Spg038089 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg038089
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCLAVATA3/ESR-RELATED 44
Locationscaffold12: 41723831 .. 41724361 (-)
RNA-Seq ExpressionSpg038089
SyntenySpg038089
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCAACAAGAATTTCAAGTTCGCTTAATTCTGAATTCCACGAACAACGTCATTCTCGTCGCCTGATTCCATCTCTAACTCTTTTTTTCCTCTTACTCACCGCCGCCGTGCTTGGCAGCCCTTCCATGGCTGCCTCGGAGCCGCGGAGACGTCTAAATGAACGTTCCTCGAACAATCCGCCGCGGAAACAGAGGTTGGAGTCGGAATCTGGCGGCCGAAGGCGGAGAGACGATCGTCGATTTGAATCCGCGGCTCTCGAAGTTCTGACCGGACCGAAACCTATTTCGAACAATCCGCCGCGGAAACAGAGGCTTGAGTCGGAAGCTGGCGGCCGGAGGCGGAGAGACGATCGTCAACTTGAATCTACAACTCTCGAAGTTCCGAACGGAACGAGTCATGTTTCGAACAATCATCCGCGGAAACGGATGTCCGACTTGGAATCCGGCGGACGGCGGCGGAGAGAAGGTAGTCGATTTGAATCTGCGGCGCACGAAGTTCCGAGCGGGCCGAATCCGATTTCGAACTAA

mRNA sequence

ATGGCCGCAACAAGAATTTCAAGTTCGCTTAATTCTGAATTCCACGAACAACGTCATTCTCGTCGCCTGATTCCATCTCTAACTCTTTTTTTCCTCTTACTCACCGCCGCCGTGCTTGGCAGCCCTTCCATGGCTGCCTCGGAGCCGCGGAGACGTCTAAATGAACGTTCCTCGAACAATCCGCCGCGGAAACAGAGGTTGGAGTCGGAATCTGGCGGCCGAAGGCGGAGAGACGATCGTCGATTTGAATCCGCGGCTCTCGAAGTTCTGACCGGACCGAAACCTATTTCGAACAATCCGCCGCGGAAACAGAGGCTTGAGTCGGAAGCTGGCGGCCGGAGGCGGAGAGACGATCGTCAACTTGAATCTACAACTCTCGAAGTTCCGAACGGAACGAGTCATGTTTCGAACAATCATCCGCGGAAACGGATGTCCGACTTGGAATCCGGCGGACGGCGGCGGAGAGAAGGTAGTCGATTTGAATCTGCGGCGCACGAAGTTCCGAGCGGGCCGAATCCGATTTCGAACTAA

Coding sequence (CDS)

ATGGCCGCAACAAGAATTTCAAGTTCGCTTAATTCTGAATTCCACGAACAACGTCATTCTCGTCGCCTGATTCCATCTCTAACTCTTTTTTTCCTCTTACTCACCGCCGCCGTGCTTGGCAGCCCTTCCATGGCTGCCTCGGAGCCGCGGAGACGTCTAAATGAACGTTCCTCGAACAATCCGCCGCGGAAACAGAGGTTGGAGTCGGAATCTGGCGGCCGAAGGCGGAGAGACGATCGTCGATTTGAATCCGCGGCTCTCGAAGTTCTGACCGGACCGAAACCTATTTCGAACAATCCGCCGCGGAAACAGAGGCTTGAGTCGGAAGCTGGCGGCCGGAGGCGGAGAGACGATCGTCAACTTGAATCTACAACTCTCGAAGTTCCGAACGGAACGAGTCATGTTTCGAACAATCATCCGCGGAAACGGATGTCCGACTTGGAATCCGGCGGACGGCGGCGGAGAGAAGGTAGTCGATTTGAATCTGCGGCGCACGAAGTTCCGAGCGGGCCGAATCCGATTTCGAACTAA

Protein sequence

MAATRISSSLNSEFHEQRHSRRLIPSLTLFFLLLTAAVLGSPSMAASEPRRRLNERSSNNPPRKQRLESESGGRRRRDDRRFESAALEVLTGPKPISNNPPRKQRLESEAGGRRRRDDRQLESTTLEVPNGTSHVSNNHPRKRMSDLESGGRRRREGSRFESAAHEVPSGPNPISN
Homology
BLAST of Spg038089 vs. NCBI nr
Match: XP_022931103.1 (uncharacterized protein LOC111437389 [Cucurbita moschata])

HSP 1 Score: 165.6 bits (418), Expect = 3.8e-37
Identity = 106/176 (60.23%), Postives = 119/176 (67.61%), Query Frame = 0

Query: 1   MAATRISSSLNSEFHEQRHSRRLIPSLTLFFLLLTAAVLGSPSMAASEPRRRLNERSSNN 60
           MA    SSS NS       SR LIPSLTL F+ LTA VLGSPSMAASE + RL   S NN
Sbjct: 1   MATASSSSSPNSS-----SSRNLIPSLTLLFVFLTAVVLGSPSMAASESQTRLIPHSLNN 60

Query: 61  PPRKQRLESESGGRRRRDDRRFESAALEVLTGPKPISNNPPRKQRLESEAGGRRRRDDRQ 120
           PPRK RLESESGGRR RDDR  ESA  EV +G   + NNPPRKQR +SE+GGR RR+DR 
Sbjct: 61  PPRKHRLESESGGRRPRDDRPLESAVFEVTSGTNHVLNNPPRKQRSDSESGGRGRRNDRD 120

Query: 121 LESTTLEVPNGTSHVSNNHPRKRMSDLESGGRRRREGSRFESAAHEVPSGPNPISN 177
                          SN+ PR++  D +SGG +RR+ SRFESAAHEVPSGPNPISN
Sbjct: 121 ---------------SNSPPRQQSLDKKSGG-QRRDDSRFESAAHEVPSGPNPISN 155

BLAST of Spg038089 vs. NCBI nr
Match: KAA0068203.1 (hypothetical protein E6C27_scaffold238G001890 [Cucumis melo var. makuwa] >TYK21123.1 hypothetical protein E5676_scaffold392G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 5.5e-28
Identity = 112/245 (45.71%), Postives = 126/245 (51.43%), Query Frame = 0

Query: 1   MAATRISSSLNSEFHEQRHSR---------RLIPSLTLFFLLLTAAVLGSPSMAASEP-- 60
           MAAT IS+S  S   +Q HS           L P LTL FL LT A+LGSPSMAA EP  
Sbjct: 1   MAATTISTSPISLSLKQSHSHHHRPHHHLFHLTPYLTLLFLFLTIAILGSPSMAALEPLK 60

Query: 61  --------RRRLNER--------------SSNNPPRKQRLESESGGRRRRDDRRFESAAL 120
                   RRR + R              +SNN  ++QRLESES  RR  D RRFES   
Sbjct: 61  SVSESTGTRRRDDRRFESAVLQVPSGPKPTSNNLLQEQRLESESSNRRWTDYRRFES--- 120

Query: 121 EVLTGPKPISN-----------------------------------NPPRKQRLESEAGG 177
               GPKPISN                                   NPPRK+RLESE+ G
Sbjct: 121 ---DGPKPISNSSMQKLVSESESNGRRWRGYRRFESVASGTKSSSKNPPRKKRLESESSG 180

BLAST of Spg038089 vs. NCBI nr
Match: KAE8650847.1 (hypothetical protein Csa_002136 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 3.6e-27
Identity = 99/212 (46.70%), Postives = 113/212 (53.30%), Query Frame = 0

Query: 1   MAATRISSSLNSEFHEQRHSR-------RLIPSLTLFFLLLTAAVLGSPSMAASEPRRRL 60
           MAA  IS+S  S+  +Q H++        LIPSLTL FL LT  +LGSPSMAA EP    
Sbjct: 1   MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNS- 60

Query: 61  NERSSNNPPRKQRLESESGGRRRRDDRRFESAALEVLTGPKPISNNPPRKQRLESEAGGR 120
                         ESES G RRRDD RFESA L+V +G KP SNN  +KQRL SE+  R
Sbjct: 61  --------------ESESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSR 120

Query: 121 RRRDDRQLESTTLE-----------------------------VPNGTSHVSNNHPRKRM 177
            RRD R+ ES   +                               +GT   SNN PRK+ 
Sbjct: 121 LRRDYRRFESDESKPISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKR 180

BLAST of Spg038089 vs. ExPASy TrEMBL
Match: A0A6J1EXF7 (uncharacterized protein LOC111437389 OS=Cucurbita moschata OX=3662 GN=LOC111437389 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37
Identity = 106/176 (60.23%), Postives = 119/176 (67.61%), Query Frame = 0

Query: 1   MAATRISSSLNSEFHEQRHSRRLIPSLTLFFLLLTAAVLGSPSMAASEPRRRLNERSSNN 60
           MA    SSS NS       SR LIPSLTL F+ LTA VLGSPSMAASE + RL   S NN
Sbjct: 1   MATASSSSSPNSS-----SSRNLIPSLTLLFVFLTAVVLGSPSMAASESQTRLIPHSLNN 60

Query: 61  PPRKQRLESESGGRRRRDDRRFESAALEVLTGPKPISNNPPRKQRLESEAGGRRRRDDRQ 120
           PPRK RLESESGGRR RDDR  ESA  EV +G   + NNPPRKQR +SE+GGR RR+DR 
Sbjct: 61  PPRKHRLESESGGRRPRDDRPLESAVFEVTSGTNHVLNNPPRKQRSDSESGGRGRRNDRD 120

Query: 121 LESTTLEVPNGTSHVSNNHPRKRMSDLESGGRRRREGSRFESAAHEVPSGPNPISN 177
                          SN+ PR++  D +SGG +RR+ SRFESAAHEVPSGPNPISN
Sbjct: 121 ---------------SNSPPRQQSLDKKSGG-QRRDDSRFESAAHEVPSGPNPISN 155

BLAST of Spg038089 vs. ExPASy TrEMBL
Match: A0A0A0LE33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G626150 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.1e-29
Identity = 108/237 (45.57%), Postives = 128/237 (54.01%), Query Frame = 0

Query: 1   MAATRISSSLNSEFHEQRHSR-------RLIPSLTLFFLLLTAAVLGSPSMAASEP---- 60
           MAA  IS+S  S+  +Q H++        LIPSLTL FL LT  +LGSPSMAA EP    
Sbjct: 1   MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE 60

Query: 61  ------RRRLNER--------------SSNNPPRKQRLESESGGRRRRDDRRFESAALEV 120
                 RRR + R              +SNN  +KQRL SES  R RRD RRFES   + 
Sbjct: 61  SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP 120

Query: 121 L-----------------------------TGPKPISNNPPRKQRLESEAGGRRRRDDRQ 177
           +                             +G KP SNNPPRK+RL+ E+ GRR RD R+
Sbjct: 121 ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRWRDYRR 180

BLAST of Spg038089 vs. ExPASy TrEMBL
Match: A0A5D3DC24 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G001030 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.7e-28
Identity = 112/245 (45.71%), Postives = 126/245 (51.43%), Query Frame = 0

Query: 1   MAATRISSSLNSEFHEQRHSR---------RLIPSLTLFFLLLTAAVLGSPSMAASEP-- 60
           MAAT IS+S  S   +Q HS           L P LTL FL LT A+LGSPSMAA EP  
Sbjct: 1   MAATTISTSPISLSLKQSHSHHHRPHHHLFHLTPYLTLLFLFLTIAILGSPSMAALEPLK 60

Query: 61  --------RRRLNER--------------SSNNPPRKQRLESESGGRRRRDDRRFESAAL 120
                   RRR + R              +SNN  ++QRLESES  RR  D RRFES   
Sbjct: 61  SVSESTGTRRRDDRRFESAVLQVPSGPKPTSNNLLQEQRLESESSNRRWTDYRRFES--- 120

Query: 121 EVLTGPKPISN-----------------------------------NPPRKQRLESEAGG 177
               GPKPISN                                   NPPRK+RLESE+ G
Sbjct: 121 ---DGPKPISNSSMQKLVSESESNGRRWRGYRRFESVASGTKSSSKNPPRKKRLESESSG 180

BLAST of Spg038089 vs. TAIR 10
Match: AT4G13195.1 (CLAVATA3/ESR-RELATED 44 )

HSP 1 Score: 41.6 bits (96), Expect = 7.7e-04
Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 0

Query: 139 HPRKRMSDLESGGRRRREGSRFESAAHEVPSGPNPISN 177
           HPR+  +   S  +RRRE   F + AHEVPSGPNPISN
Sbjct: 78  HPRRSGTSSSSARKRRRE---FRAEAHEVPSGPNPISN 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022931103.13.8e-3760.23uncharacterized protein LOC111437389 [Cucurbita moschata][more]
KAA0068203.15.5e-2845.71hypothetical protein E6C27_scaffold238G001890 [Cucumis melo var. makuwa] >TYK211... [more]
KAE8650847.13.6e-2746.70hypothetical protein Csa_002136 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EXF71.8e-3760.23uncharacterized protein LOC111437389 OS=Cucurbita moschata OX=3662 GN=LOC1114373... [more]
A0A0A0LE334.1e-2945.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G626150 PE=4 SV=1[more]
A0A5D3DC242.7e-2845.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT4G13195.17.7e-0457.89CLAVATA3/ESR-RELATED 44 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 139..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..176

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg038089.1Spg038089.1mRNA