Spg038163 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg038163
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Basic helix-loop-helix protein
Location	scaffold12: 43272674 .. 43274623 (-)
RNA-Seq Expression	Spg038163
Synteny	Spg038163

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTTTGGGGAGATGGATTCTACAATGGACCCATCAAGACCACCAAGACGCTGCACCCCGCCGCCACCCATCTCACCGCCCAACAACAACAACCACCCTCTCGAACCCATCAGCTCAGGGATCTCTACAACTCCTTATCCGCCGCCGACACAGACACTACCCTCCGCCGCCCCTCCGCCGCTCTCTCTCCGGAGGACTTGACGGAGTCCGAGTGGTTCTATTTGTTGTGTCTCTCCTTCTCTTTTCCTCCGGGCCGAGGGTACTTTCATTCATTTTCTAATCCCTAATTAACCATATATATATATTATGGATACCCATTTATTTTATTAATTTGAGTCATTTTCATTTTCATACAGATTGCCTGGAAACGCATTTGCCAACAACACACATGTGTGGATTACAGGCGCAAATGACATTGACACCAAAATTTTCTCCAGAGCTATTCTTGCTAAGGTATATATATATATCTTATCATATCTCACTATATTTCCACTTACACTTTCACCACATCATTCCCCTTTAAACTCTTCTTTTATTCCATCCACAAAATATAATATAGTTCATTCATCTAATCAATTTTTATACATCAACTACTATGTCAATTTCTATGAATGATGTAAATGATGTCACATATGTCTTTCAATTTTCTTTCTTTTTTTTTTTTTTGAATAATTTCAATGTTGATAGGTTAAAATAAAACTTTTCAAAACCTAAAAAGTACATAATTGAAAATTTCCTCAAAGTTTAGAAGTATTTTGTATAACGGTTTAAATTTTATTTGTATCTTTGAATTTTCAAATTTGTTCTCAAAATATCCATTTTGGTTCTTGAACTTTTAAGAGGTTTATTTTAGTCTCTAAACCTTTAAAAAATAACTATTTATAGGTCTTTACCTTTATTTTGATTTGAACGAATTAATGACATAGCTTGAGAATGTGTACTAGTAAATATAGCTTTATAAGTATGTGTACTAGCATGTTAACATAAGCACAATTTCAAGTCTCATAGGTTAGAGATGAACATAGGACACGCTAATATATTAGATGGAAAAATAGTACAACAAAGATCAAAATGGTGAAAATAAGATTCGAGCCTGTGTAATTTAATCTTAGTTGTAATTAATGTGAAGCAATTTACTTTTCTCCATCCATCTCCTGCACATATACTTTTATGAACAATTGAAATTATATTGTGTCACAGCATTTGATGGCTTTTTAATTAATATTTTGCTGTTGGTTAATGGTTTGGCGGCAATATGGCATGGGATTCCTCTTGATTTGTTCATCAGAGTGCTCGCATAAAGGTAAAACCCCATCAATAATTTATTTATGAAATAAATTGGGTTTTGCAATTAATTAATTAATATGCATAAACAAAGTTACGTTGTCTGAAGAAATAATCTCATGCAGACAGTGGTTTGCATTCCTCTTATGGATGGTGTGGTTGAACTAGGCACCACAGATAAGGTAATAATATAATTAACTCTCGTTGCTTAATTACTAATTTATTTCGGTTAATTACCAGCTTCATCAAAACGATTTCAAATGTCAATAATAGATCGCACTTGATTCACTGTTACTCATCTAATCTTAGGATACGCCATAGATTAGATTACAACTTCATTTCGTCATTCCACTTTATTAGACTTGTTGATATAATTAATATAGTCGCCCATGGTATATATTTCCAAATTAAAGTAAACATATATATACATGTTTCTGTTATAGCACCATGTCTTTGTATTGTAGGTGATAGAGAATGAATTTGTTTTAGTTGAGCTCAAAAGGTGTATGAAATAATGTACGTTAAATGTTTCAGGTTAAAGAAGACATTGGATTCATCCAACACATCAAATCCATATTCGCAGAAACCCAGTCGGCAGCACAAAAACCAGCACTCTCGGAGCTCTCGACATCGAATTCTGCCACTTCATTGGAGCATTATAA

mRNA sequence

ATGTTGGTTTGGGGAGATGGATTCTACAATGGACCCATCAAGACCACCAAGACGCTGCACCCCGCCGCCACCCATCTCACCGCCCAACAACAACAACCACCCTCTCGAACCCATCAGCTCAGGGATCTCTACAACTCCTTATCCGCCGCCGACACAGACACTACCCTCCGCCGCCCCTCCGCCGCTCTCTCTCCGGAGGACTTGACGGAGTCCGAGTGGTTCTATTTGTTGTGTCTCTCCTTCTCTTTTCCTCCGGGCCGAGGATTGCCTGGAAACGCATTTGCCAACAACACACATGTGTGGATTACAGGCGCAAATGACATTGACACCAAAATTTTCTCCAGAGCTATTCTTGCTAAGAGTGCTCGCATAAAGACAGTGGTTTGCATTCCTCTTATGGATGGTGTGGTTGAACTAGGCACCACAGATAAGGTGATAGAGAATGAATTTGTTTTAGTTGAGCTCAAAAGAAACCCAGTCGGCAGCACAAAAACCAGCACTCTCGGAGCTCTCGACATCGAATTCTGCCACTTCATTGGAGCATTATAA

Coding sequence (CDS)

ATGTTGGTTTGGGGAGATGGATTCTACAATGGACCCATCAAGACCACCAAGACGCTGCACCCCGCCGCCACCCATCTCACCGCCCAACAACAACAACCACCCTCTCGAACCCATCAGCTCAGGGATCTCTACAACTCCTTATCCGCCGCCGACACAGACACTACCCTCCGCCGCCCCTCCGCCGCTCTCTCTCCGGAGGACTTGACGGAGTCCGAGTGGTTCTATTTGTTGTGTCTCTCCTTCTCTTTTCCTCCGGGCCGAGGATTGCCTGGAAACGCATTTGCCAACAACACACATGTGTGGATTACAGGCGCAAATGACATTGACACCAAAATTTTCTCCAGAGCTATTCTTGCTAAGAGTGCTCGCATAAAGACAGTGGTTTGCATTCCTCTTATGGATGGTGTGGTTGAACTAGGCACCACAGATAAGGTGATAGAGAATGAATTTGTTTTAGTTGAGCTCAAAAGAAACCCAGTCGGCAGCACAAAAACCAGCACTCTCGGAGCTCTCGACATCGAATTCTGCCACTTCATTGGAGCATTATAA

Protein sequence

MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPSRTHQLRDLYNSLSAADTDTTLRRPSAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTKIFSRAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELKRNPVGSTKTSTLGALDIEFCHFIGAL

Homology

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BLAST of Spg038163 vs. NCBI nr
Match: XP_022995859.1 (basic helix-loop-helix protein A [Cucurbita maxima])

HSP 1 Score: 240.4 bits (612), Expect = 1.3e-59
Identity = 128/173 (73.99%), Postives = 137/173 (79.19%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAAT------HLTAQQQQ--------PPSRTHQLRDLYNS 60
           +LVWGDGFYNGPIKTTKTLHPAA       H   QQQQ           RTHQLRDLYNS
Sbjct: 28  VLVWGDGFYNGPIKTTKTLHPAAATDFTGHHQQLQQQQLQLQAASLSLQRTHQLRDLYNS 87

Query: 61  LSAADTDT---TLRRPSAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWIT 120
           LSAAD+ T    LRRPSAALSPEDLTESEWFYLLCLSFSFPPG GLPG AFA N HVWIT
Sbjct: 88  LSAADSSTHAHPLRRPSAALSPEDLTESEWFYLLCLSFSFPPGLGLPGKAFAKNKHVWIT 147

Query: 121 GANDIDTKIFSRAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELK 157
           GAN+ID+KIFSRAILAKSA IKTVVCIP+MDGVVELGTTDKV E+  ++  +K
Sbjct: 148 GANEIDSKIFSRAILAKSAGIKTVVCIPVMDGVVELGTTDKVNEDIALVQHMK 200

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BLAST of Spg038163 vs. NCBI nr
Match: XP_023533988.1 (basic helix-loop-helix protein A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-59
Identity = 128/175 (73.14%), Postives = 137/175 (78.29%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAAT------HLTAQQQQ----------PPSRTHQLRDLY 60
           +LVWGDGFYNGPIKTTKTLHPAA       H   QQQQ             RTHQLRDLY
Sbjct: 32  VLVWGDGFYNGPIKTTKTLHPAAATDFTGHHQQQQQQQLQLQLQAASLSLQRTHQLRDLY 91

Query: 61  NSLSAADTDT---TLRRPSAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVW 120
           NSLSAAD+ T    LRRPSAALSPEDLTESEWFYLLCLSFSFPPG GLPG AFA N HVW
Sbjct: 92  NSLSAADSSTHTHPLRRPSAALSPEDLTESEWFYLLCLSFSFPPGLGLPGKAFAKNKHVW 151

Query: 121 ITGANDIDTKIFSRAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELK 157
           ITGAN+ID+KIFSRAILAKSA IKTVVCIP+MDGVVELGTTDKV E+  ++  +K
Sbjct: 152 ITGANEIDSKIFSRAILAKSAGIKTVVCIPVMDGVVELGTTDKVNEDIALVQHMK 206

[Close]

BLAST of Spg038163 vs. NCBI nr
Match: XP_022931082.1 (basic helix-loop-helix protein A [Cucurbita moschata])

HSP 1 Score: 238.8 bits (608), Expect = 3.7e-59
Identity = 127/175 (72.57%), Postives = 136/175 (77.71%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHP-AATHLTAQQQQPP---------------SRTHQLRDLY 60
           +LVWGDGFYNGPIKTTKTLHP AAT  T  QQQ                  RTHQLRDLY
Sbjct: 32  VLVWGDGFYNGPIKTTKTLHPAAATDFTGHQQQQQQQQLQLQLQAASLSLQRTHQLRDLY 91

Query: 61  NSLSAADTDT---TLRRPSAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVW 120
           NSLSAAD+ T    LRRPSAALSPEDLTESEWFYLLC SFSFPPG GLPG AFA N HVW
Sbjct: 92  NSLSAADSSTHTHPLRRPSAALSPEDLTESEWFYLLCFSFSFPPGLGLPGKAFAKNKHVW 151

Query: 121 ITGANDIDTKIFSRAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELK 157
           ITGAN+ID+KIFSRAILAKSA IKTVVCIP+MDGVVELGTTDKV E+  ++  +K
Sbjct: 152 ITGANEIDSKIFSRAILAKSAGIKTVVCIPVMDGVVELGTTDKVNEDIALVQHMK 206

[Close]

BLAST of Spg038163 vs. NCBI nr
Match: XP_008449448.1 (PREDICTED: basic helix-loop-helix protein A isoform X1 [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 3.8e-56
Identity = 121/163 (74.23%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPS------RTHQLRDLYNSLSAADTDT 60
           MLVWGDGFYNGPIKTTKTLHPAA      QQ   S      RTHQL DLYNSLSA+D   
Sbjct: 28  MLVWGDGFYNGPIKTTKTLHPAAAAQQQHQQHQHSASLSLHRTHQLTDLYNSLSASD--- 87

Query: 61  TLRRP-SAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTKIF 120
           TLRRP SAALSPEDLTE+EWFYLLCLSFSFPPG GLPG A+    HVWITGAN+ID+KIF
Sbjct: 88  TLRRPTSAALSPEDLTETEWFYLLCLSFSFPPGFGLPGKAYCKKKHVWITGANEIDSKIF 147

Query: 121 SRAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELK 157
           SRAILAKSA IKTVVCIPLMDGVVELG+TDKV E+   +  +K
Sbjct: 148 SRAILAKSAGIKTVVCIPLMDGVVELGSTDKVKEDMAFIQHIK 187

[Close]

BLAST of Spg038163 vs. NCBI nr
Match: XP_004140222.2 (transcription factor BHLH42 [Cucumis sativus] >KGN48164.2 hypothetical protein Csa_003786 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 4.9e-56
Identity = 120/162 (74.07%), Postives = 131/162 (80.86%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPS-----RTHQLRDLYNSLSAADTDTT 60
           MLVWGDGFYNGPIKTTKTLHPAA     QQ Q  +     RTHQL DLYNSLSA+D   T
Sbjct: 28  MLVWGDGFYNGPIKTTKTLHPAAAAQQQQQHQHSASLSLHRTHQLTDLYNSLSASD---T 87

Query: 61  LRRP-SAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTKIFS 120
           LRRP SAALSPEDLTE+EWFYLLCLSFSFPPG GLPG A+    HVWITGAN+I++KIFS
Sbjct: 88  LRRPTSAALSPEDLTETEWFYLLCLSFSFPPGFGLPGKAYCKKKHVWITGANEIESKIFS 147

Query: 121 RAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELK 157
           RAILAKSA IKTVVCIPLMDGVVELG+TDKV E+   +  +K
Sbjct: 148 RAILAKSAGIKTVVCIPLMDGVVELGSTDKVKEDMAFIQHIK 186

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BLAST of Spg038163 vs. ExPASy Swiss-Prot
Match: E3SXU5 (Truncated basic helix-loop-helix protein A OS=Pisum sativum OX=3888 GN=BHLH PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.8e-51
Identity = 96/148 (64.86%), Postives = 119/148 (80.41%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPSRTHQLRDLYNSLSAADTDTTLRRPS 60
           +LVWGDG+YNG IKT KT+ P      + ++    R+ QLR+LY SLSA +T+   RRP 
Sbjct: 40  ILVWGDGYYNGAIKTRKTVQPME---VSAEEASLQRSQQLRELYESLSAGETNPPTRRPC 99

Query: 61  AALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTKIFSRAILAK 120
           A+LSPEDLTESEWFYL+C+SFSFPPG GLPG A+A   HVW+TGAN++D+K FSRAILAK
Sbjct: 100 ASLSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAK 159

Query: 121 SARIKTVVCIPLMDGVVELGTTDKVIEN 149
           SA I+TVVCIP++DGVVE+GTTDKV E+
Sbjct: 160 SANIQTVVCIPVLDGVVEIGTTDKVQED 184

[Close]

BLAST of Spg038163 vs. ExPASy Swiss-Prot
Match: E3SXU4 (Basic helix-loop-helix protein A OS=Pisum sativum OX=3888 GN=BHLH PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.0e-51
Identity = 95/148 (64.19%), Postives = 119/148 (80.41%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPSRTHQLRDLYNSLSAADTDTTLRRPS 60
           +LVWGDG+YNG IKT KT+ P      + ++    R+ QLR+LY SLSA +T+   RRP 
Sbjct: 40  ILVWGDGYYNGAIKTRKTVQPME---VSAEEASLQRSQQLRELYESLSAGETNPPTRRPC 99

Query: 61  AALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTKIFSRAILAK 120
           A+LSPEDLTESEWFYL+C+SFSFPPG GLPG A+A   HVW+TGAN++D+K FSRAILAK
Sbjct: 100 ASLSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAK 159

Query: 121 SARIKTVVCIPLMDGVVELGTTDKVIEN 149
           SA I+TVVCIP++DGVVE+GTTDK+ E+
Sbjct: 160 SANIQTVVCIPVLDGVVEIGTTDKIQED 184

[Close]

BLAST of Spg038163 vs. ExPASy Swiss-Prot
Match: A0A2R6QE26 (Transcription factor BHLH42 OS=Actinidia chinensis var. chinensis OX=1590841 GN=BHLH42 PE=1 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.5e-51
Identity = 95/148 (64.19%), Postives = 121/148 (81.76%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPSRTHQLRDLYNSLSAADTDTTLRRPS 60
           +LVWGDG+YNG IKT KT+ P      + ++    R+ QLR+LY+SLSA +++   RRP 
Sbjct: 36  ILVWGDGYYNGAIKTRKTVLPIE---VSAEEASLQRSQQLRELYDSLSAGESNQQTRRPC 95

Query: 61  AALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTKIFSRAILAK 120
           AALSPEDLTESEWFYL+C+SFSFPPG GLPG A+A   HVW+TGAN++D+K+FSRAILAK
Sbjct: 96  AALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYAKRQHVWLTGANEVDSKVFSRAILAK 155

Query: 121 SARIKTVVCIPLMDGVVELGTTDKVIEN 149
           SAR++TVVCIPL+DGVVELG T++V E+
Sbjct: 156 SARVQTVVCIPLLDGVVELGNTERVQED 180

[Close]

BLAST of Spg038163 vs. ExPASy Swiss-Prot
Match: Q9FT81 (Transcription factor TT8 OS=Arabidopsis thaliana OX=3702 GN=TT8 PE=1 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 3.1e-45
Identity = 93/152 (61.18%), Postives = 120/152 (78.95%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPSRTHQLRDLYNSLSAADTDTTLRRPS 60
           +LVWG+G+YNG IKT KT  PA   +TA ++    R+ QLR+LY +L A ++ T+  R  
Sbjct: 47  VLVWGNGYYNGAIKTRKTTQPA--EVTA-EEAALERSQQLRELYETLLAGES-TSEARAC 106

Query: 61  AALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTKIFSRAILAK 120
            ALSPEDLTE+EWFYL+C+SFSFPP  G+PG A+A   HVW++GAN++D+K FSRAILAK
Sbjct: 107 TALSPEDLTETEWFYLMCVSFSFPPPSGMPGKAYARRKHVWLSGANEVDSKTFSRAILAK 166

Query: 121 SARIKTVVCIPLMDGVVELGTTDKVIEN-EFV 152
           SA+I+TVVCIP++DGVVELGTT KV E+ EFV
Sbjct: 167 SAKIQTVVCIPMLDGVVELGTTKKVREDVEFV 194

[Close]

BLAST of Spg038163 vs. ExPASy Swiss-Prot
Match: Q9FN69 (Transcription factor GLABRA 3 OS=Arabidopsis thaliana OX=3702 GN=GL3 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.0e-36
Identity = 84/181 (46.41%), Postives = 113/181 (62.43%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPSRTHQLRDLYNSLS---------AAD 60
           +L WGDG+YNG IKT KT+   A+ + A  Q    R+ QL +LY SLS         AA 
Sbjct: 42  VLEWGDGYYNGDIKTRKTIQ--ASEIKA-DQLGLRRSEQLSELYESLSVAESSSSGVAAG 101

Query: 61  TDTTLRRPSAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTK 120
           +  T R  +AALSPEDL ++EW+YL+C+SF F  G G+PG  FAN   +W+  A+  D+K
Sbjct: 102 SQVTRRASAAALSPEDLADTEWYYLVCMSFVFNIGEGMPGRTFANGEPIWLCNAHTADSK 161

Query: 121 IFSRAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELKRNPVGSTKTSTLGAL 173
           +FSR++LAKSA +KTVVC P + GVVE+GTT+ + E+         N +   KTS L A 
Sbjct: 162 VFSRSLLAKSAAVKTVVCFPFLGGVVEIGTTEHITED--------MNVIQCVKTSFLEAP 211

[Close]

BLAST of Spg038163 vs. ExPASy TrEMBL
Match: A0A6J1K736 (basic helix-loop-helix protein A OS=Cucurbita maxima OX=3661 GN=LOC111491262 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 6.1e-60
Identity = 128/173 (73.99%), Postives = 137/173 (79.19%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAAT------HLTAQQQQ--------PPSRTHQLRDLYNS 60
           +LVWGDGFYNGPIKTTKTLHPAA       H   QQQQ           RTHQLRDLYNS
Sbjct: 28  VLVWGDGFYNGPIKTTKTLHPAAATDFTGHHQQLQQQQLQLQAASLSLQRTHQLRDLYNS 87

Query: 61  LSAADTDT---TLRRPSAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWIT 120
           LSAAD+ T    LRRPSAALSPEDLTESEWFYLLCLSFSFPPG GLPG AFA N HVWIT
Sbjct: 88  LSAADSSTHAHPLRRPSAALSPEDLTESEWFYLLCLSFSFPPGLGLPGKAFAKNKHVWIT 147

Query: 121 GANDIDTKIFSRAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELK 157
           GAN+ID+KIFSRAILAKSA IKTVVCIP+MDGVVELGTTDKV E+  ++  +K
Sbjct: 148 GANEIDSKIFSRAILAKSAGIKTVVCIPVMDGVVELGTTDKVNEDIALVQHMK 200

[Close]

BLAST of Spg038163 vs. ExPASy TrEMBL
Match: A0A6J1ESI2 (basic helix-loop-helix protein A OS=Cucurbita moschata OX=3662 GN=LOC111437375 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.8e-59
Identity = 127/175 (72.57%), Postives = 136/175 (77.71%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHP-AATHLTAQQQQPP---------------SRTHQLRDLY 60
           +LVWGDGFYNGPIKTTKTLHP AAT  T  QQQ                  RTHQLRDLY
Sbjct: 32  VLVWGDGFYNGPIKTTKTLHPAAATDFTGHQQQQQQQQLQLQLQAASLSLQRTHQLRDLY 91

Query: 61  NSLSAADTDT---TLRRPSAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVW 120
           NSLSAAD+ T    LRRPSAALSPEDLTESEWFYLLC SFSFPPG GLPG AFA N HVW
Sbjct: 92  NSLSAADSSTHTHPLRRPSAALSPEDLTESEWFYLLCFSFSFPPGLGLPGKAFAKNKHVW 151

Query: 121 ITGANDIDTKIFSRAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELK 157
           ITGAN+ID+KIFSRAILAKSA IKTVVCIP+MDGVVELGTTDKV E+  ++  +K
Sbjct: 152 ITGANEIDSKIFSRAILAKSAGIKTVVCIPVMDGVVELGTTDKVNEDIALVQHMK 206

[Close]

BLAST of Spg038163 vs. ExPASy TrEMBL
Match: A0A1S3BLF6 (basic helix-loop-helix protein A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491332 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.8e-56
Identity = 121/163 (74.23%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPS------RTHQLRDLYNSLSAADTDT 60
           MLVWGDGFYNGPIKTTKTLHPAA      QQ   S      RTHQL DLYNSLSA+D   
Sbjct: 28  MLVWGDGFYNGPIKTTKTLHPAAAAQQQHQQHQHSASLSLHRTHQLTDLYNSLSASD--- 87

Query: 61  TLRRP-SAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTKIF 120
           TLRRP SAALSPEDLTE+EWFYLLCLSFSFPPG GLPG A+    HVWITGAN+ID+KIF
Sbjct: 88  TLRRPTSAALSPEDLTETEWFYLLCLSFSFPPGFGLPGKAYCKKKHVWITGANEIDSKIF 147

Query: 121 SRAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELK 157
           SRAILAKSA IKTVVCIPLMDGVVELG+TDKV E+   +  +K
Sbjct: 148 SRAILAKSAGIKTVVCIPLMDGVVELGSTDKVKEDMAFIQHIK 187

[Close]

BLAST of Spg038163 vs. ExPASy TrEMBL
Match: A0A5A7UUX4 (Basic helix-loop-helix protein A isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G001430 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 7.2e-53
Identity = 117/163 (71.78%), Postives = 126/163 (77.30%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPS------RTHQLRDLYNSLSAADTDT 60
           MLVWGDGFYNGPIKTTKTLHPAA      QQ   S      RTHQL DLYNSLSA+D   
Sbjct: 28  MLVWGDGFYNGPIKTTKTLHPAAAAQQQHQQHQHSASLSLHRTHQLTDLYNSLSASD--- 87

Query: 61  TLRRP-SAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTKIF 120
           TLRRP SAALSPEDLTE+EWFYLLCLSFSFPPG GLPG A+    HVWITGAN+ID+KIF
Sbjct: 88  TLRRPTSAALSPEDLTETEWFYLLCLSFSFPPGFGLPGKAYCKKKHVWITGANEIDSKIF 147

Query: 121 SRAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELK 157
           SRAILA     KTVVCIPLMDGVVELG+TDKV E+   +  +K
Sbjct: 148 SRAILA-----KTVVCIPLMDGVVELGSTDKVKEDMAFIQHIK 182

[Close]

BLAST of Spg038163 vs. ExPASy TrEMBL
Match: A0A1S3BM28 (basic helix-loop-helix protein A isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491332 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 7.2e-53
Identity = 117/163 (71.78%), Postives = 126/163 (77.30%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPS------RTHQLRDLYNSLSAADTDT 60
           MLVWGDGFYNGPIKTTKTLHPAA      QQ   S      RTHQL DLYNSLSA+D   
Sbjct: 28  MLVWGDGFYNGPIKTTKTLHPAAAAQQQHQQHQHSASLSLHRTHQLTDLYNSLSASD--- 87

Query: 61  TLRRP-SAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTKIF 120
           TLRRP SAALSPEDLTE+EWFYLLCLSFSFPPG GLPG A+    HVWITGAN+ID+KIF
Sbjct: 88  TLRRPTSAALSPEDLTETEWFYLLCLSFSFPPGFGLPGKAYCKKKHVWITGANEIDSKIF 147

Query: 121 SRAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELK 157
           SRAILA     KTVVCIPLMDGVVELG+TDKV E+   +  +K
Sbjct: 148 SRAILA-----KTVVCIPLMDGVVELGSTDKVKEDMAFIQHIK 182

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BLAST of Spg038163 vs. TAIR 10
Match: AT4G09820.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 183.0 bits (463), Expect = 2.2e-46
Identity = 93/152 (61.18%), Postives = 120/152 (78.95%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPSRTHQLRDLYNSLSAADTDTTLRRPS 60
           +LVWG+G+YNG IKT KT  PA   +TA ++    R+ QLR+LY +L A ++ T+  R  
Sbjct: 47  VLVWGNGYYNGAIKTRKTTQPA--EVTA-EEAALERSQQLRELYETLLAGES-TSEARAC 106

Query: 61  AALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTKIFSRAILAK 120
            ALSPEDLTE+EWFYL+C+SFSFPP  G+PG A+A   HVW++GAN++D+K FSRAILAK
Sbjct: 107 TALSPEDLTETEWFYLMCVSFSFPPPSGMPGKAYARRKHVWLSGANEVDSKTFSRAILAK 166

Query: 121 SARIKTVVCIPLMDGVVELGTTDKVIEN-EFV 152
           SA+I+TVVCIP++DGVVELGTT KV E+ EFV
Sbjct: 167 SAKIQTVVCIPMLDGVVELGTTKKVREDVEFV 194

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BLAST of Spg038163 vs. TAIR 10
Match: AT5G41315.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-37
Identity = 84/181 (46.41%), Postives = 113/181 (62.43%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPSRTHQLRDLYNSLS---------AAD 60
           +L WGDG+YNG IKT KT+   A+ + A  Q    R+ QL +LY SLS         AA 
Sbjct: 42  VLEWGDGYYNGDIKTRKTIQ--ASEIKA-DQLGLRRSEQLSELYESLSVAESSSSGVAAG 101

Query: 61  TDTTLRRPSAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTK 120
           +  T R  +AALSPEDL ++EW+YL+C+SF F  G G+PG  FAN   +W+  A+  D+K
Sbjct: 102 SQVTRRASAAALSPEDLADTEWYYLVCMSFVFNIGEGMPGRTFANGEPIWLCNAHTADSK 161

Query: 121 IFSRAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELKRNPVGSTKTSTLGAL 173
           +FSR++LAKSA +KTVVC P + GVVE+GTT+ + E+         N +   KTS L A 
Sbjct: 162 VFSRSLLAKSAAVKTVVCFPFLGGVVEIGTTEHITED--------MNVIQCVKTSFLEAP 211

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BLAST of Spg038163 vs. TAIR 10
Match: AT1G63650.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 152.1 bits (383), Expect = 4.2e-37
Identity = 75/162 (46.30%), Postives = 108/162 (66.67%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPSRTHQLRDLYNSLSAAD------TDT 60
           +L WGDG+YNG IKT KT+  A   +    Q    R+ QLR+LY SLS A+      +  
Sbjct: 41  VLEWGDGYYNGDIKTRKTIQAAEVKI---DQLGLERSEQLRELYESLSLAESSASGSSQV 100

Query: 61  TLRRPSAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTKIFS 120
           T R  +AALSPEDLT++EW+YL+C+SF F  G G+PG A +N   +W+  A   D+K+F+
Sbjct: 101 TRRASAAALSPEDLTDTEWYYLVCMSFVFNIGEGIPGGALSNGEPIWLCNAETADSKVFT 160

Query: 121 RAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELK 157
           R++LAKSA ++TVVC P + GV+E+GTT+ + E+  V+  +K
Sbjct: 161 RSLLAKSASLQTVVCFPFLGGVLEIGTTEHIKEDMNVIQSVK 199

[Close]

BLAST of Spg038163 vs. TAIR 10
Match: AT1G63650.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 152.1 bits (383), Expect = 4.2e-37
Identity = 75/162 (46.30%), Postives = 108/162 (66.67%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPSRTHQLRDLYNSLSAAD------TDT 60
           +L WGDG+YNG IKT KT+  A   +    Q    R+ QLR+LY SLS A+      +  
Sbjct: 41  VLEWGDGYYNGDIKTRKTIQAAEVKI---DQLGLERSEQLRELYESLSLAESSASGSSQV 100

Query: 61  TLRRPSAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTKIFS 120
           T R  +AALSPEDLT++EW+YL+C+SF F  G G+PG A +N   +W+  A   D+K+F+
Sbjct: 101 TRRASAAALSPEDLTDTEWYYLVCMSFVFNIGEGIPGGALSNGEPIWLCNAETADSKVFT 160

Query: 121 RAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELK 157
           R++LAKSA ++TVVC P + GV+E+GTT+ + E+  V+  +K
Sbjct: 161 RSLLAKSASLQTVVCFPFLGGVLEIGTTEHIKEDMNVIQSVK 199

[Close]

BLAST of Spg038163 vs. TAIR 10
Match: AT1G63650.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 152.1 bits (383), Expect = 4.2e-37
Identity = 75/162 (46.30%), Postives = 108/162 (66.67%), Query Frame = 0


Query: 1   MLVWGDGFYNGPIKTTKTLHPAATHLTAQQQQPPSRTHQLRDLYNSLSAAD------TDT 60
           +L WGDG+YNG IKT KT+  A   +    Q    R+ QLR+LY SLS A+      +  
Sbjct: 41  VLEWGDGYYNGDIKTRKTIQAAEVKI---DQLGLERSEQLRELYESLSLAESSASGSSQV 100

Query: 61  TLRRPSAALSPEDLTESEWFYLLCLSFSFPPGRGLPGNAFANNTHVWITGANDIDTKIFS 120
           T R  +AALSPEDLT++EW+YL+C+SF F  G G+PG A +N   +W+  A   D+K+F+
Sbjct: 101 TRRASAAALSPEDLTDTEWYYLVCMSFVFNIGEGIPGGALSNGEPIWLCNAETADSKVFT 160

Query: 121 RAILAKSARIKTVVCIPLMDGVVELGTTDKVIENEFVLVELK 157
           R++LAKSA ++TVVC P + GV+E+GTT+ + E+  V+  +K
Sbjct: 161 RSLLAKSASLQTVVCFPFLGGVLEIGTTEHIKEDMNVIQSVK 199

The following BLAST results are available for this feature:

BLAST of Spg038163 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022995859.1	1.3e-59	73.99	basic helix-loop-helix protein A [Cucurbita maxima]	[more]
XP_023533988.1	2.1e-59	73.14	basic helix-loop-helix protein A [Cucurbita pepo subsp. pepo]	[more]
XP_022931082.1	3.7e-59	72.57	basic helix-loop-helix protein A [Cucurbita moschata]	[more]
XP_008449448.1	3.8e-56	74.23	PREDICTED: basic helix-loop-helix protein A isoform X1 [Cucumis melo]	[more]
XP_004140222.2	4.9e-56	74.07	transcription factor BHLH42 [Cucumis sativus] >KGN48164.2 hypothetical protein C...	[more]

BLAST of Spg038163 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
E3SXU5	3.8e-51	64.86	Truncated basic helix-loop-helix protein A OS=Pisum sativum OX=3888 GN=BHLH PE=3...	[more]
E3SXU4	5.0e-51	64.19	Basic helix-loop-helix protein A OS=Pisum sativum OX=3888 GN=BHLH PE=3 SV=1	[more]
A0A2R6QE26	6.5e-51	64.19	Transcription factor BHLH42 OS=Actinidia chinensis var. chinensis OX=1590841 GN=...	[more]
Q9FT81	3.1e-45	61.18	Transcription factor TT8 OS=Arabidopsis thaliana OX=3702 GN=TT8 PE=1 SV=2	[more]
Q9FN69	2.0e-36	46.41	Transcription factor GLABRA 3 OS=Arabidopsis thaliana OX=3702 GN=GL3 PE=1 SV=1	[more]

BLAST of Spg038163 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K736	6.1e-60	73.99	basic helix-loop-helix protein A OS=Cucurbita maxima OX=3661 GN=LOC111491262 PE=...	[more]
A0A6J1ESI2	1.8e-59	72.57	basic helix-loop-helix protein A OS=Cucurbita moschata OX=3662 GN=LOC111437375 P...	[more]
A0A1S3BLF6	1.8e-56	74.23	basic helix-loop-helix protein A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491...	[more]
A0A5A7UUX4	7.2e-53	71.78	Basic helix-loop-helix protein A isoform X2 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BM28	7.2e-53	71.78	basic helix-loop-helix protein A isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491...	[more]

BLAST of Spg038163 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09820.1	2.2e-46	61.18	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G41315.1	1.4e-37	46.41	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G63650.1	4.2e-37	46.30	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G63650.2	4.2e-37	46.30	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G63650.3	4.2e-37	46.30	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025610	Transcription factor MYC/MYB N-terminal	PFAM	PF14215	bHLH-MYC_N	coord: 1..156 e-value: 1.9E-35 score: 122.8
None	No IPR available	PANTHER	PTHR46266	TRANSCRIPTION FACTOR TT8	coord: 2..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg038163.1	Spg038163.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity