Spg037903 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg037903
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Location	scaffold12: 41999744 .. 42004288 (-)
RNA-Seq Expression	Spg037903
Synteny	Spg037903

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAATGGTGCGGCAAATTCTGGGTATCGTGGCGCCATCGAGACCATCCCTCGAAAATTTGCTTCCATTGATCGACAAACTGAGAAGCTACCTCACATGTCAAGTGTCAGTTTCTCGAGTGGTCAATCATGGTGCTTTCCATGGCGAACATTTCCTCCTGCAACAACATTGGTCGACCTCCACAAATTCCTTCTTTTCACAGCCACAACGCTCACAATTTCGAATTCTTTCGCCGTTTCTGCTGCCATGTTCATCGGAAGACAGCCTCGTTTCCTCTTGGCCCTAGGCTAGCGGAGTCGCTTCGTTCTCTTCAGCACACGAGACGGAATTTAGCTAACTTCACTTGCTCCGCTGCTGATAAACCGGAAATCAGGTTGTTCTTTCTCTCTGTGTTTCATGATTTTAATGTTATTGTGAATTTTGTTTCTAAGCACTTGAAATTTGGCTGATGTTCTTCCAATGGCCTCTCAGAGGAATGAACTTTAATGCAATTATTTGTGGTTGCATTTGATTTTCATAATTTTCTGTTATTTTTCTTTTGTACATTAGAGTGACTGTATGTTTGGACGGCCAATAACCGACATAAATTTGTGGAAACTAGGAGGTTTGATCATGCCTGGATTCTTATATGAATTTTTCATTCGTGTGTTTCTCTCTATTCCAATCGAATATCATATTTGGTGACTTCTTCATGTTATATATGCCTTGAGCTACAAAGCTTGTCTGTGTTTCTCATCTATGTTAGATGATCACAACTTGATTTGCATGCACAAATCTATAGACAGTCAAGCTGTTTGATCAAAACATAAGGTTCCAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGTTCAACTACATTTGGGGGAGGATTCGAACCTCTGACTTCTTGGTTGAGGGTACATGCCAATTACCATTGAATTATGCTTGCTTTGGCAACATAAGGTTCAAATTTGAGCGAGTATGAAGTAATCAACTAAAAGCATCCTAGGTCTAAGTTGTCAATAAGGTTCATGTAAATAATAAGGGGTATGAGAAATGGGTTCAAGTTATGGTAGCCACCTACCTAGAATTTAATATCCTACAAGTTACTTTGGCAACTAAATGAAACAGGGTCAATTTGTCTCGTGAAACTAGTTGAGCACAAGTTCGTCAGGACATTCACGGATATTAAAAAAACTAATCAAACTAATAGAAACCATTACATTAAAGAATGCATTGGAATGTTTGATTAGGAGAATAACTCATTCTAGTCTTCGTTCTTATTACAAACAATGGTACTTACATTCCTTTAATATTGTGTCTATTTTTTGGAGGTTGAGACTCAAGTGGAGAGGAGGGCTGGTGTAGTCTTATTGGTTGTGTTCTAACCTAGTGTATTTTTTTCAGTACACCTGCTATTCAACCTGAAATGAGGCTTTGTGTAACTGTATCTGGTTTTTATTTAGTTCCACAGCCAAGATAAGAAGTGAAGTCCTCTCTCCTTTTCGGTCGGTTCGGATGTTCTTTTATCTCACTTTCATTGCCAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAATCCATCAAGAGCTGAAGATGTCCCTGATATTCTAAAAGGACTTGGAATAGACTTCGGAGCTGTAGCTCTTTTTGCATTTCTTTATTTCAGGGAGAACAATGCAAAAAATGCTCAATTAGCAAGACTATCGAGAGAAGAAAGCCTTTCCAATCTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCTATTAGCACTCTCCGTGGGATTGCTCGTCTGGTTATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTCGAACGGGGCGTGTTAGTCGTACCCTTTGCCACGGATGCTAGTTCACTGAATTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATCTAACCACCAAAAGAAAAAGACTGTGGCGGTTGACTCCAGTTTACATGCCTGAGTGGTCGGCGTAAGTAATTATAATTATCATCCATTTTCGCATTGTTTCTCTCCTCCTCTCCCTTCTCATTTTCCTTTTCTTGTGAACAATAGTTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCTGTGTAAGTCGTCCTAACTTTGAATTTAAATTGACGAAGTAAAATGGTCGCATTCTTAATGCTTAAACTCCCAATCAAGTTGTAGTAATAATTATTTTCTTATTTACATAGTTCTTTCAATGAAATAAATTGTCTTTTTAAACTAAAATTACAAGTTTAGTCCTAGACCCCGTTTGATAACCATTTGGTTTTTGGTTTTTGAAAATTAAGCTTGTTTTCTATCAATTTCCTTACCATGGTTTTTATGTTTGTGAATGACACATTTGAATTCCTAGCCAAATTCCAAAAACAAAAACAAGTTTTTGAAAACTATTTTTTTTCGAAAACTTGACTTGGTTTTTGAAAACATGGGAAGAAGGTATATAACAAAACCAAGAAACTTAGTGGTGGATGTAGTGTTTTTAAGCTTAATTTTCAAAAACCAAATGGTTATCAAATGGGGCCTAAACTTTCAGGTTGTGTCTAATAGATCTTTGCACTTTGAAAAGTTTATAATAAGTTCTTGAACTTTCAATTTTGTGTTTGTTAGGTTATTGAACTTTAAAAGTGTCTAATAGATCTCTTTAACTTTCAATTTTGTGTCTAATAGGTTTTTGACATATTCAACCTTTCTAAGGATCTATTAAACAATTTAGTGTATTATAGGACTTTAGACTTTCGATTTTGTATACAATATTGAATTTTAAAAAATGTCTAATAGGCCAAGAACCTATTAGACACAAAATTGAAAGTTCGGAAACATATTAGAAACTTTTAAAGTTTAAAGACCTATTAGACACAAACTTGAAACTTCATAGACTAAACTTGTAATTTAACTTTTCTTTAATCATAAGTTATCCAATTTGGAGACTCCATAGTTGGTATATCATGTAACTGCACAGAGAGAGAAAAGGAAAGAACATAAACTTTATTGATGAATCCATGCCAAAACTAGTTCACCTTACAGAAGTTAATGAATTTGTTATCGTTCGTAGCTAGTTATGTTATTATTTGTTCTTGCAGGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGCGTTGGCTATCCTCCATGGAATGCTCTTGTTGCACAATTACCACCTGTTAAAGGACTATGGTCAGGTCTTCTAGATGGAATGGATGGGAGAGTTCTTTGAAGAAAAACACTTGCTCTTTTCACAGTTAGTACTCTTTTAACCTAACCTGTTGCCATTATTGCACGCTTTTACTATTCATTTGAAACCATTATCTTGCTTCTTGTGGTCGTATATCTGTCATTTTTTACTGATTGAGACTGAAGTTAAAATTGGGTTAAAATACGATTTTGGTCCCTCTACTTCGGATCTCATTTCATTTTAGTCCTTATACTTTCTAACATCCAAATTTTGTCCCTATAATTTTGATAAATCTTAAAATTAGTCCCTATTGTTACTTTGAAGTTTAATTTTTATCGAAATTGGTATAATGATGGTAATAATTTCAATTCAAGGAAAGACACAATATGAATATGAATATGTTTTCAAAATTTATAGGTCAATATAGTCTAAATTGTTTTGAGAAAAGTTAACTATAAACTAACATTAGGATTACTTTTAAGATTGATTCACAGTACAGTGACTAAAGTAGAACAAGTGAACAAGTCTCAAAGTATGGGGACTAAAAAGGTATTTTAACCTTAAAATTTTCTTTGTGATATCCTTTTGAGCTGGCACCAAACTTCCATATCTAATTCGAGTCCTATTTAATTTCAACTTTCAAGGAACTACAGAATCTCCTGTCAATATATATACATGAACGGGTTCAACTTTTTTAAGAAATAAGGTCAGTAATAATGTTGTCACGTCAGTAATTTTGGCCTTTTCTTGTATAAGAACTTAATGTCAAACTATACGGCAGAATCATATCGTATAATTCAACTGTGTTGCTGAGTTTCTTGCTCCAAACAGGAAGATTGTATTGATTTGTTCTAGTTTTCAACTTTCTGCTTAAACAGATACTCTGAAATGGAGCTTCTGAAAACTTTTACCATGGAGTGGAGTAAATTTTTGCTATCATCTTTAATTCATCCTGAACAAAGCCACTGTAAAAAAGCTCCAACACCATTGTCATGCTGGACTGCCTGAGAAATGGAACTGAATCTCATGACAGCAGAAATACAGGTTTTTGTAAAGAGATAAAAGGAGAAATTTAGCTTATCTGACATCATGGATTTTATTTTTGATCTAGACTCCAATATTCTTAGTTATTAGTCATTATTGTTCCATTAATTATATTGTATAGCGATTTATTATTTGTTAGTTGAATGTGTATTTTAGTGCACTCAGTAAATGGTAATGAAGCGATTACACATTTTTCATTCAATAGTACTTTGTTGATCGATGTGGTACCAGACCAGGACGTAAGT

mRNA sequence

ATGGTGCTTTCCATGGCGAACATTTCCTCCTGCAACAACATTGGTCGACCTCCACAAATTCCTTCTTTTCACAGCCACAACGCTCACAATTTCGAATTCTTTCGCCGTTTCTGCTGCCATGTTCATCGGAAGACAGCCTCGTTTCCTCTTGGCCCTAGGCTAGCGGAGTCGCTTCGTTCTCTTCAGCACACGAGACGGAATTTAGCTAACTTCACTTGCTCCGCTGCTGATAAACCGGAAATCAGTTCCACAGCCAAGATAAGAAGTGAAGTCCTCTCTCCTTTTCGGTCGGTTCGGATGTTCTTTTATCTCACTTTCATTGCCAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAATCCATCAAGAGCTGAAGATGTCCCTGATATTCTAAAAGGACTTGGAATAGACTTCGGAGCTGTAGCTCTTTTTGCATTTCTTTATTTCAGGGAGAACAATGCAAAAAATGCTCAATTAGCAAGACTATCGAGAGAAGAAAGCCTTTCCAATCTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCTATTAGCACTCTCCGTGGGATTGCTCGTCTGGTTATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTCGAACGGGGCGTGTTAGTCGTACCCTTTGCCACGGATGCTAGTTCACTGAATTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATCTAACCACCAAAAGAAAAAGACTGTGGCGGTTGACTCCAGTTTACATGCCTGAGTGGTCGGCTTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCTGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGCGTTGGCTATCCTCCATGGAATGCTCTTGTTGCACAATTACCACCTGTTAAAGGACTATGGTCAGGTCTTCTAGATGGAATGGATGGGAGAGTTCTTTGA

Coding sequence (CDS)

ATGGTGCTTTCCATGGCGAACATTTCCTCCTGCAACAACATTGGTCGACCTCCACAAATTCCTTCTTTTCACAGCCACAACGCTCACAATTTCGAATTCTTTCGCCGTTTCTGCTGCCATGTTCATCGGAAGACAGCCTCGTTTCCTCTTGGCCCTAGGCTAGCGGAGTCGCTTCGTTCTCTTCAGCACACGAGACGGAATTTAGCTAACTTCACTTGCTCCGCTGCTGATAAACCGGAAATCAGTTCCACAGCCAAGATAAGAAGTGAAGTCCTCTCTCCTTTTCGGTCGGTTCGGATGTTCTTTTATCTCACTTTCATTGCCAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAATCCATCAAGAGCTGAAGATGTCCCTGATATTCTAAAAGGACTTGGAATAGACTTCGGAGCTGTAGCTCTTTTTGCATTTCTTTATTTCAGGGAGAACAATGCAAAAAATGCTCAATTAGCAAGACTATCGAGAGAAGAAAGCCTTTCCAATCTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCTATTAGCACTCTCCGTGGGATTGCTCGTCTGGTTATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTCGAACGGGGCGTGTTAGTCGTACCCTTTGCCACGGATGCTAGTTCACTGAATTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATCTAACCACCAAAAGAAAAAGACTGTGGCGGTTGACTCCAGTTTACATGCCTGAGTGGTCGGCTTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCTGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGCGGCGTTGGCTATCCTCCATGGAATGCTCTTGTTGCACAATTACCACCTGTTAAAGGACTATGGTCAGGTCTTCTAGATGGAATGGATGGGAGAGTTCTTTGA

Protein sequence

MVLSMANISSCNNIGRPPQIPSFHSHNAHNFEFFRRFCCHVHRKTASFPLGPRLAESLRSLQHTRRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANPSRAEDVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPFATDASSLNFEFDEREEVKDLTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

Homology

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BLAST of Spg037903 vs. NCBI nr
Match: XP_022131239.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia] >XP_022131240.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia])

HSP 1 Score: 590.5 bits (1521), Expect = 9.1e-165
Identity = 297/336 (88.39%), Postives = 312/336 (92.86%), Query Frame = 0


Query: 1   MVLSMANISSCNNIGRPPQIPSFHSHNAHNFEFFRRFCCHVHRKTASFPLGPRLAESLRS 60
           MV+SMANISS NN G PP  P   SHNAHNF+F+R  CC VH KT  F  GP LAESLR 
Sbjct: 1   MVVSMANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLRX 60

Query: 61  LQHTRRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120
           LQ  RRNLANFTCSAA+KPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ
Sbjct: 61  LQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120

Query: 121 LLAALANPSRAEDVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180
           LLAALAN SRAE VPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL
Sbjct: 121 LLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180

Query: 181 RVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPFATDASSL 240
           RVDQ+KVIP+ +LRGIARLVICAGPESFIMEAF+SSEPFTE+LLERGV+VVPFATD SSL
Sbjct: 181 RVDQSKVIPLXSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSL 240

Query: 241 NFEFDEREEVKDLTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRV 300
           NFEFDERE++KD+TTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVS++SPVYLSLRMDGRV
Sbjct: 241 NFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRV 300

Query: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 337
           RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of Spg037903 vs. NCBI nr
Match: XP_022963501.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_022963502.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 589.0 bits (1517), Expect = 2.7e-164
Identity = 296/336 (88.10%), Postives = 310/336 (92.26%), Query Frame = 0


Query: 1   MVLSMANISSCNNIGRPPQIPSFHSHNAHNFEFFRRFCCHVHRKTASFPLGPRLAESLRS 60
           MV+SMA I SCNN GRPP      SHNA N +F RR CCHVHR   SF  GP +A+SLR 
Sbjct: 45  MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNPVSFNFGPSVADSLRY 104

Query: 61  LQHTRRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120
           LQ+ RRNLA+ TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ
Sbjct: 105 LQYRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 164

Query: 121 LLAALANPSRAEDVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180
           LLAALAN SRAE+VPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL
Sbjct: 165 LLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 224

Query: 181 RVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPFATDASSL 240
           RVDQNKVI ISTLRGIARLVICAGPESFIMEAFK+SEPFTERLLERGVLV+PFATDASSL
Sbjct: 225 RVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSL 284

Query: 241 NFEFDEREEVKDLTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRV 300
           NFEFDEREE+KD+TTKRKRLWRLTPVYM +WSAWLD+QKKLAGVSSDSPVYLSLRMDGRV
Sbjct: 285 NFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRV 344

Query: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 337
           RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 345 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]

BLAST of Spg037903 vs. NCBI nr
Match: XP_022967293.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima] >XP_022967294.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 588.2 bits (1515), Expect = 4.5e-164
Identity = 295/336 (87.80%), Postives = 309/336 (91.96%), Query Frame = 0


Query: 1   MVLSMANISSCNNIGRPPQIPSFHSHNAHNFEFFRRFCCHVHRKTASFPLGPRLAESLRS 60
           MV+SMA I SCNN GRPP      SHNAHN +F RR CCHVHR   SF  GP +A+SLR 
Sbjct: 1   MVVSMAIIPSCNNFGRPPHCSRTRSHNAHNLKFCRRICCHVHRNPVSFNFGPSVADSLRY 60

Query: 61  LQHTRRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120
           LQ+ RRNLA+ TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ
Sbjct: 61  LQYRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120

Query: 121 LLAALANPSRAEDVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180
           LLAALAN SRAE+VPDIL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKL
Sbjct: 121 LLAALANTSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLARLSREESLSNLKL 180

Query: 181 RVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPFATDASSL 240
           RVDQNKVI ISTLRGIARLVICAGPES IMEAFK+SEPFTERLLERGVLV+PFATDASSL
Sbjct: 181 RVDQNKVITISTLRGIARLVICAGPESLIMEAFKTSEPFTERLLERGVLVIPFATDASSL 240

Query: 241 NFEFDEREEVKDLTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRV 300
           NFEFDEREE+KD+TTKRKRLWRLTPVYM +WSAWLD+QKKLAGVSSDSPVYLSLRMDGRV
Sbjct: 241 NFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRV 300

Query: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 337
           RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of Spg037903 vs. NCBI nr
Match: XP_023554665.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023554666.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 587.4 bits (1513), Expect = 7.7e-164
Identity = 295/336 (87.80%), Postives = 309/336 (91.96%), Query Frame = 0


Query: 1   MVLSMANISSCNNIGRPPQIPSFHSHNAHNFEFFRRFCCHVHRKTASFPLGPRLAESLRS 60
           MV+SMA I SCNN GRPP      SHNA N +F RR CCHVHR   SF  GP +A+SLR 
Sbjct: 45  MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSLRY 104

Query: 61  LQHTRRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120
           LQ+ RRNLA+ TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ
Sbjct: 105 LQYRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 164

Query: 121 LLAALANPSRAEDVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180
           LLAALAN SRAE+VPDIL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKL
Sbjct: 165 LLAALANSSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLARLSREESLSNLKL 224

Query: 181 RVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPFATDASSL 240
           RVDQNKVI ISTLRGIARLVICAGPESFIMEAFK+SEPFTERLLERGVLV+PFATDASSL
Sbjct: 225 RVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSL 284

Query: 241 NFEFDEREEVKDLTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRV 300
           NFEFDEREE+KD+TTKRKRLWRLTPVYM +WSAWLD+QKKLAGVSSDSPVYLSLRMDGRV
Sbjct: 285 NFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRV 344

Query: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 337
           RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 345 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]

BLAST of Spg037903 vs. NCBI nr
Match: XP_038888898.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 583.9 bits (1504), Expect = 8.6e-163
Identity = 299/334 (89.52%), Postives = 306/334 (91.62%), Query Frame = 0


Query: 3   LSMANISSCNNIGRPPQIPSFHSHNAHNFEFFRRFCCHVHRKTASFPLGPRLAESLRSLQ 62
           LS  NISSCNNI RPP     H     +F+F RR CCHVHRKT SF   P L +SL SL 
Sbjct: 5   LSTPNISSCNNITRPP-----HFSRTSDFKFRRRICCHVHRKTLSFNSSPTLPDSLPSLH 64

Query: 63  HTRRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL 122
           + RRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL
Sbjct: 65  YARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL 124

Query: 123 AALANPSRAEDVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV 182
           AALAN SRAE+VPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV
Sbjct: 125 AALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV 184

Query: 183 DQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPFATDASSLNF 242
           DQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVP ATD S+LNF
Sbjct: 185 DQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLNF 244

Query: 243 EFDEREEVKDLTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 302
           EFDEREEVKD+TTKRKRLWRLTPVYM EWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG
Sbjct: 245 EFDEREEVKDMTTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 304

Query: 303 SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 337
           SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 305 SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 333

[Close]

BLAST of Spg037903 vs. ExPASy Swiss-Prot
Match: Q9SRY4 (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA1 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.1e-31
Identity = 83/265 (31.32%), Postives = 130/265 (49.06%), Query Frame = 0


Query: 86  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANPSRAEDVPDILKGLGIDF 145
           K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A ++ +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 146 GAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP 205
           G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 206 ESFIMEAFKSSEPFTERLLERGVLVVPF---------------------ATDASSLNFEF 265
           +  +  A + ++ F   LL RGVL+VP                      AT   S+  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 266 DEREE--VKDLTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 325
           D R +  V     K +  ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

Query: 326 SGVGYPPWNALVAQLPPVKGLWSGL 328
           SG G P W  +  +LPP+  + S L
Sbjct: 427 SGRGMPDWAEISKELPPMDDVLSKL 451

[Close]

BLAST of Spg037903 vs. ExPASy TrEMBL
Match: A0A6J1BP58 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004502 PE=4 SV=1)

HSP 1 Score: 590.5 bits (1521), Expect = 4.4e-165
Identity = 297/336 (88.39%), Postives = 312/336 (92.86%), Query Frame = 0


Query: 1   MVLSMANISSCNNIGRPPQIPSFHSHNAHNFEFFRRFCCHVHRKTASFPLGPRLAESLRS 60
           MV+SMANISS NN G PP  P   SHNAHNF+F+R  CC VH KT  F  GP LAESLR 
Sbjct: 1   MVVSMANISSFNNTGPPPHSPRTRSHNAHNFKFYRLICCRVHWKTVFFSSGPSLAESLRX 60

Query: 61  LQHTRRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120
           LQ  RRNLANFTCSAA+KPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ
Sbjct: 61  LQPMRRNLANFTCSAAEKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120

Query: 121 LLAALANPSRAEDVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180
           LLAALAN SRAE VPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL
Sbjct: 121 LLAALANSSRAEQVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180

Query: 181 RVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPFATDASSL 240
           RVDQ+KVIP+ +LRGIARLVICAGPESFIMEAF+SSEPFTE+LLERGV+VVPFATD SSL
Sbjct: 181 RVDQSKVIPLXSLRGIARLVICAGPESFIMEAFRSSEPFTEQLLERGVVVVPFATDVSSL 240

Query: 241 NFEFDEREEVKDLTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRV 300
           NFEFDERE++KD+TTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVS++SPVYLSLRMDGRV
Sbjct: 241 NFEFDEREDLKDVTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSTESPVYLSLRMDGRV 300

Query: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 337
           RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of Spg037903 vs. ExPASy TrEMBL
Match: A0A6J1HGA1 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463810 PE=4 SV=1)

HSP 1 Score: 589.0 bits (1517), Expect = 1.3e-164
Identity = 296/336 (88.10%), Postives = 310/336 (92.26%), Query Frame = 0


Query: 1   MVLSMANISSCNNIGRPPQIPSFHSHNAHNFEFFRRFCCHVHRKTASFPLGPRLAESLRS 60
           MV+SMA I SCNN GRPP      SHNA N +F RR CCHVHR   SF  GP +A+SLR 
Sbjct: 45  MVVSMAIIPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNPVSFNFGPSVADSLRY 104

Query: 61  LQHTRRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120
           LQ+ RRNLA+ TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ
Sbjct: 105 LQYRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 164

Query: 121 LLAALANPSRAEDVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180
           LLAALAN SRAE+VPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL
Sbjct: 165 LLAALANSSRAEEVPDILNGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 224

Query: 181 RVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPFATDASSL 240
           RVDQNKVI ISTLRGIARLVICAGPESFIMEAFK+SEPFTERLLERGVLV+PFATDASSL
Sbjct: 225 RVDQNKVITISTLRGIARLVICAGPESFIMEAFKTSEPFTERLLERGVLVIPFATDASSL 284

Query: 241 NFEFDEREEVKDLTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRV 300
           NFEFDEREE+KD+TTKRKRLWRLTPVYM +WSAWLD+QKKLAGVSSDSPVYLSLRMDGRV
Sbjct: 285 NFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRV 344

Query: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 337
           RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 345 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 380

[Close]

BLAST of Spg037903 vs. ExPASy TrEMBL
Match: A0A6J1HWD0 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466857 PE=4 SV=1)

HSP 1 Score: 588.2 bits (1515), Expect = 2.2e-164
Identity = 295/336 (87.80%), Postives = 309/336 (91.96%), Query Frame = 0


Query: 1   MVLSMANISSCNNIGRPPQIPSFHSHNAHNFEFFRRFCCHVHRKTASFPLGPRLAESLRS 60
           MV+SMA I SCNN GRPP      SHNAHN +F RR CCHVHR   SF  GP +A+SLR 
Sbjct: 1   MVVSMAIIPSCNNFGRPPHCSRTRSHNAHNLKFCRRICCHVHRNPVSFNFGPSVADSLRY 60

Query: 61  LQHTRRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120
           LQ+ RRNLA+ TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ
Sbjct: 61  LQYRRRNLASVTCSASDKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQ 120

Query: 121 LLAALANPSRAEDVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKL 180
           LLAALAN SRAE+VPDIL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKL
Sbjct: 121 LLAALANTSRAEEVPDILNGLGIDFGAVAFFAFLYFRENNAKNAQLARLSREESLSNLKL 180

Query: 181 RVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPFATDASSL 240
           RVDQNKVI ISTLRGIARLVICAGPES IMEAFK+SEPFTERLLERGVLV+PFATDASSL
Sbjct: 181 RVDQNKVITISTLRGIARLVICAGPESLIMEAFKTSEPFTERLLERGVLVIPFATDASSL 240

Query: 241 NFEFDEREEVKDLTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRV 300
           NFEFDEREE+KD+TTKRKRLWRLTPVYM +WSAWLD+QKKLAGVSSDSPVYLSLRMDGRV
Sbjct: 241 NFEFDEREEMKDITTKRKRLWRLTPVYMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRV 300

Query: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 337
           RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 301 RGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 336

[Close]

BLAST of Spg037903 vs. ExPASy TrEMBL
Match: A0A0A0L902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1)

HSP 1 Score: 562.0 bits (1447), Expect = 1.7e-156
Identity = 286/330 (86.67%), Postives = 300/330 (90.91%), Query Frame = 0


Query: 7   NISSCNNIGRPPQIPSFHSHNAHNFEFFRRFCCHVHRKTASFPLGPRLAESLRSLQHTRR 66
           +ISS NNI  PP      SHNA +F+F RR  C VHRKT SF   PRL  SLR L + RR
Sbjct: 9   SISSFNNIAPPPHFSPTPSHNASDFKFRRRSYCRVHRKTVSFSSSPRLPVSLRFLVYGRR 68

Query: 67  NLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALA 126
           NLANF CSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL ALA
Sbjct: 69  NLANFICSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALA 128

Query: 127 NPSRAEDVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNK 186
           N SRA++VPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNK
Sbjct: 129 NSSRADEVPDILEGLGVDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNK 188

Query: 187 VIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPFATDASSLNFEFDE 246
           VIPIS LRGIARLVICAGPESFI+EAFKSSEPFTERLLERGVLVVP ATD ++LNFEFD+
Sbjct: 189 VIPISILRGIARLVICAGPESFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDD 248

Query: 247 REEVKDLTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVG 306
           REEVKD+TTKRKRLWRLTPVYM EWSAWLDEQKKLAGV+SDSPVYLSLRMDGRVRGSGVG
Sbjct: 249 REEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVG 308

Query: 307 YPPWNALVAQLPPVKGLWSGLLDGMDGRVL 337
           YPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 309 YPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of Spg037903 vs. ExPASy TrEMBL
Match: A0A5D3BG35 (Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00670 PE=4 SV=1)

HSP 1 Score: 559.3 bits (1440), Expect = 1.1e-155
Identity = 286/334 (85.63%), Postives = 301/334 (90.12%), Query Frame = 0


Query: 3   LSMANISSCNNIGRPPQIPSFHSHNAHNFEFFRRFCCHVHRKTASFPLGPRLAESLRSLQ 62
           LS   +SS NNI  PP      SHNA +F+F RR C HVHRKT SF   PRL  SLR   
Sbjct: 5   LSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSLRFHV 64

Query: 63  HTRRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL 122
           + RRNLAN+  SAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL
Sbjct: 65  YGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL 124

Query: 123 AALANPSRAEDVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV 182
            ALAN SRA++VPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV
Sbjct: 125 GALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRV 184

Query: 183 DQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPFATDASSLNF 242
           DQNKVIPISTLRGIARLVICAGPESF++EAFKSSEPFTE+LLERGVLVVP ATD ++LNF
Sbjct: 185 DQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNF 244

Query: 243 EFDEREEVKDLTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 302
           EFDEREEVKD+T+KRK+LWRLTPVYM EWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG
Sbjct: 245 EFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 304

Query: 303 SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 337
           SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Sbjct: 305 SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL 338

[Close]

BLAST of Spg037903 vs. TAIR 10
Match: AT4G28740.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 374.4 bits (960), Expect = 9.6e-104
Identity = 194/307 (63.19%), Postives = 239/307 (77.85%), Query Frame = 0


Query: 35  RRFCCHVHRKTASFPLGPRLAESLRSLQHTRRNLA---NFTCSAADKP-EISSTAKIRSE 94
           RR   H HR+   F      +     L  TR+      N  C AAD+P EIS+ A+IRSE
Sbjct: 47  RRISRHNHRERLDF------SHRNHRLTITRKQQPLSFNTVCFAADEPSEISADARIRSE 106

Query: 95  VLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANPSRAEDVPDILKGLGIDFGAVAL 154
           VLSPFRSVRMFFYL FIASG+LGGLIAT++L+ ALANP+R+ +V +I+KGLG+D GA +L
Sbjct: 107 VLSPFRSVRMFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGVDIGAASL 166

Query: 155 FAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ-NKVIPISTLRGIARLVICAGPESFI 214
           FAFLYF EN  KNAQ+ARLSREE+L  LK+RV++ NKVI +  LRG+ARLVICAGP  FI
Sbjct: 167 FAFLYFNENKTKNAQMARLSREENLGKLKMRVEENNKVISVGDLRGVARLVICAGPAEFI 226

Query: 215 MEAFKSSEPFTERLLERGVLVVPFATDASSLNFEFDEREEV-KDLTTKRKRLWRLTPVYM 274
            EAFK S+ +T+ L+ERGV+VV +ATD +S   EFDE +   ++++ +RK+LWR+TPV++
Sbjct: 227 EEAFKRSKEYTQGLVERGVVVVAYATDGNSPVLEFDETDIADEEMSQRRKKLWRVTPVFV 286

Query: 275 PEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLL 334
           PEW  WL+EQKKLA VSSDSPVYLSLR+DGRVR SGVGYPPW A VAQLPPVKG+W+GLL
Sbjct: 287 PEWEKWLNEQKKLANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLL 346

Query: 335 DGMDGRV 336
           DGMDGRV
Sbjct: 347 DGMDGRV 347

[Close]

BLAST of Spg037903 vs. TAIR 10
Match: AT1G02910.1 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 136.0 bits (341), Expect = 5.7e-32
Identity = 83/265 (31.32%), Postives = 130/265 (49.06%), Query Frame = 0


Query: 86  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANPSRAEDVPDILKGLGIDF 145
           K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A ++ +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 146 GAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP 205
           G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 206 ESFIMEAFKSSEPFTERLLERGVLVVPF---------------------ATDASSLNFEF 265
           +  +  A + ++ F   LL RGVL+VP                      AT   S+  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 266 DEREE--VKDLTTKRKRLWRLTPVYMPEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG 325
           D R +  V     K +  ++   V   EW  W+ +Q+   GV+    VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

Query: 326 SGVGYPPWNALVAQLPPVKGLWSGL 328
           SG G P W  +  +LPP+  + S L
Sbjct: 427 SGRGMPDWAEISKELPPMDDVLSKL 451

The following BLAST results are available for this feature:

BLAST of Spg037903 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131239.1	9.1e-165	88.39	protein LOW PSII ACCUMULATION 1, chloroplastic [Momordica charantia] >XP_0221312...	[more]
XP_022963501.1	2.7e-164	88.10	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_02296350...	[more]
XP_022967293.1	4.5e-164	87.80	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima] >XP_022967294....	[more]
XP_023554665.1	7.7e-164	87.80	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo] >XP_...	[more]
XP_038888898.1	8.6e-163	89.52	protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899...	[more]

BLAST of Spg037903 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRY4	8.1e-31	31.32	Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Spg037903 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BP58	4.4e-165	88.39	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1HGA1	1.3e-164	88.10	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HWD0	2.2e-164	87.80	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0L902	1.7e-156	86.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1	[more]
A0A5D3BG35	1.1e-155	85.63	Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Spg037903 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28740.1	9.6e-104	63.19	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G02910.1	5.7e-32	31.32	tetratricopeptide repeat (TPR)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021883	Protein LOW PSII ACCUMULATION 1-like	PFAM	PF11998	DUF3493	coord: 82..159 e-value: 4.6E-27 score: 94.0
None	No IPR available	PANTHER	PTHR35498:SF1	LOW PSII ACCUMULATION-LIKE PROTEIN	coord: 33..334
None	No IPR available	PANTHER	PTHR35498	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 33..334

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg037903.1	Spg037903.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane