Spg038082 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg038082
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSWIM-type domain-containing protein
Locationscaffold12: 39824362 .. 39826950 (-)
RNA-Seq ExpressionSpg038082
SyntenySpg038082
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTAATAGTTTCGAAAACTGTGAAATCGCCACTGCGATTTATTGAGACTATATGCGATCAGTACTAGCATTTCACTTCCTTCTCCTCCTGCAATCTCGGCGGTTGTGGCCGCCGGAAGTTCCTCAACCGGTGGAATATCCGGCGGGCTATCGAACGACCGGCAGCGTGTGCAAACTTCCCAGTGGCTGCTGATTTCGAGAGGTAAAAATGTGGAATGTCAATGGCTAGGGTTTCTAGGGTTTTGAATCTTATGGTTTTCTTGTTTCACAGTAGCTTCCCTATCTCTTCTAGCTTCTAGAGCTTTGTTGAATGCTAAAATGTTTCTGTGCTGTTGGATGAATCTGTTTGAATCTTGTGAAAACTGTTGAGATGAATCTGTTTGGATGAAATTGTTTCTGGGCCTGTTAGATTAGTTGGGGGATTTTTGTTGGATGGTTGTGTAATGGGAATACTCTGCAATGATCAGAAGGGAATTGCATTTACATTTTGAGATTATTCATAGATTAATCTGTTAAATAAAATGAAAATAGCCAAATCCTTTTGACAGTTTTTTCTTCCAAATCTATGTAATTTTGGTAGGTTTCTCTGAGATTGGAGAAGTATGATTTACTTACATGTAATGAACTTCATTTTGTAGTTGAATTCTTTGCTGCTTTATATGAAATGGAGGAGAAGGTTATACTCTTATTGTGCTATACAGAGGGAGTGACTAACGATGGACCAAATGGTATATCCTTTAGAGGACCTCCATCGAAAGGAATTACATTTCAAGAAGGCAAGGGATTTGATGAGTTGAAAAAGAGGTTGAATGATGAATTTGACACTCTAGGAGGGCTTGGAGAGTTGGAAATAACTTATCGATGTCCTGCAAGTAATGTATCAAAGTCTACTCGATTTGTGCCTCTGCTCCTTCGAAATGATAATGACGTGAAGTTTATGACCACTATTGCCACTCATTTACAAGTTCCTAGTTGTGTAGAGTTGTATATTAAGAGATCTCAAACCTTTGCATCACAAATTCCAACCACAAGTCTAAAGAGAAAGTTGGACGCAAGTGAATTATTAAGTTTTCGTAATCGGCAGAATGCATATGAAGAATTTCCTAGATGGATGAACATGTTAGTACACACAAACAAAGGCACTCAAGTTCAATGGGATTTGATTTCGAGGGGCACGAGTGGTTATTATAAATTTAAACGAGTTTTTTGGTCGTTTGGTGCTGTGATTGAAGGTTTTGCATATTGTAGGCCATTCATACAAGTTGATGGTATCCCGTTATCCAATTACTATCATGATGGGCCTTTGTTGTTTGCCACATCTGTAGATTCAAATGGGTGTATATACCCTCTTGCTTTTGCAATTGTTGAGGAAGAAAGTGATGATAGTTGGTCATGGTTTTTGCGTATCTTGCGAACGCGGGTCACACAACGAGATGGTATATGTCTAATTTCAAATATGCATAAAGGTATTTTGTCGGTTGTAAATGATCCTAACAGCGGTTGGAAAGAGCCAAAAGCACATCATCGCTTATGCCTTCAACATATGGCAACTAGCTTTGATGGAACATATAAAAAGAAAGATCTGAAGGATTTAATGTATCGTGCAGGATGTCAACACCAGAAGCACAAGTATGAAAAATGTATGAATGAGTTAAAACAACTTAATCCAAGGTGCCTAAATTTCTTCACCCATGTAAGTACAGAAAAATGGACACAATCATATGATAATGGATATCGTTATGGTTGGTTGATCACAAACTTAGCTGAATGTATGAACGATGTTCTCGAGGGAGTTAGTAGGTTACCCATTGATGCAATAGTTAAATTAACGTTTCATCGTTGTGTAGAAATCTTCTGTCAACGTAAGGTTGGAATTTGTGTGGCATTGGGTAGGGGAGAGTCATACACAAAGTATGCAATGGAAAAGATAAGCAAGTGGAAGGAAAGAGCCAGTTCGCACACAGTAGTTACATTGGATAACATGAATGAAACTTTTGAAGTGGTCACAGGTAGTCATGGATCAACGTCCCCTAAAGGCCAAAACAAACAAACGGTTAGATTAAAGGATAAAACATGTACTTGCAATAAGTGGCAATCATTTGGGATTCCATGCTCTCATCTAATTGCAGTTTGTTTATATTGCCACATGGACTACTGGAAATTTGTTGAAGACTACTACAAATTGACAGTATACAAATCATGTTATACCCCTTCATTTAATCGTTTTGATCCTTTACCTGACAAATGTTGTTGGCCTAAAATGAACTTTATGATAGAGCATCCAAAGGGGTACTGGATGGGAGAATGCCATAAAGATACTTCACGCACTCGTAACGCGATCGATTGGGTAAAGGTCAGTACAAAAACTCGATGTGGACTATGTAAACAAGAAGGGCATAAGAGACGTTTTTGCCCAAGCCAGAAGAAAGGAGCTTCATCTTGCACAAATAACAAGAGCTAAGACTTACTTCCCCCTTTCATGCATATCAATGTTCATGATGATGTACTTATCATATGATTGTAATGGACTTCTTTTTGTTGTTAACTTTCCACAGGTTTAAAACCTCTGGTTCTTCCTTACACCATTAG

mRNA sequence

ATGGAGGAGAAGGTTATACTCTTATTGTGCTATACAGAGGGAGTGACTAACGATGGACCAAATGGTATATCCTTTAGAGGACCTCCATCGAAAGGAATTACATTTCAAGAAGGCAAGGGATTTGATGAGTTGAAAAAGAGGTTGAATGATGAATTTGACACTCTAGGAGGGCTTGGAGAGTTGGAAATAACTTATCGATGTCCTGCAAGTAATGTATCAAAGTCTACTCGATTTGTGCCTCTGCTCCTTCGAAATGATAATGACGTGAAGTTTATGACCACTATTGCCACTCATTTACAAGTTCCTAGTTGTGTAGAGTTGTATATTAAGAGATCTCAAACCTTTGCATCACAAATTCCAACCACAAGTCTAAAGAGAAAGTTGGACGCAAGTGAATTATTAAGTTTTCGTAATCGGCAGAATGCATATGAAGAATTTCCTAGATGGATGAACATGTTTAAAACCTCTGGTTCTTCCTTACACCATTAG

Coding sequence (CDS)

ATGGAGGAGAAGGTTATACTCTTATTGTGCTATACAGAGGGAGTGACTAACGATGGACCAAATGGTATATCCTTTAGAGGACCTCCATCGAAAGGAATTACATTTCAAGAAGGCAAGGGATTTGATGAGTTGAAAAAGAGGTTGAATGATGAATTTGACACTCTAGGAGGGCTTGGAGAGTTGGAAATAACTTATCGATGTCCTGCAAGTAATGTATCAAAGTCTACTCGATTTGTGCCTCTGCTCCTTCGAAATGATAATGACGTGAAGTTTATGACCACTATTGCCACTCATTTACAAGTTCCTAGTTGTGTAGAGTTGTATATTAAGAGATCTCAAACCTTTGCATCACAAATTCCAACCACAAGTCTAAAGAGAAAGTTGGACGCAAGTGAATTATTAAGTTTTCGTAATCGGCAGAATGCATATGAAGAATTTCCTAGATGGATGAACATGTTTAAAACCTCTGGTTCTTCCTTACACCATTAG

Protein sequence

MEEKVILLLCYTEGVTNDGPNGISFRGPPSKGITFQEGKGFDELKKRLNDEFDTLGGLGELEITYRCPASNVSKSTRFVPLLLRNDNDVKFMTTIATHLQVPSCVELYIKRSQTFASQIPTTSLKRKLDASELLSFRNRQNAYEEFPRWMNMFKTSGSSLHH
Homology
BLAST of Spg038082 vs. NCBI nr
Match: PWA56593.1 (DNA-binding WRKY [Artemisia annua])

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-07
Identity = 38/128 (29.69%), Postives = 65/128 (50.78%), Query Frame = 0

Query: 1   MEEKVILLLCYTEGVTNDGPNGISFRGPPSKGITFQEGKGFDELKKRLNDEFDTLGGLGE 60
           M  K ++LLCY  G   DGP G+ +  PPSK I  Q G  F+EL  +L+           
Sbjct: 1   MTSKCVILLCYWGGNICDGPEGVCYNKPPSKAIKVQPGIKFNELMNQLHVATSIDKQKNC 60

Query: 61  LEITYRCPASNVSKSTRFVPLLLRNDNDVKFMTTIATHLQVPSCVELYIKRSQTFASQIP 120
           +++  R P S   K  +++PL + +D+D++ M  +    Q  S ++LY++      ++I 
Sbjct: 61  IKVICRYP-SGFGKMMKYIPLPITDDDDIEIMFQVLNVYQELSTIDLYLEVETQRHTKIA 120

Query: 121 TTSLKRKL 129
             + K+ L
Sbjct: 121 RRTQKKSL 127

BLAST of Spg038082 vs. NCBI nr
Match: RVX08500.1 (hypothetical protein CK203_014195 [Vitis vinifera])

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-06
Identity = 34/117 (29.06%), Postives = 57/117 (48.72%), Query Frame = 0

Query: 8   LLCYTEGVTNDGPNGISFRGPPSKGITFQEGKGFDELKKRLNDEFDTLGGLGELEITYRC 67
           +LCYT G   D   G+ +  PP KG++      FDEL+ +L    +      +L + +R 
Sbjct: 7   VLCYTRGEIIDCEFGVCYNRPPEKGVSINSMITFDELETKLCHALNINRTYIKLNMVFRY 66

Query: 68  PA--SNVSKSTRFVPLLLRNDNDVKFMTTIATHLQVPSCVELYIKRSQTFASQIPTT 123
           P    N   +  +VPL +R+D DV  M T+      P+ +E+Y + S      +P++
Sbjct: 67  PVPFPNGRGTVNYVPLPIRDDGDVSIMFTVVAQSPPPNTIEMYCQTSSIDYHPMPSS 123

BLAST of Spg038082 vs. NCBI nr
Match: XP_023765763.1 (uncharacterized protein LOC111914214 [Lactuca sativa])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-05
Identity = 35/110 (31.82%), Postives = 60/110 (54.55%), Query Frame = 0

Query: 1   MEEKVILLLCYTEGVTNDGPNGISFRGPPSKGITFQEGKGFDELKKRLNDEFDTLGGLGE 60
           M  K + LLCY +G   DG  GI++   PSK I  Q G  F++L  +++           
Sbjct: 20  MTSKFVTLLCYRDGKIYDGKEGITYNKSPSKAIKVQCGIQFNDLINQIHFATSIDKQKYG 79

Query: 61  LEITYRCPASNVSKSTRFVPLLLRNDNDVKFMTTIATHLQVPSCVELYIK 111
           +++  R P S V K  +++PL +++DNDV+ M  + +  Q  S ++LY++
Sbjct: 80  IKVICRYP-SVVGKVMKYIPLPIKDDNDVEIMFDVLSLHQELSNIDLYLE 128

BLAST of Spg038082 vs. NCBI nr
Match: XP_042754022.1 (uncharacterized protein LOC111889720 isoform X1 [Lactuca sativa])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-05
Identity = 34/109 (31.19%), Postives = 57/109 (52.29%), Query Frame = 0

Query: 4   KVILLLCYTEGVTNDGPNGISFRGPPSKGITFQEGKGFDELKKR--LNDEFDTLGGLGEL 63
           +V+ +LCY  G T DGP+GI++   P K I       FDEL  R  L   FD       +
Sbjct: 2   EVVTMLCYWGGTTCDGPDGINYSKAPKKAINVNCRIQFDELVDRIYLATSFDKQH--HRI 61

Query: 64  EITYRCPASNVSKSTRFVPLLLRNDNDVKFMTTIATHLQVPSCVELYIK 111
            + YR P+  +    +++PL +++++DV  M  +    Q  S ++LY++
Sbjct: 62  NLIYRYPSVGIENVVKYIPLPIKDNDDVGIMFDVLRFHQEVSNIDLYLE 108

BLAST of Spg038082 vs. NCBI nr
Match: XP_023741643.1 (uncharacterized protein LOC111889720 isoform X2 [Lactuca sativa])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-05
Identity = 34/109 (31.19%), Postives = 57/109 (52.29%), Query Frame = 0

Query: 4   KVILLLCYTEGVTNDGPNGISFRGPPSKGITFQEGKGFDELKKR--LNDEFDTLGGLGEL 63
           +V+ +LCY  G T DGP+GI++   P K I       FDEL  R  L   FD       +
Sbjct: 2   EVVTMLCYWGGTTCDGPDGINYSKAPKKAINVNCRIQFDELVDRIYLATSFDKQH--HRI 61

Query: 64  EITYRCPASNVSKSTRFVPLLLRNDNDVKFMTTIATHLQVPSCVELYIK 111
            + YR P+  +    +++PL +++++DV  M  +    Q  S ++LY++
Sbjct: 62  NLIYRYPSVGIENVVKYIPLPIKDNDDVGIMFDVLRFHQEVSNIDLYLE 108

BLAST of Spg038082 vs. ExPASy TrEMBL
Match: A0A2U1M5P5 (DNA-binding WRKY OS=Artemisia annua OX=35608 GN=CTI12_AA415840 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-07
Identity = 38/128 (29.69%), Postives = 65/128 (50.78%), Query Frame = 0

Query: 1   MEEKVILLLCYTEGVTNDGPNGISFRGPPSKGITFQEGKGFDELKKRLNDEFDTLGGLGE 60
           M  K ++LLCY  G   DGP G+ +  PPSK I  Q G  F+EL  +L+           
Sbjct: 1   MTSKCVILLCYWGGNICDGPEGVCYNKPPSKAIKVQPGIKFNELMNQLHVATSIDKQKNC 60

Query: 61  LEITYRCPASNVSKSTRFVPLLLRNDNDVKFMTTIATHLQVPSCVELYIKRSQTFASQIP 120
           +++  R P S   K  +++PL + +D+D++ M  +    Q  S ++LY++      ++I 
Sbjct: 61  IKVICRYP-SGFGKMMKYIPLPITDDDDIEIMFQVLNVYQELSTIDLYLEVETQRHTKIA 120

Query: 121 TTSLKRKL 129
             + K+ L
Sbjct: 121 RRTQKKSL 127

BLAST of Spg038082 vs. ExPASy TrEMBL
Match: A0A438JHT2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_014195 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-06
Identity = 34/117 (29.06%), Postives = 57/117 (48.72%), Query Frame = 0

Query: 8   LLCYTEGVTNDGPNGISFRGPPSKGITFQEGKGFDELKKRLNDEFDTLGGLGELEITYRC 67
           +LCYT G   D   G+ +  PP KG++      FDEL+ +L    +      +L + +R 
Sbjct: 7   VLCYTRGEIIDCEFGVCYNRPPEKGVSINSMITFDELETKLCHALNINRTYIKLNMVFRY 66

Query: 68  PA--SNVSKSTRFVPLLLRNDNDVKFMTTIATHLQVPSCVELYIKRSQTFASQIPTT 123
           P    N   +  +VPL +R+D DV  M T+      P+ +E+Y + S      +P++
Sbjct: 67  PVPFPNGRGTVNYVPLPIRDDGDVSIMFTVVAQSPPPNTIEMYCQTSSIDYHPMPSS 123

BLAST of Spg038082 vs. ExPASy TrEMBL
Match: A0A2U1NKX3 (MuDR family transposase OS=Artemisia annua OX=35608 GN=CTI12_AA253070 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-05
Identity = 32/109 (29.36%), Postives = 57/109 (52.29%), Query Frame = 0

Query: 1   MEEKVILLLCYTEGVTNDGPNGISFRGPPSKGITFQEGKGFDELKKRLNDEFDTLGGLGE 60
           M  K + LLCY +G   DGP G+ +  PPSK I  Q G  +++L  +++           
Sbjct: 25  MVPKFVTLLCYWDGAICDGPEGVFYNKPPSKAIKVQCGIRYNQLINQIHSAIPIDKQQHH 84

Query: 61  LEITYRCPASNVSKSTRFVPLLLRNDNDVKFMTTIATHLQVPSCVELYI 110
           +++  R P +   K  +++ L + ++NDV+ M  + T  +  S ++LYI
Sbjct: 85  IKVICRYP-TVAGKVMKYISLHINDNNDVEIMFDVLTRHKKLSNIDLYI 132

BLAST of Spg038082 vs. ExPASy TrEMBL
Match: A0A2U1Q3T2 (MuDR family transposase OS=Artemisia annua OX=35608 GN=CTI12_AA052360 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-05
Identity = 35/114 (30.70%), Postives = 57/114 (50.00%), Query Frame = 0

Query: 1   MEEKVILLLCYTEGVTNDGPNGISFRGPPSKGITFQEGKGFDELKKRLNDEFDTLGGLGE 60
           M  K + LLCY +G   DGP G+ +   PSK I  Q G  +DEL  +++           
Sbjct: 1   MAPKFVTLLCYWDGAICDGPEGVFYNKSPSKAIKVQCGIRYDELIDQIHSAIPIDKQQHR 60

Query: 61  LEITYRCPASNVSKSTRFVPLLLRNDNDVKFMTTIATHLQVPSCVELYIKRSQT 115
           ++I  R P +   K  +++ L + ++NDV  M  + T  +  S ++LYI+   T
Sbjct: 61  IKIICRYP-TVAGKVMKYISLHINDNNDVGIMFDVLTCHKKLSNIDLYIELEDT 113

BLAST of Spg038082 vs. ExPASy TrEMBL
Match: A0A438HFK5 (SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044939 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-04
Identity = 27/110 (24.55%), Postives = 57/110 (51.82%), Query Frame = 0

Query: 3   EKVILLLCYTEGVTNDGPNGISFRGPPSKGITFQEGKGFDELKKRLNDEFDTLGGLGELE 62
           + ++ ++CY +G   DGPNG+ +  PP KG+       +DEL+ +L            L 
Sbjct: 2   DSLLTIVCYKDGEIIDGPNGVCYSCPPKKGVLVNNLIKYDELEDKLCHVMSIDRTHTMLS 61

Query: 63  ITYRCP--ASNVSKSTRFVPLLLRNDNDVKFMTTIATHLQVPSCVELYIK 111
           + +R P   S  + +  ++ L +++D+DV+ M  +   +   + +E+Y++
Sbjct: 62  VIFRYPILMSIGNGNINYIQLPIKDDDDVRLMFHVVAQIPPSNTIEMYLQ 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PWA56593.12.9e-0729.69DNA-binding WRKY [Artemisia annua][more]
RVX08500.15.5e-0629.06hypothetical protein CK203_014195 [Vitis vinifera][more]
XP_023765763.11.2e-0531.82uncharacterized protein LOC111914214 [Lactuca sativa][more]
XP_042754022.11.2e-0531.19uncharacterized protein LOC111889720 isoform X1 [Lactuca sativa][more]
XP_023741643.11.2e-0531.19uncharacterized protein LOC111889720 isoform X2 [Lactuca sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2U1M5P51.4e-0729.69DNA-binding WRKY OS=Artemisia annua OX=35608 GN=CTI12_AA415840 PE=4 SV=1[more]
A0A438JHT22.6e-0629.06Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_014195 PE=4 SV=1[more]
A0A2U1NKX31.3e-0529.36MuDR family transposase OS=Artemisia annua OX=35608 GN=CTI12_AA253070 PE=4 SV=1[more]
A0A2U1Q3T22.2e-0530.70MuDR family transposase OS=Artemisia annua OX=35608 GN=CTI12_AA052360 PE=4 SV=1[more]
A0A438HFK51.4e-0424.55SWIM-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_044939 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg038082.1Spg038082.1mRNA