Spg037987 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg037987
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description(thale cress) hypothetical protein
Locationscaffold12: 41021564 .. 41025094 (+)
RNA-Seq ExpressionSpg037987
SyntenySpg037987
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGAAGAAGAACTGAGAAGAAGAGAAACAGAGCAAGGGAAAATGGTGTTATGGGAGATTGCATTGGCAACAGCGTATTTCTTGGGACTGAAGCGAACGTTCAAGCTCGCTTTGAAGACTCAGCGACGTCTTGTTTCCCCCAATCACCCTCGGATTCGTCAATTTCTTCACAGGTATTTGTCCTTTCTTTCGCTTGTTCGTCGTATTCTGTTGATCCCAACGCTTCTTAATGTATTTGCGCATTGTCTAGTTGAACGTAATGTCTTTCTATCTATCTTCTTTTTCCTTGGTTCTGTAGAGTTTCAATTAGAGCAATTATTAATGCATATCTGCAATAAATGTGGATAGTTTGTTTGTGGAAGTAAAATTTCGATCCTATATGTTGGAATGAAGTAATTAGCTACAGTTTAAGATACTGATTTTTTTTTACAACATGTGGGGGTGGGGATTCAACCTTCGACCTCTTGGTCGGAATACAAGCTTTATGTCAATTGTGCGATGCTATTGTTCAATTTGGAAGTTCGAATATTCATTCACTAACAAAGGATATGGATTGTTGACGTACTCTTAGTTTTTCTACGTTTTGTGTCGTTTCATATCCCGTGTGCTAAGAAGCTTCAATATTGAACGATCGTTGATGCTCCATCGTGCTGCTTTTTGCATGTGTTTTGTTACAGAATCGAGGCCTCGACATCTGGTTAAACACGATCCGGTGGCAATGGTTGATGAACTAATTATTCTTCAGACGCTTTCTTTCTAGTTACTGGATTGAGGCCTTTACATTTGCTTATTTGCAATCTGGTGAAATAGTTGATGAACTTGTTTATTGGGTTTTGTGGAAGATATACATGGTCTGAGATGTGGAATTCTTCATTTGGGCCTTCATTTCCTCCATGAATAATTTTGGGTAATTAAGTTAGTGAAGTTTCAACCTGGTAACTCCTCTTACCTGAAGGATGAAGTATCGTTTTAGGGACATGTGGTCAATGGTTGAAACTTGTGAACTGCTATTGCAGGGTAAAGAAAGTGAGTAGGATAGACTCTGCCATACTCTTCATTGCCCTGTGCAATAGGCCTGTGAGTACTGTGGTGGTCTTCTTTCTCCTTTGACGAATGGGGGTGTTGAGGGCCCACTCCTTGCATTATATTCATGATCCATCTCCAATAAGTTTGGGGGGGGGGGGGGGGGGGGGGGGTTTGGCCCACCCCCAAGGTCAGCCAGGAGACAATAAAGATTTTAAATTATTAAGAACCTGAAGGGCTTGATCCTCAAATTTTGGAGGGTCTCTCCAAACATGAGTCCTTGACTCCAGGGCACCTTTTGGGGTTGGTAGTGGTCTTCTTTTCCTTCGAAAATTTCCAAAGATAAGTTTGTTGTTTAAAACAATGTCTAGAATGTGGAACAAATTGCTGCAATCAAACGGATTCTCATATTTTAGGTTATGCAATGCCAAGCTTTTCACTTATACCAGTCATTTTTCTTGTCCTTGCATAGGTCTGCTACATGACAATTTCTATTTTTTTTACTCAATTGTTTCTCAGTTAACCTTTGTGCTACAAAACTAGCTAACAGATGTAGAGAAATGCTTATGATATGCCACTTTCTTTCGGATGCTATACCAGAAGATTGCTTTTAAATACACATACAGATTGGCTATTTGGTGTTCAATTAATCGGCTTGTCAATATGACTGCTATCTTAAAGGTTTCACATGATATTTGATTTCATTAACATTTTAGATTTTACTTCTACGTCTTGCCCTTTCTTTTATGTTATAACTTGTAAAATAAATCATACTACAAAGAAATCATGTCATATCAGCGATATCACTGTAGTGTATACTGTATATAATGTTCTCAAAGGGTTTGCGCATGGAGGCTTAGAATCTTTACGCCTCTTACAATGACTAGAAGGATAATATCAACTTATTTTCTGTTCTTCAAAATATAGCATACCACATTAGCTATGCAATACTACTATGACATGAGTTAGTGTAATTGAAGCCTTTACTACTTTTACCATCCTGGCTTACGAAAAACAAAGATTAACTAGTAGGTCAACCCTATTAGTGTTGAGAATCTTCATTGAAGGATGTGATTTTTGTTGTTTCTTTTCAATATCTCCTCAAGGCTGATGTCTTGTCTCTTTTAGGAAAAAGCCTTGAGGCCACCTTTAAACTTTTAAGACATTGATTATATATAGTAGCATAGCAGTGTAGTTTAATTGGCAGGGCTATTTAGCTGTCAGCTCCTCTGTTTTTTATTCCTCTTTTTTTATTTTATCGTGATTATGGAGAGTGAAGACTTCAATATATATCCTTCTTTTGGTGGTACCCTTGAAATTATCCTGTTTTCATATGAAAATGACACATGTAATGGCCTAGGGTGTTGGTAATTATATGATCTTCCTCACTTCATGATTAAGTTTAAGTTTTATGGTAGAACCTTCTTTATGTAAAATCATATAAATATTCAATTCATTGGATCAGCTTCAAGGGCCTAAGTTGCAAAAGTAAAGAAATTTAAGTTGTTTTTAGACCCATATGGCTTCATATTCTACCCACCACTTCTTCATTTGATTCTTGTCAAGCTATACCCTCAAAATTCACTGAGAATGTCTAAGACCTTGAAGCATTGGCTATGCCAATTCTGATCTAATTGATGACATTGTACTGGCTTCTCGATAATTCCACAATAACTGCAGAACTACTAGTACAATATCATTCCTGCTAATCTTTTCTTATTGCAGACGAACACGTGCCGTATTTGATGTTACTGTAAAAGTTCACCAGCACATTCAGCATCGAGATATAGAAGTTGGTAGGAATCTTGGTAGCTGGATTTTGCGATGGCTTAATCGAATGAAACCATCTGCTGAGGTTCATGGACATCCCAATGGCACTATCAAACACATCAAAATGATAAAGCAGGCTTCCAACTCCTCCTACTCGAAACATCGGGCGAGCCCTCGAGTGTTGATTAGTCAGAAATTCAATCAATATATGTCAATTACCTCATCAGTGCACAGATGGCCTAAGCCCTTCCCTACCATTGCAATGATCATGAGGCAGCCAAAGCCTGCTGGGATTACCATTCAACACAGACAATACAGCATCTATGGCTCTGAAGCAATGAAAACAAATTACAGAAGAGGAAGTTTCGGTCATGTTATTCGGGACGATATTATGCAGTGGATGCTCAGAAATTAGAAGAGAAGATGTTTTCTAGTGTCTTCTCCTTGGAGACTAGATTATCTGGCTGACAATACAGTTTATAGTGCAGTATTTAGTTTCCAATTTTGAGCTTGGAGACAATGGAGAGGTTTTCTTTTCTTGTTTTACAATGTTCTGAACATGTTCTTTGAAAAGTTGTACTTGTTGGCAGCCATGTCTTTGCTTTTGAGTAAATTAAAGGTAATGTTTTACTTCTCAAATATGTACCTTTTAGGCCGCTAGCCGTGCCTATAGGCAAGAAATTACATAGCAACATTTTACATTTTTCGTATCTTTATGTCGTATTTACGTTTTTTTCC

mRNA sequence

ATGGTGTTATGGGAGATTGCATTGGCAACAGCGTATTTCTTGGGACTGAAGCGAACGTTCAAGCTCGCTTTGAAGACTCAGCGACGTCTTGTTTCCCCCAATCACCCTCGGATTCGTCAATTTCTTCACAGTTACTGGATTGAGGCCTTTACATTTGCTTATTTGCAATCTGGTGAAATAGTTGATGAACTTGTTTATTGGGTTTTGGTAAAGAAAGTGAGTAGGATAGACTCTGCCATACTCTTCATTGCCCTGTGCAATAGGCCTAAGATTGCTTTTAAATACACATACAGATTGGCTATTTGGTGTTCAATTAATCGGCTTGTCAATATGACTGCTATCTTAAAGAGTGAAGACTTCAATATATATCCTTCTTTTGGTGGTACCCTTGAAATTATCCTGTTTTCATATGAAAATGACACATGTAATGGCCTAGGGTGTTGA

Coding sequence (CDS)

ATGGTGTTATGGGAGATTGCATTGGCAACAGCGTATTTCTTGGGACTGAAGCGAACGTTCAAGCTCGCTTTGAAGACTCAGCGACGTCTTGTTTCCCCCAATCACCCTCGGATTCGTCAATTTCTTCACAGTTACTGGATTGAGGCCTTTACATTTGCTTATTTGCAATCTGGTGAAATAGTTGATGAACTTGTTTATTGGGTTTTGGTAAAGAAAGTGAGTAGGATAGACTCTGCCATACTCTTCATTGCCCTGTGCAATAGGCCTAAGATTGCTTTTAAATACACATACAGATTGGCTATTTGGTGTTCAATTAATCGGCTTGTCAATATGACTGCTATCTTAAAGAGTGAAGACTTCAATATATATCCTTCTTTTGGTGGTACCCTTGAAATTATCCTGTTTTCATATGAAAATGACACATGTAATGGCCTAGGGTGTTGA

Protein sequence

MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPNHPRIRQFLHSYWIEAFTFAYLQSGEIVDELVYWVLVKKVSRIDSAILFIALCNRPKIAFKYTYRLAIWCSINRLVNMTAILKSEDFNIYPSFGGTLEIILFSYENDTCNGLGC
Homology
[Close]
BLAST of Spg037987 vs. NCBI nr
Match: KAG6571645.1 (hypothetical protein SDJN03_28373, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.1 bits (209), Expect = 5.5e-13
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPNHPRIRQFLH 44
          MVLWEIALATAYFLGLKRTFKL LKTQRRLVSPNHPRIR+FLH
Sbjct: 1  MVLWEIALATAYFLGLKRTFKLVLKTQRRLVSPNHPRIRRFLH 43

[Close]
BLAST of Spg037987 vs. NCBI nr
Match: XP_022963557.1 (uncharacterized protein LOC111463851 [Cucurbita moschata])

HSP 1 Score: 85.1 bits (209), Expect = 5.5e-13
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPNHPRIRQFLH 44
          MVLWEIALATAYFLGLKRTFKL LKTQRRLVSPNHPRIR+FLH
Sbjct: 1  MVLWEIALATAYFLGLKRTFKLVLKTQRRLVSPNHPRIRRFLH 43

[Close]
BLAST of Spg037987 vs. NCBI nr
Match: KAG7011374.1 (hypothetical protein SDJN02_26279, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 85.1 bits (209), Expect = 5.5e-13
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPNHPRIRQFLH 44
          MVLWEIALATAYFLGLKRTFKL LKTQRRLVSPNHPRIR+FLH
Sbjct: 1  MVLWEIALATAYFLGLKRTFKLVLKTQRRLVSPNHPRIRRFLH 43

[Close]
BLAST of Spg037987 vs. NCBI nr
Match: XP_022967340.1 (uncharacterized protein LOC111466890 [Cucurbita maxima])

HSP 1 Score: 85.1 bits (209), Expect = 5.5e-13
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPNHPRIRQFLH 44
          MVLWEIALATAYFLGLKRTFKL LKTQRRLVSPNHPRIR+FLH
Sbjct: 1  MVLWEIALATAYFLGLKRTFKLVLKTQRRLVSPNHPRIRRFLH 43

[Close]
BLAST of Spg037987 vs. NCBI nr
Match: XP_023511569.1 (uncharacterized protein LOC111776368 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-12
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPNHPRIRQFLH 44
          MVLWEIALATAYFLGLK+TFKL LKTQRRLVSPNHPRIR+FLH
Sbjct: 1  MVLWEIALATAYFLGLKKTFKLVLKTQRRLVSPNHPRIRRFLH 43

[Close]
BLAST of Spg037987 vs. ExPASy TrEMBL
Match: A0A6J1HU73 (uncharacterized protein LOC111466890 OS=Cucurbita maxima OX=3661 GN=LOC111466890 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPNHPRIRQFLH 44
          MVLWEIALATAYFLGLKRTFKL LKTQRRLVSPNHPRIR+FLH
Sbjct: 1  MVLWEIALATAYFLGLKRTFKLVLKTQRRLVSPNHPRIRRFLH 43

[Close]
BLAST of Spg037987 vs. ExPASy TrEMBL
Match: A0A6J1HFJ9 (uncharacterized protein LOC111463851 OS=Cucurbita moschata OX=3662 GN=LOC111463851 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 1  MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPNHPRIRQFLH 44
          MVLWEIALATAYFLGLKRTFKL LKTQRRLVSPNHPRIR+FLH
Sbjct: 1  MVLWEIALATAYFLGLKRTFKLVLKTQRRLVSPNHPRIRRFLH 43

[Close]
BLAST of Spg037987 vs. ExPASy TrEMBL
Match: A0A078H1N3 (BnaA05g08560D protein OS=Brassica napus OX=3708 GN=BnaA05g08560D PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.9e-12
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 1  MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPNHPRIRQFLHSYWIEAFTFA 54
          MVLWE+AL TAYFLGL+R+++LALKTQRRLVSPNHPRIRQFLH    + F  A
Sbjct: 1  MVLWELALGTAYFLGLRRSYRLALKTQRRLVSPNHPRIRQFLHRRTHQIFDVA 53

[Close]
BLAST of Spg037987 vs. ExPASy TrEMBL
Match: A0A3P5ZBW0 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA05T19965Z PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.9e-12
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 1  MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPNHPRIRQFLHSYWIEAFTFA 54
          MVLWE+AL TAYFLGL+R+++LALKTQRRLVSPNHPRIRQFLH    + F  A
Sbjct: 1  MVLWELALGTAYFLGLRRSYRLALKTQRRLVSPNHPRIRQFLHRRTHQIFDVA 53

[Close]
BLAST of Spg037987 vs. ExPASy TrEMBL
Match: A0A6J1E2E5 (uncharacterized protein LOC111025863 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111025863 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.8e-12
Identity = 51/107 (47.66%), Postives = 65/107 (60.75%), Query Frame = 0 

Query: 1   MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPNHPRIRQFLHSYWIEAFTFAYLQSGEI 60
           MVLWEI LATAYFLGLKRT+KLALK QRRLVSP HPRIRQFL       F  A ++  + 
Sbjct: 1   MVLWEITLATAYFLGLKRTYKLALKIQRRLVSPKHPRIRQFLRGRTRSIFDVA-VKVHQN 60

Query: 61  VDELVYWVLVKKVSRIDSAILFIALCNRPKIAFKYTYRLAIWCSINR 108
           V      V +K + ++ ++ L      R  I+ K+   ++I  SI R
Sbjct: 61  VQHQDIEVGMKMIKQVSNSYLKHRASPRAVISQKFDQYMSITSSIRR 106

[Close]
BLAST of Spg037987 vs. TAIR 10
Match: AT2G35480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32260.1); Has 47 Blast hits to 47 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.6 bits (192), Expect = 4.8e-15
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 1  MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPNHPRIRQFLHSYWIEAFTFA 54
          MVLWE+AL TAYFLG++RT++LALKTQRRLVSP HPRIR F+H    + F  A
Sbjct: 1  MVLWELALGTAYFLGIRRTYRLALKTQRRLVSPKHPRIRDFMHRRTYQIFDMA 53

[Close]
BLAST of Spg037987 vs. TAIR 10
Match: AT1G32260.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35480.1); Has 48 Blast hits to 48 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-13
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 0 

Query: 1  MVLWEIALATAYFLGLKRTFKLALKTQRRLVSPNHPRIRQFLH 44
          MV WEI L TAYFLGL+RT++LALK QRRLV+P HP+IRQFLH
Sbjct: 1  MVFWEITLGTAYFLGLRRTYRLALKIQRRLVTPKHPKIRQFLH 43

The following BLAST results are available for this feature:
BLAST of Spg037987 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571645.15.5e-1395.35hypothetical protein SDJN03_28373, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022963557.15.5e-1395.35uncharacterized protein LOC111463851 [Cucurbita moschata][more]
KAG7011374.15.5e-1395.35hypothetical protein SDJN02_26279, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022967340.15.5e-1395.35uncharacterized protein LOC111466890 [Cucurbita maxima][more]
XP_023511569.11.2e-1293.02uncharacterized protein LOC111776368 [Cucurbita pepo subsp. pepo][more]
BLAST of Spg037987 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg037987 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HU732.6e-1395.35uncharacterized protein LOC111466890 OS=Cucurbita maxima OX=3661 GN=LOC111466890... [more]
A0A6J1HFJ92.6e-1395.35uncharacterized protein LOC111463851 OS=Cucurbita moschata OX=3662 GN=LOC1114638... [more]
A0A078H1N32.9e-1273.58BnaA05g08560D protein OS=Brassica napus OX=3708 GN=BnaA05g08560D PE=4 SV=1[more]
A0A3P5ZBW02.9e-1273.58Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA05T19965Z PE=4 SV=... [more]
A0A6J1E2E53.8e-1247.66uncharacterized protein LOC111025863 isoform X2 OS=Momordica charantia OX=3673 G... [more]
BLAST of Spg037987 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G35480.14.8e-1567.92unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G32260.12.0e-1376.74unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35998FAMILY NOT NAMEDcoord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg037987.1Spg037987.1mRNA