Spg038074 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg038074
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold12: 42650688 .. 42650972 (+)
RNA-Seq ExpressionSpg038074
SyntenySpg038074
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCCAATCTGCTTTCCTTTTCGCCATTTTGCTTCTTTTTTGCAGCACCCATTTGCTCGAAGGTTGCAGAATGATGAAAGCGGAGCAACGGGACTGGTCGACGGTGGTGCTCCGGCGGTCGCTGCTAAGGGCGCCGGTTTCTCCTTCTGCAAGAGATCCCGATACCAATATTCCGACAGGGGACCAGAAGAGGGCGGCTTTCGCCGGAAAATCCACGGCGGCGCCGGCACAAGGCTACCCGGCCTCGAAGTCGAACTTAAGTAACAAAATATATGCATGA

mRNA sequence

ATGAAGATCCAATCTGCTTTCCTTTTCGCCATTTTGCTTCTTTTTTGCAGCACCCATTTGCTCGAAGGTTGCAGAATGATGAAAGCGGAGCAACGGGACTGGTCGACGGTGGTGCTCCGGCGGTCGCTGCTAAGGGCGCCGGTTTCTCCTTCTGCAAGAGATCCCGATACCAATATTCCGACAGGGGACCAGAAGAGGGCGGCTTTCGCCGGAAAATCCACGGCGGCGCCGGCACAAGGCTACCCGGCCTCGAAGTCGAACTTAAGTAACAAAATATATGCATGA

Coding sequence (CDS)

ATGAAGATCCAATCTGCTTTCCTTTTCGCCATTTTGCTTCTTTTTTGCAGCACCCATTTGCTCGAAGGTTGCAGAATGATGAAAGCGGAGCAACGGGACTGGTCGACGGTGGTGCTCCGGCGGTCGCTGCTAAGGGCGCCGGTTTCTCCTTCTGCAAGAGATCCCGATACCAATATTCCGACAGGGGACCAGAAGAGGGCGGCTTTCGCCGGAAAATCCACGGCGGCGCCGGCACAAGGCTACCCGGCCTCGAAGTCGAACTTAAGTAACAAAATATATGCATGA

Protein sequence

MKIQSAFLFAILLLFCSTHLLEGCRMMKAEQRDWSTVVLRRSLLRAPVSPSARDPDTNIPTGDQKRAAFAGKSTAAPAQGYPASKSNLSNKIYA
Homology
BLAST of Spg038074 vs. NCBI nr
Match: KAA0025373.1 (hypothetical protein E6C27_scaffold1204G00600 [Cucumis melo var. makuwa] >TYJ95702.1 hypothetical protein E5676_scaffold63958G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 4.3e-11
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 1  MKIQSAFLFAILLLFCSTHLLEGCRMMKAEQRDWSTVVLRRSLLRAPVSPSARDPDTNIP 60
          MKIQ  F FAIL+L  + H L+ CR MK +QR WS +++++SL RAPV PS RD DTNIP
Sbjct: 1  MKIQFTFFFAILVLLANAHHLQSCRTMKDDQRKWS-MLIQQSLQRAPVPPSTRDGDTNIP 60

Query: 61 T--GDQKRAAFAGKSTAAPA 79
             G Q   AFAGKST  PA
Sbjct: 61 VPLGQQ---AFAGKSTVPPA 76

BLAST of Spg038074 vs. NCBI nr
Match: KAG6571504.1 (hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 1  MKIQSAFLFAILLLFCSTHLLEGCRMMKAEQRDWSTVVLRRSLLRAPVSPSARDPDTNIP 60
          MKIQ AFL AIL++  + H L+ CR MK + + WS ++L++SL RAPV P+A++  T IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDPQKWSILLLQQSLQRAPVPPNAKNGGTTIP 60

Query: 61 TGDQKRAAFAGKSTAAPAQGY 82
          T   +R AF GKST +PA  Y
Sbjct: 61 TPLGQR-AFVGKSTPSPAHSY 80

BLAST of Spg038074 vs. NCBI nr
Match: KAG6571501.1 (hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 1  MKIQSAFLFAILLLFCSTHLLEGCRMMKAEQRDWSTVVLRRSLLRAPVSPSARDPDTNIP 60
          MKIQ AFL AIL++  + H L+ CR MK +++ WS ++L++SL R PV PSA++  T IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLKRVPVPPSAQNGGTTIP 60

Query: 61 TGDQKRAAFAGKSTAAPAQGY 82
          T   +R AF GKST +PA  Y
Sbjct: 61 TQLGQR-AFVGKSTPSPAHSY 80

BLAST of Spg038074 vs. NCBI nr
Match: KAG6571506.1 (hypothetical protein SDJN03_28234, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-10
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 0

Query: 1  MKIQSAFLFAILLLFCSTHLLEGCRMMKAEQRDWSTVVLRRSLLRAPVSPSARDPDTNIP 60
          MKIQ AF+ AI L+  + H L+ CR+MK +Q+ WS +VL++SL RAPV PS +D  T IP
Sbjct: 1  MKIQFAFILAIFLVLANVHQLQSCRIMKVDQQKWS-MVLQQSLQRAPVPPSGKDGGTTIP 60

Query: 61 TGDQKRAAFAGKSTAAPAQGYP 83
              +R AFAGK  A PA  YP
Sbjct: 61 VPLGER-AFAGKFMAPPADAYP 80

BLAST of Spg038074 vs. NCBI nr
Match: KAG6571503.1 (hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 3.6e-10
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 1  MKIQSAFLFAILLLFCSTHLLEGCRMMKAEQRDWSTVVLRRSLLRAPVSPSARDPDTNIP 60
          MKIQ AFL AIL++  + H L+ CR MK +++ WS ++L++SL RAPV PSA++  T IP
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSILLLQQSLQRAPVPPSAKNGGTTIP 60

Query: 61 TGDQKRAAFAGKSTAAPAQGY 82
              +R +F GKST +PA  Y
Sbjct: 61 VPLGQR-SFVGKSTPSPAHSY 80

BLAST of Spg038074 vs. ExPASy TrEMBL
Match: A0A5D3B777 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63958G00010 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 1  MKIQSAFLFAILLLFCSTHLLEGCRMMKAEQRDWSTVVLRRSLLRAPVSPSARDPDTNIP 60
          MKIQ  F FAIL+L  + H L+ CR MK +QR WS +++++SL RAPV PS RD DTNIP
Sbjct: 1  MKIQFTFFFAILVLLANAHHLQSCRTMKDDQRKWS-MLIQQSLQRAPVPPSTRDGDTNIP 60

Query: 61 T--GDQKRAAFAGKSTAAPA 79
             G Q   AFAGKST  PA
Sbjct: 61 VPLGQQ---AFAGKSTVPPA 76

BLAST of Spg038074 vs. ExPASy TrEMBL
Match: A0A0A0LCY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.0e-10
Identity = 43/83 (51.81%), Postives = 60/83 (72.29%), Query Frame = 0

Query: 1  MKIQSAFLFAILLLFCSTHLLEGCRMMKAEQRDWS--TVVLRRSLLRAPVSPSARDPDTN 60
          MKIQ +FL AIL+L  +TH L+ CR +K +Q++WS    +L++SL R PV PSA++ DTN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPTGDQKRAAFAGKSTAAPAQGY 82
          IP    +R AFAGK++AA A+ Y
Sbjct: 61 IPVPVGQR-AFAGKTSAALARNY 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0025373.14.3e-1157.50hypothetical protein E6C27_scaffold1204G00600 [Cucumis melo var. makuwa] >TYJ957... [more]
KAG6571504.11.6e-1050.62hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571501.11.6e-1050.62hypothetical protein SDJN03_28229, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571506.12.1e-1052.44hypothetical protein SDJN03_28234, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571503.13.6e-1049.38hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3B7772.1e-1157.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LCY53.0e-1051.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg038074.1Spg038074.1mRNA