Spg038155 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg038155
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Auxin responsive SAUR protein
Location	scaffold12: 40765093 .. 40765482 (-)
RNA-Seq Expression	Spg038155
Synteny	Spg038155

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTGCTTGGTCCTCCCTTGCTACGTCATGAAGAGACGACGGCGGAGGACCGCTCCACGCGTCGGCTACCGTCGTCTCAACAAATCCGAACTCCCCTGCAACGAGGGCGCGGAGGGTCCAGTGACGGTGGTGGTGGGGAAGGAAAAGAGAGAATTTTTGGTAGACCCTTTTGTGTTAGAAGAAAACCCGTTTCGGGTTTTGATCGAAAAAGGAGGAGATGAAGAAGAAAATGAGAAAGGTAGAGTGGGAAGAAGAAAAAGGGTGATATTTGTTGATGTTGATGCTATTTTGTTTGAGCATTTGTTGTGGCTGATGTACAATGATTGTTCTTCTTTGTTTAAGCTCAATGTAGAGGAAATTCTTGACTTTTATGCTCAAGATTTTTAG

mRNA sequence

ATGCCTTGCTTGGTCCTCCCTTGCTACGTCATGAAGAGACGACGGCGGAGGACCGCTCCACGCGTCGGCTACCGTCGTCTCAACAAATCCGAACTCCCCTGCAACGAGGGCGCGGAGGGTCCAGTGACGGTGGTGGTGGGGAAGGAAAAGAGAGAATTTTTGGTAGACCCTTTTGTGTTAGAAGAAAACCCGTTTCGGGTTTTGATCGAAAAAGGAGGAGATGAAGAAGAAAATGAGAAAGGTAGAGTGGGAAGAAGAAAAAGGGTGATATTTGTTGATGTTGATGCTATTTTGTTTGAGCATTTGTTGTGGCTGATGTACAATGATTGTTCTTCTTTGTTTAAGCTCAATGTAGAGGAAATTCTTGACTTTTATGCTCAAGATTTTTAG

Coding sequence (CDS)

ATGCCTTGCTTGGTCCTCCCTTGCTACGTCATGAAGAGACGACGGCGGAGGACCGCTCCACGCGTCGGCTACCGTCGTCTCAACAAATCCGAACTCCCCTGCAACGAGGGCGCGGAGGGTCCAGTGACGGTGGTGGTGGGGAAGGAAAAGAGAGAATTTTTGGTAGACCCTTTTGTGTTAGAAGAAAACCCGTTTCGGGTTTTGATCGAAAAAGGAGGAGATGAAGAAGAAAATGAGAAAGGTAGAGTGGGAAGAAGAAAAAGGGTGATATTTGTTGATGTTGATGCTATTTTGTTTGAGCATTTGTTGTGGCTGATGTACAATGATTGTTCTTCTTTGTTTAAGCTCAATGTAGAGGAAATTCTTGACTTTTATGCTCAAGATTTTTAG

Protein sequence

MPCLVLPCYVMKRRRRRTAPRVGYRRLNKSELPCNEGAEGPVTVVVGKEKREFLVDPFVLEENPFRVLIEKGGDEEENEKGRVGRRKRVIFVDVDAILFEHLLWLMYNDCSSLFKLNVEEILDFYAQDF

Homology

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BLAST of Spg038155 vs. NCBI nr
Match: XP_038888374.1 (uncharacterized protein LOC120078224 [Benincasa hispida])

HSP 1 Score: 202.6 bits (514), Expect = 2.1e-48
Identity = 105/131 (80.15%), Postives = 114/131 (87.02%), Query Frame = 0


Query: 1   MPCLVLPCYVMKRRRRR-TAPRVGYRRLNKSELPCNEGAEGP-VTVVVGKEKREFLVDPF 60
           M CLVLPCYVMKRRRRR T PR+GY RLNKS +   +GAE   V VV GKEKREFLVDPF
Sbjct: 1   MDCLVLPCYVMKRRRRRSTRPRLGYHRLNKSNVGRLDGAESSLVKVVAGKEKREFLVDPF 60

Query: 61  VLEENPFRVLIEKGGDEEENEKGRVGRRKRVIFVDVDAILFEHLLWLMYNDCSSLFKLNV 120
           VLEENPFR+LIEKGGD+ E+E+   G+RKRVIFVDVD+ILFEHLLWLMYNDCSSLFKLNV
Sbjct: 61  VLEENPFRILIEKGGDDNEDEE-EDGKRKRVIFVDVDSILFEHLLWLMYNDCSSLFKLNV 120

Query: 121 EEILDFYAQDF 130
           EEILDFYAQDF
Sbjct: 121 EEILDFYAQDF 130

[Close]

BLAST of Spg038155 vs. NCBI nr
Match: XP_011652654.1 (auxin-responsive protein SAUR78 [Cucumis sativus] >KGN60396.1 hypothetical protein Csa_001277 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 3.9e-47
Identity = 104/136 (76.47%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 1   MPCLVLPCYVMKRRRRR--TAPRVGYRRLNKSELPCNE-----GAEGPVTVVVGKEKREF 60
           M CLVLPCYVMKRRRRR  T P +GY RLNKS    NE          V VV GKE+REF
Sbjct: 1   MGCLVLPCYVMKRRRRRRSTQPHLGYHRLNKSNFGRNEYIGDHAESSLVKVVAGKERREF 60

Query: 61  LVDPFVLEENPFRVLIEKGGDEEENEKGRVGRRKRVIFVDVDAILFEHLLWLMYNDCSSL 120
           LVDPFVLEENPFR+LIEKGGD++E+E G  G+RKRVIFVDVDAILFEHLLWLMYNDCSSL
Sbjct: 61  LVDPFVLEENPFRILIEKGGDDDEDEDGD-GKRKRVIFVDVDAILFEHLLWLMYNDCSSL 120

Query: 121 FKLNVEEILDFYAQDF 130
           FKLNVEEILDFYAQDF
Sbjct: 121 FKLNVEEILDFYAQDF 135

[Close]

BLAST of Spg038155 vs. NCBI nr
Match: XP_008465964.1 (PREDICTED: uncharacterized protein LOC103503536 [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 1.6e-45
Identity = 100/135 (74.07%), Postives = 111/135 (82.22%), Query Frame = 0


Query: 1   MPCLVLPCYVMKRRRRR-TAPRVGYRRLNKSELPCNEGAEGP---VTVVVGKEKREFLVD 60
           M CLVLPCYVMKRRRRR T P +GY RL+KS    N+ ++     V VV GKE+REFLVD
Sbjct: 25  MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 84

Query: 61  PFVLEENPFRVLIEKGGDEEENE--KGRVGRRKRVIFVDVDAILFEHLLWLMYNDCSSLF 120
           PFVLEENPFR LIEKGGD +++E   G  G++KRVIFVDVDAILFEHLLWLMYNDCSSLF
Sbjct: 85  PFVLEENPFRTLIEKGGDSDDDEDGDGDHGKKKRVIFVDVDAILFEHLLWLMYNDCSSLF 144

Query: 121 KLNVEEILDFYAQDF 130
           KLNVEEILDFYAQDF
Sbjct: 145 KLNVEEILDFYAQDF 159

[Close]

BLAST of Spg038155 vs. NCBI nr
Match: KAA0038583.1 (Auxin responsive SAUR protein [Cucumis melo var. makuwa] >TYK31158.1 Auxin responsive SAUR protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 1.6e-45
Identity = 100/135 (74.07%), Postives = 111/135 (82.22%), Query Frame = 0


Query: 1   MPCLVLPCYVMKRRRRR-TAPRVGYRRLNKSELPCNEGAEGP---VTVVVGKEKREFLVD 60
           M CLVLPCYVMKRRRRR T P +GY RL+KS    N+ ++     V VV GKE+REFLVD
Sbjct: 1   MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 60

Query: 61  PFVLEENPFRVLIEKGGDEEENE--KGRVGRRKRVIFVDVDAILFEHLLWLMYNDCSSLF 120
           PFVLEENPFR LIEKGGD +++E   G  G++KRVIFVDVDAILFEHLLWLMYNDCSSLF
Sbjct: 61  PFVLEENPFRTLIEKGGDSDDDEDGDGDHGKKKRVIFVDVDAILFEHLLWLMYNDCSSLF 120

Query: 121 KLNVEEILDFYAQDF 130
           KLNVEEILDFYAQDF
Sbjct: 121 KLNVEEILDFYAQDF 135

[Close]

BLAST of Spg038155 vs. NCBI nr
Match: XP_022931160.1 (uncharacterized protein LOC111437423 [Cucurbita moschata])

HSP 1 Score: 166.4 bits (420), Expect = 1.6e-37
Identity = 91/131 (69.47%), Postives = 101/131 (77.10%), Query Frame = 0


Query: 1   MPCLV--LPCYVMKRRRRRTAPRVGYRRLNKSELPCNEGAEGPVTVVVGKEKREFLVDPF 60
           M CLV  LPCYVMKRRRRRTAPR+ YRRLNKS        E  V VVVGKE+ EFLVDPF
Sbjct: 1   MDCLVLLLPCYVMKRRRRRTAPRLPYRRLNKS--------ESLVRVVVGKERTEFLVDPF 60

Query: 61  VLEENPFRVLIEKGGDEEENEKGRVGRRKRVIFVDVDAILFEHLLWLMYNDCSSLFKLNV 120
           VLEENPFRVL+EKG  EE+  K R  R + +IFVDVDAILFEH LWL+YND SSL  LN+
Sbjct: 61  VLEENPFRVLMEKGRFEEKQGKRR--REEHIIFVDVDAILFEHFLWLIYNDSSSLLTLNL 120

Query: 121 EEILDFYAQDF 130
           +EIL FY+QDF
Sbjct: 121 DEILHFYSQDF 121

[Close]

BLAST of Spg038155 vs. ExPASy TrEMBL
Match: A0A0A0LK59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902380 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.9e-47
Identity = 104/136 (76.47%), Postives = 111/136 (81.62%), Query Frame = 0


Query: 1   MPCLVLPCYVMKRRRRR--TAPRVGYRRLNKSELPCNE-----GAEGPVTVVVGKEKREF 60
           M CLVLPCYVMKRRRRR  T P +GY RLNKS    NE          V VV GKE+REF
Sbjct: 1   MGCLVLPCYVMKRRRRRRSTQPHLGYHRLNKSNFGRNEYIGDHAESSLVKVVAGKERREF 60

Query: 61  LVDPFVLEENPFRVLIEKGGDEEENEKGRVGRRKRVIFVDVDAILFEHLLWLMYNDCSSL 120
           LVDPFVLEENPFR+LIEKGGD++E+E G  G+RKRVIFVDVDAILFEHLLWLMYNDCSSL
Sbjct: 61  LVDPFVLEENPFRILIEKGGDDDEDEDGD-GKRKRVIFVDVDAILFEHLLWLMYNDCSSL 120

Query: 121 FKLNVEEILDFYAQDF 130
           FKLNVEEILDFYAQDF
Sbjct: 121 FKLNVEEILDFYAQDF 135

[Close]

BLAST of Spg038155 vs. ExPASy TrEMBL
Match: A0A5D3E5S1 (Auxin responsive SAUR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004380 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.9e-46
Identity = 100/135 (74.07%), Postives = 111/135 (82.22%), Query Frame = 0


Query: 1   MPCLVLPCYVMKRRRRR-TAPRVGYRRLNKSELPCNEGAEGP---VTVVVGKEKREFLVD 60
           M CLVLPCYVMKRRRRR T P +GY RL+KS    N+ ++     V VV GKE+REFLVD
Sbjct: 1   MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 60

Query: 61  PFVLEENPFRVLIEKGGDEEENE--KGRVGRRKRVIFVDVDAILFEHLLWLMYNDCSSLF 120
           PFVLEENPFR LIEKGGD +++E   G  G++KRVIFVDVDAILFEHLLWLMYNDCSSLF
Sbjct: 61  PFVLEENPFRTLIEKGGDSDDDEDGDGDHGKKKRVIFVDVDAILFEHLLWLMYNDCSSLF 120

Query: 121 KLNVEEILDFYAQDF 130
           KLNVEEILDFYAQDF
Sbjct: 121 KLNVEEILDFYAQDF 135

[Close]

BLAST of Spg038155 vs. ExPASy TrEMBL
Match: A0A1S3CQ48 (uncharacterized protein LOC103503536 OS=Cucumis melo OX=3656 GN=LOC103503536 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.9e-46
Identity = 100/135 (74.07%), Postives = 111/135 (82.22%), Query Frame = 0


Query: 1   MPCLVLPCYVMKRRRRR-TAPRVGYRRLNKSELPCNEGAEGP---VTVVVGKEKREFLVD 60
           M CLVLPCYVMKRRRRR T P +GY RL+KS    N+ ++     V VV GKE+REFLVD
Sbjct: 25  MGCLVLPCYVMKRRRRRSTRPHLGYHRLHKSNFGRNDSSDAESSLVKVVAGKERREFLVD 84

Query: 61  PFVLEENPFRVLIEKGGDEEENE--KGRVGRRKRVIFVDVDAILFEHLLWLMYNDCSSLF 120
           PFVLEENPFR LIEKGGD +++E   G  G++KRVIFVDVDAILFEHLLWLMYNDCSSLF
Sbjct: 85  PFVLEENPFRTLIEKGGDSDDDEDGDGDHGKKKRVIFVDVDAILFEHLLWLMYNDCSSLF 144

Query: 121 KLNVEEILDFYAQDF 130
           KLNVEEILDFYAQDF
Sbjct: 145 KLNVEEILDFYAQDF 159

[Close]

BLAST of Spg038155 vs. ExPASy TrEMBL
Match: A0A6J1EYP5 (uncharacterized protein LOC111437423 OS=Cucurbita moschata OX=3662 GN=LOC111437423 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 7.9e-38
Identity = 91/131 (69.47%), Postives = 101/131 (77.10%), Query Frame = 0


Query: 1   MPCLV--LPCYVMKRRRRRTAPRVGYRRLNKSELPCNEGAEGPVTVVVGKEKREFLVDPF 60
           M CLV  LPCYVMKRRRRRTAPR+ YRRLNKS        E  V VVVGKE+ EFLVDPF
Sbjct: 1   MDCLVLLLPCYVMKRRRRRTAPRLPYRRLNKS--------ESLVRVVVGKERTEFLVDPF 60

Query: 61  VLEENPFRVLIEKGGDEEENEKGRVGRRKRVIFVDVDAILFEHLLWLMYNDCSSLFKLNV 120
           VLEENPFRVL+EKG  EE+  K R  R + +IFVDVDAILFEH LWL+YND SSL  LN+
Sbjct: 61  VLEENPFRVLMEKGRFEEKQGKRR--REEHIIFVDVDAILFEHFLWLIYNDSSSLLTLNL 120

Query: 121 EEILDFYAQDF 130
           +EIL FY+QDF
Sbjct: 121 DEILHFYSQDF 121

[Close]

BLAST of Spg038155 vs. ExPASy TrEMBL
Match: A0A6J1K475 (uncharacterized protein LOC111491030 OS=Cucurbita maxima OX=3661 GN=LOC111491030 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 2.2e-35
Identity = 87/130 (66.92%), Postives = 100/130 (76.92%), Query Frame = 0


Query: 1   MPCLV-LPCYVMKRRRRRTAPRVGYRRLNKSELPCNEGAEGPVTVVVGKEKREFLVDPFV 60
           M CLV LPCYVMK RRRRTAPR+ YRRL+KS        E  V VVVG+E+ EFLVDPFV
Sbjct: 1   MGCLVLLPCYVMKTRRRRTAPRLPYRRLDKS--------ESLVRVVVGEERTEFLVDPFV 60

Query: 61  LEENPFRVLIEKGGDEEENEKGRVGRRKRVIFVDVDAILFEHLLWLMYNDCSSLFKLNVE 120
           LEENPFRVL+EKG  EE+  K R    + +IFVDVDAILFEHLLWL+YND SSL  LN++
Sbjct: 61  LEENPFRVLMEKGRFEEKEGKRR--SEEHIIFVDVDAILFEHLLWLIYNDSSSLLTLNLD 120

Query: 121 EILDFYAQDF 130
           EIL FY+Q+F
Sbjct: 121 EILHFYSQEF 120

[Close]

BLAST of Spg038155 vs. TAIR 10
Match: AT2G35290.1 (unknown protein; Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-24
Identity = 64/130 (49.23%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 1   MPCLVLPCYVMKRRRRRTAPRVGYRRLNKSELPCNEGAEGPV-TVVVGKEKREFLVDPFV 60
           M CL+ P   ++R     + R  YR L        E  E PV  VVVGKEK+EF+V+P+V
Sbjct: 1   MGCLISPVMKLRRLSSADSRRFAYRNL-------AENMEDPVIRVVVGKEKKEFMVEPYV 60

Query: 61  LEENPFRVLIEKGGDEEENEKGRVGRRKRVIFVD-VDAILFEHLLWLMYNDCSSLFKLNV 120
           LEE PFRVLI   G  ++  K R+ R  RV+++D VD+ILFEHLLWL+ ND S+   L+V
Sbjct: 61  LEEYPFRVLI---GSAKDRAKNRLNRTGRVVWLDHVDSILFEHLLWLLRNDASTFSDLDV 120

Query: 121 EEILDFYAQD 129
            EI++FYAQD
Sbjct: 121 LEIIEFYAQD 120

The following BLAST results are available for this feature:

BLAST of Spg038155 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888374.1	2.1e-48	80.15	uncharacterized protein LOC120078224 [Benincasa hispida]	[more]
XP_011652654.1	3.9e-47	76.47	auxin-responsive protein SAUR78 [Cucumis sativus] >KGN60396.1 hypothetical prote...	[more]
XP_008465964.1	1.6e-45	74.07	PREDICTED: uncharacterized protein LOC103503536 [Cucumis melo]	[more]
KAA0038583.1	1.6e-45	74.07	Auxin responsive SAUR protein [Cucumis melo var. makuwa] >TYK31158.1 Auxin respo...	[more]
XP_022931160.1	1.6e-37	69.47	uncharacterized protein LOC111437423 [Cucurbita moschata]	[more]

BLAST of Spg038155 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg038155 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK59	1.9e-47	76.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902380 PE=4 SV=1	[more]
A0A5D3E5S1	7.9e-46	74.07	Auxin responsive SAUR protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CQ48	7.9e-46	74.07	uncharacterized protein LOC103503536 OS=Cucumis melo OX=3656 GN=LOC103503536 PE=...	[more]
A0A6J1EYP5	7.9e-38	69.47	uncharacterized protein LOC111437423 OS=Cucurbita moschata OX=3662 GN=LOC1114374...	[more]
A0A6J1K475	2.2e-35	66.92	uncharacterized protein LOC111491030 OS=Cucurbita maxima OX=3661 GN=LOC111491030...	[more]

BLAST of Spg038155 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35290.1	2.2e-24	49.23	unknown protein; Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 16..106 e-value: 1.1E-6 score: 28.7
None	No IPR available	PANTHER	PTHR35296:SF3	EXPRESSED PROTEIN	coord: 1..128
None	No IPR available	PANTHER	PTHR35296	EXPRESSED PROTEIN	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg038155.1	Spg038155.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding