKSSLK+IEKAIVNSDLG+TPNNDG+VIRL+LP L
Sbjct: 136 GSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPL 195

Query: 260 TSERRKVFSFAFANIFEQ 278
           TS+RRK  S   A   E+
Sbjct: 196 TSDRRKELSKVVAKQSEE 213

[Close]

BLAST of Spg038190 vs. ExPASy Swiss-Prot
Match: P37706 (Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota OX=4039 GN=RRF PE=2 SV=2)

HSP 1 Score: 196.1 bits (497), Expect = 5.5e-49
Identity = 100/138 (72.46%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 140 RRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYY 199
           R G ++ AT+EEIEAEK+LIEK V+ RMEKTI+ V++SFNSIRT R+NP MLDKI+VEYY
Sbjct: 28  RTGTLKCATMEEIEAEKSLIEKSVKERMEKTIENVKASFNSIRTXRSNPDMLDKIKVEYY 87

Query: 200 GSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQL 259
           G+P SLKSIAQISTPD+SSLLV PYDKSSLK IEKAIVNSDLG+TPNNDG+VIRL++PQL
Sbjct: 88  GTPTSLKSIAQISTPDSSSLLVNPYDKSSLKDIEKAIVNSDLGITPNNDGDVIRLSIPQL 147

Query: 260 TSERRKVFSFAFANIFEQ 278
           T++RRK  S   A   E+
Sbjct: 148 TADRRKELSKIVAKQAEE 165

[Close]

BLAST of Spg038190 vs. ExPASy Swiss-Prot
Match: P82231 (Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea OX=3562 GN=RRF PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 6.1e-48
Identity = 96/138 (69.57%), Postives = 118/138 (85.51%), Query Frame = 0


Query: 140 RRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYY 199
           R G  R AT+EE+EAEK+LIE + + RMEKTI+T+RS+FNS+RT RA+P MLD+IEVEYY
Sbjct: 72  RAGTFRCATMEEVEAEKSLIETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYY 131

Query: 200 GSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQL 259
           G+PVSLKSIAQISTPDASSLL+ PYDKSSLK+IEKAIV S LG++PNNDGEVIRL+LP L
Sbjct: 132 GTPVSLKSIAQISTPDASSLLISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPL 191

Query: 260 TSERRKVFSFAFANIFEQ 278
           TS+RRK  +   + + E+
Sbjct: 192 TSDRRKELAKVVSKLAEE 209

[Close]

BLAST of Spg038190 vs. ExPASy Swiss-Prot
Match: A2YMU2 (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26546 PE=1 SV=2)

HSP 1 Score: 188.7 bits (478), Expect = 8.7e-47
Identity = 94/138 (68.12%), Postives = 120/138 (86.96%), Query Frame = 0


Query: 140 RRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYY 199
           +R V+R ATIEEIEAEK++IE   R RMEK I+TV+++FN++RTGRANPAMLD+IEVEYY
Sbjct: 67  KRAVLRHATIEEIEAEKSVIEDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYY 126

Query: 200 GSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQL 259
           G+PV+LKSIAQI+TPDA+SLL+QPYDKSSLK IEK IV ++LG+TP+NDGEVIR+T+P L
Sbjct: 127 GTPVNLKSIAQINTPDATSLLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPL 186

Query: 260 TSERRKVFSFAFANIFEQ 278
           TS+RRK  +   A + E+
Sbjct: 187 TSDRRKELAKTVAKLAEE 204

[Close]

BLAST of Spg038190 vs. ExPASy Swiss-Prot
Match: A3BLC3 (Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0570700 PE=2 SV=2)

HSP 1 Score: 188.7 bits (478), Expect = 8.7e-47
Identity = 94/138 (68.12%), Postives = 120/138 (86.96%), Query Frame = 0


Query: 140 RRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYY 199
           +R V+R ATIEEIEAEK++IE   R RMEK I+TV+++FN++RTGRANPAMLD+IEVEYY
Sbjct: 67  KRAVLRHATIEEIEAEKSVIEDQARERMEKAIETVQNNFNTVRTGRANPAMLDRIEVEYY 126

Query: 200 GSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQL 259
           G+PV+LKSIAQI+TPDA+SLL+QPYDKSSLK IEK IV ++LG+TP+NDGEVIR+T+P L
Sbjct: 127 GTPVNLKSIAQINTPDATSLLIQPYDKSSLKLIEKTIVAANLGVTPSNDGEVIRVTVPPL 186

Query: 260 TSERRKVFSFAFANIFEQ 278
           TS+RRK  +   A + E+
Sbjct: 187 TSDRRKELAKTVAKLAEE 204

[Close]

BLAST of Spg038190 vs. ExPASy TrEMBL
Match: A0A6J1K744 (Ribosome-recycling factor, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491268 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.3e-80
Identity = 178/277 (64.26%), Postives = 193/277 (69.68%), Query Frame = 0


Query: 1   MATPFSSTTSVRSVFQPKQKPPPKALLSFRVDYNGWLNYAKCGSSTVHLCSWKSASNFLS 60
           MATPFSSTTS+R VFQPKQ PPPKALLS R DYN  LN  KCGS+T+HL SWKSASN+  
Sbjct: 1   MATPFSSTTSLRPVFQPKQIPPPKALLSIR-DYNAGLNCVKCGSTTMHLSSWKSASNYFR 60

Query: 61  LKRYALVLSTQLFVSGNLLKNRLSYFFHFIYFLTVLVALCHHFAFGFVIALLLREVYCGG 120
           ++R+AL+L TQ F SGNL K                                        
Sbjct: 61  IRRHALMLPTQPFPSGNLSK---------------------------------------- 120

Query: 121 FSVVLTFFSPSFFLAMTIFRRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFNS 180
                             +RRGV+RAATIEEIEAEK LIEKDVRARMEKTIDTVRSSFNS
Sbjct: 121 ------------------YRRGVIRAATIEEIEAEKALIEKDVRARMEKTIDTVRSSFNS 180

Query: 181 IRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 240
           IRTGRANPAMLDKIEVEYYGSPV LKSIAQISTPDASSLL+QPYDKSSLK IEKAIVNS+
Sbjct: 181 IRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSLKLIEKAIVNSN 218

Query: 241 LGLTPNNDGEVIRLTLPQLTSERRKVFSFAFANIFEQ 278
           LG+TPNNDG+VIRLTLPQLTSERRK  S   A   E+
Sbjct: 241 LGMTPNNDGDVIRLTLPQLTSERRKELSKVVAKQAEE 218

[Close]

BLAST of Spg038190 vs. ExPASy TrEMBL
Match: A0A6J1ESI6 (Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437377 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.3e-80
Identity = 179/277 (64.62%), Postives = 194/277 (70.04%), Query Frame = 0


Query: 1   MATPFSSTTSVRSVFQPKQKPPPKALLSFRVDYNGWLNYAKCGSSTVHLCSWKSASNFLS 60
           MATPFSSTTS+RSVF+PKQ PPPKALLS R DYN  LN  KCGS+T  L SWKSASN++ 
Sbjct: 1   MATPFSSTTSLRSVFRPKQIPPPKALLSIR-DYNAGLNCIKCGSTTTPLSSWKSASNYIR 60

Query: 61  LKRYALVLSTQLFVSGNLLKNRLSYFFHFIYFLTVLVALCHHFAFGFVIALLLREVYCGG 120
           ++R+AL+L TQ F SGNL K                                        
Sbjct: 61  IRRHALMLPTQPFQSGNLSK---------------------------------------- 120

Query: 121 FSVVLTFFSPSFFLAMTIFRRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFNS 180
                             +RRGV+RAATIEEIEAEK LIEKDVRARMEKTIDTVRSSFNS
Sbjct: 121 ------------------YRRGVIRAATIEEIEAEKALIEKDVRARMEKTIDTVRSSFNS 180

Query: 181 IRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 240
           IRTGRANPAMLDKIEVEYYGSPV LKSIAQISTPDASSLL+QPYDKSSLKSIEKAIVNS+
Sbjct: 181 IRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSLKSIEKAIVNSN 218

Query: 241 LGLTPNNDGEVIRLTLPQLTSERRKVFSFAFANIFEQ 278
           LG+TPNNDGEVIRLTLPQLTSERRK  S   A   E+
Sbjct: 241 LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 218

[Close]

BLAST of Spg038190 vs. ExPASy TrEMBL
Match: A0A6J1ESQ7 (Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437377 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.3e-80
Identity = 179/277 (64.62%), Postives = 194/277 (70.04%), Query Frame = 0


Query: 1   MATPFSSTTSVRSVFQPKQKPPPKALLSFRVDYNGWLNYAKCGSSTVHLCSWKSASNFLS 60
           MATPFSSTTS+RSVF+PKQ PPPKALLS R DYN  LN  KCGS+T  L SWKSASN++ 
Sbjct: 1   MATPFSSTTSLRSVFRPKQIPPPKALLSIR-DYNAGLNCIKCGSTTTPLSSWKSASNYIR 60

Query: 61  LKRYALVLSTQLFVSGNLLKNRLSYFFHFIYFLTVLVALCHHFAFGFVIALLLREVYCGG 120
           ++R+AL+L TQ F SGNL K                                        
Sbjct: 61  IRRHALMLPTQPFQSGNLSK---------------------------------------- 120

Query: 121 FSVVLTFFSPSFFLAMTIFRRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFNS 180
                             +RRGV+RAATIEEIEAEK LIEKDVRARMEKTIDTVRSSFNS
Sbjct: 121 ------------------YRRGVIRAATIEEIEAEKALIEKDVRARMEKTIDTVRSSFNS 180

Query: 181 IRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 240
           IRTGRANPAMLDKIEVEYYGSPV LKSIAQISTPDASSLL+QPYDKSSLKSIEKAIVNS+
Sbjct: 181 IRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSLKSIEKAIVNSN 218

Query: 241 LGLTPNNDGEVIRLTLPQLTSERRKVFSFAFANIFEQ 278
           LG+TPNNDGEVIRLTLPQLTSERRK  S   A   E+
Sbjct: 241 LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 218

[Close]

BLAST of Spg038190 vs. ExPASy TrEMBL
Match: A0A6J1ETB9 (Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437377 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.3e-80
Identity = 179/277 (64.62%), Postives = 194/277 (70.04%), Query Frame = 0


Query: 1   MATPFSSTTSVRSVFQPKQKPPPKALLSFRVDYNGWLNYAKCGSSTVHLCSWKSASNFLS 60
           MATPFSSTTS+RSVF+PKQ PPPKALLS R DYN  LN  KCGS+T  L SWKSASN++ 
Sbjct: 1   MATPFSSTTSLRSVFRPKQIPPPKALLSIR-DYNAGLNCIKCGSTTTPLSSWKSASNYIR 60

Query: 61  LKRYALVLSTQLFVSGNLLKNRLSYFFHFIYFLTVLVALCHHFAFGFVIALLLREVYCGG 120
           ++R+AL+L TQ F SGNL K                                        
Sbjct: 61  IRRHALMLPTQPFQSGNLSK---------------------------------------- 120

Query: 121 FSVVLTFFSPSFFLAMTIFRRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFNS 180
                             +RRGV+RAATIEEIEAEK LIEKDVRARMEKTIDTVRSSFNS
Sbjct: 121 ------------------YRRGVIRAATIEEIEAEKALIEKDVRARMEKTIDTVRSSFNS 180

Query: 181 IRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSD 240
           IRTGRANPAMLDKIEVEYYGSPV LKSIAQISTPDASSLL+QPYDKSSLKSIEKAIVNS+
Sbjct: 181 IRTGRANPAMLDKIEVEYYGSPVGLKSIAQISTPDASSLLIQPYDKSSLKSIEKAIVNSN 218

Query: 241 LGLTPNNDGEVIRLTLPQLTSERRKVFSFAFANIFEQ 278
           LG+TPNNDGEVIRLTLPQLTSERRK  S   A   E+
Sbjct: 241 LGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 218

[Close]

BLAST of Spg038190 vs. ExPASy TrEMBL
Match: A0A1S3BMN4 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491322 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 6.2e-80
Identity = 182/278 (65.47%), Postives = 195/278 (70.14%), Query Frame = 0


Query: 1   MATPFSSTTSV-RSVFQPKQKPPPKALLSFRVDYNGWLNYAKCGSSTVHLCSWKSASNFL 60
           MATPFS+TTS+ RS+F     PPPK LLS R DYNG LN  KCGSS+ HLCSWKSASN++
Sbjct: 1   MATPFSATTSIRRSLF---HNPPPKPLLSLR-DYNGGLNCVKCGSSSAHLCSWKSASNYV 60

Query: 61  SLKRYALVLSTQLFVSGNLLKNRLSYFFHFIYFLTVLVALCHHFAFGFVIALLLREVYCG 120
            L + AL+LSTQL VSGN+LKN                                      
Sbjct: 61  RLNQRALLLSTQLSVSGNVLKN-------------------------------------- 120

Query: 121 GFSVVLTFFSPSFFLAMTIFRRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFN 180
                               RRGVVRAATIEEIEAEKTLIEKDV+ARMEKTIDTVRS+FN
Sbjct: 121 --------------------RRGVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNFN 180

Query: 181 SIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS 240
           SIRTGR+NPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS
Sbjct: 181 SIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNS 216

Query: 241 DLGLTPNNDGEVIRLTLPQLTSERRKVFSFAFANIFEQ 278
           DLGLTPNNDGEVIRLTLPQLTSERRK  S   A   E+
Sbjct: 241 DLGLTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 216

[Close]

BLAST of Spg038190 vs. TAIR 10
Match: AT3G63190.1 (ribosome recycling factor, chloroplast precursor )

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-52
Identity = 106/138 (76.81%), Postives = 124/138 (89.86%), Query Frame = 0


Query: 140 RRGVVRAATIEEIEAEKTLIEKDVRARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYY 199
           +R V+R+ATIEEIEAEK+ IE DV+++MEKTI+T+R+SFNSIRTGR+N AMLDKIEVEYY
Sbjct: 76  KRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYY 135

Query: 200 GSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQL 259
           GSPVSLKSIAQISTPD SSLL+QPYDKSSLK+IEKAIVNSDLG+TPNNDG+VIRL+LP L
Sbjct: 136 GSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPL 195

Query: 260 TSERRKVFSFAFANIFEQ 278
           TS+RRK  S   A   E+
Sbjct: 196 TSDRRKELSKVVAKQSEE 213

[Close]

BLAST of Spg038190 vs. TAIR 10
Match: AT3G01800.1 (Ribosome recycling factor )

HSP 1 Score: 80.5 bits (197), Expect = 2.4e-15
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 165 ARMEKTIDTVRSSFNSIRTGRANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPY 224
           ++ME  ID +      +RTGRA P MLD I VE  G  + L  +A +S  D  +L V PY
Sbjct: 95  SQMEAAIDALSRDLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPY 154

Query: 225 DKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSE 263
           D  ++K +EKAIV S LGL P  DG+ +  ++P LT E
Sbjct: 155 DPDTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKE 192

The following BLAST results are available for this feature:

BLAST of Spg038190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888223.1	3.0e-84	68.71	ribosome-recycling factor, chloroplastic isoform X1 [Benincasa hispida]	[more]
XP_038888224.1	1.9e-83	68.35	ribosome-recycling factor, chloroplastic isoform X2 [Benincasa hispida]	[more]
XP_023533411.1	4.7e-82	65.34	ribosome-recycling factor, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022995869.1	2.6e-80	64.26	ribosome-recycling factor, chloroplastic isoform X1 [Cucurbita maxima]	[more]
XP_022931084.1	2.6e-80	64.62	ribosome-recycling factor, chloroplastic isoform X1 [Cucurbita moschata]	[more]

BLAST of Spg038190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1X0	1.5e-51	76.81	Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RRF ...	[more]
P37706	5.5e-49	72.46	Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota OX=4039 GN=...	[more]
P82231	6.1e-48	69.57	Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea OX=3562 GN=RRF PE=...	[more]
A2YMU2	8.7e-47	68.12	Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica OX=39946 ...	[more]
A3BLC3	8.7e-47	68.12	Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of Spg038190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K744	1.3e-80	64.26	Ribosome-recycling factor, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1ESI6	1.3e-80	64.62	Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1ESQ7	1.3e-80	64.62	Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1ETB9	1.3e-80	64.62	Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A1S3BMN4	6.2e-80	65.47	Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491322...	[more]

BLAST of Spg038190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63190.1	1.1e-52	76.81	ribosome recycling factor, chloroplast precursor	[more]
AT3G01800.1	2.4e-15	43.88	Ribosome recycling factor	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036191	RRF superfamily	GENE3D	1.10.132.20		coord: 166..270 e-value: 8.0E-42 score: 144.6
IPR036191	RRF superfamily	SUPERFAMILY	55194	Ribosome recycling factor, RRF	coord: 159..267
IPR023584	Ribosome recycling factor domain	PFAM	PF01765	RRF	coord: 176..275 e-value: 3.8E-35 score: 121.2
None	No IPR available	GENE3D	3.30.1360.40		coord: 185..259 e-value: 8.0E-42 score: 144.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR20982:SF3	MITOCHONDRIAL RIBOSOME RECYCLING FACTOR	coord: 82..276
IPR002661	Ribosome recycling factor	PANTHER	PTHR20982	RIBOSOME RECYCLING FACTOR	coord: 82..276
IPR002661	Ribosome recycling factor	CDD	cd00520	RRF	coord: 159..265 e-value: 5.29576E-52 score: 166.281

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg038190.1	Spg038190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032544	plastid translation
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0043023	ribosomal large subunit binding