Spg037872 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg037872
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	PH domain-containing protein
Location	scaffold12: 40184513 .. 40186850 (-)
RNA-Seq Expression	Spg037872
Synteny	Spg037872

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGAGGATCAGGTGGCGTACTTGTTGCAGAGGTACCTTGGAAATTATGTCCGAGGACTCAACAAGGAGGCTCTGAAGATCAGTGTATGGCAAGGTTGGATTTATTTTTGTTCCTGCACTCCTTGTCTCCACTGTTACTGCGTTTTCTTCATTTTCTTCTGCTTTCTCCATTGTTTGAGTTTTAGTCTTGGAAGTTCTGCCAACTTTGTGTACAGATATTGAGTTTTTAATCTTTTAGGGCGTTGGAACTTGGAGCTGGAGCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTAACTTTATGCAATAGGAAATTGTAATTCGTATTGGTTGCTTCGGAGTAGTTGTTAGGTGGCGAAGGAGAGGATGATAGTGAATTTGCAAGGAAGATAGTAGGTGGAACTGAAATATGTTACTGATGAATTAGTGAGAACCATTTATTCAATTTCTCCACTATGGGTATAACTTACAAGGCATTGATCCAGCTCGAGTGAGGATGACTAGAAAGGAGAACTAGCTTGTGGAGGATAGTAGTAGAATTTGGAAGATTAAGCGCCAATATAATGTTAACTATAGAAGTTGGACGAGGAGGCCAAGTCCATGAGTTATGCCTGTCCCTGGTTATGGATTCCGATGAGAGCATAAGAAAATTTTCTTGAGATGGGAACTTTTGTCGGTTGAGGTTTTGTATAACATATCAGAATTTGAATACAATTAGAATAATTAGGAGGACATTGCATTGTCAGGAATGCGTGCGAGCTCTGTTTGTTATCACATATATATTTGAAGTTCTTATGATTTTGAGCTTTTCTAATTTTCTGTTACTGTCTCACAGGTGATGTTGAGCTAACAAATATGCAGCTGAAGCCCGAGGCACTCAATGCGTTGAAGTTGCCAGTGAAAGTTAAGGCTGGATTTCTTGGATCAGTCAAAATTAAGGTTTGTGAAACCTTCATCAGCTCAGTCCATAATCATGTTTGACATTGGGATTTCCCTTCAAAATTGAATAGTTTAAATATACTTATAATTATTTTAACTCCCTGATTGGAAAGTTCATGGACCAAAACTTACATATCAGAAAAAGAAGGAATTAAAGCTAAATAGTAAGTAGTAAATTTGAAACTTTAAAATTTGGAAGGAACCGATATATTTGAACTGAATAGACATTAGAGCCCACAATGATCAGGAAAATGCACTTCAAGCATCGTATCAAGACTATATTCTGATTATTTGTATAAAAAGAGTTGCTCCGTAACTTCTTAACTTTCCATGATTCATCGCTGGTGCAGAGAAATAAAGAAGAATTATTCAGAATAATCTGTTTACAATAGAATTCATAGGCTTTTATAGCCAAATGTGTTTAACTGCCAGTATCTAATCCATCGCTCTATTTGCCAAGAAAATTTATTAATAATTTCTTATGTTGGTCTATTGTCTGTCCACCACTCCACCCAAGAAAATTTCATGGGCTTCACTTCCATGGTTTTGTTGTTTTTGACACAAAAGGTGGGAAACATCCGGATGAGCCATCTTTGATTTGAGTTTTTAATGATATTCCCTGCTGTTGGACTGTTGGTGACCGGGGGAGGGGAGGGGAGGGGGGGGGGGGGGTCCTAGAAGGTAGCATGGCCTCGAGGGTATTGGATTTATTTTTGGTGTCTATAGAAACGGGCAGGATCCTTGTTCTTTGGGATAGTTGTTTAGTGGTGCCTCTTCAAAAGGTCTGTTCTTTGTTTCAATTTTTTTACGTTCTCTTGAAAATGAGGTGAGGTGGGTCTCACGTCCTGTACGATCCTCCTAGACCTAGAGGTAGGAAGGTTTTTTTTGGAAGAGTTAGGCGATCTATATGGCTTATATGACTCTTGTTGGTGCATTATCGAGGATTTTATATGATTTGCTCCCCTATTGAGAAGGACTCGGGTGGTAGGGTAACGAGGTCTATGAGGCAATTTAATGATTTCATTTGAGAGTAGTAACCTTTTTGACCCTCCTTTGGTGAATGGGACGATTACCTGGTCCAATAGCAGGGCACTCAGTAGAATTGATAGGTTTTTGTGTCCAATATGTGGATGGATCTTTTGTGAGTGTGAGACAAGTGTGGGTCCTAGAGTTATGTTGGATCAATGGTTGCTCATTCCAAGTTCAGGGTCTTGAAGTTGGGGTCTTTGTCCCTGAAGATTTGAGAATATGTGGTCAGACCAGCCGTCCTTTAAATCCCCTTTTAGTCGTGGTGAAATGTGGAGGTCCTGAAAATTGGGAAGAGTATCCTTTCATGGGAAAGGGCTCTCAAAGGGGTGTTAAAGATGTGGAATTGAGAGGTTTTTGGGGATCTTAA

mRNA sequence

ATGTTGGAGGATCAGGTGGCGTACTTGTTGCAGAGGTACCTTGGAAATTATGTCCGAGGACTCAACAAGGAGGCTCTGAAGATCAGTGTATGGCAAGGTGATGTTGAGCTAACAAATATGCAGCTGAAGCCCGAGGCACTCAATGCGTTGAAGTTGCCAGTGAAAGTTAAGGCTGGATTTCTTGGATCAGTCAAAATTAAGGGTCTTGAAGTTGGGGTCTTTGTCCCTGAAGATTTGAGAATATGTGGTCAGACCAGCCGTCCTTTAAATCCCCTTTTAGTCGTGGTGAAATGTGGAGGTCCTGAAAATTGGGAAGAGTATCCTTTCATGGGAAAGGGCTCTCAAAGGGGTGTTAAAGATGTGGAATTGAGAGGTTTTTGGGGATCTTAA

Coding sequence (CDS)

ATGTTGGAGGATCAGGTGGCGTACTTGTTGCAGAGGTACCTTGGAAATTATGTCCGAGGACTCAACAAGGAGGCTCTGAAGATCAGTGTATGGCAAGGTGATGTTGAGCTAACAAATATGCAGCTGAAGCCCGAGGCACTCAATGCGTTGAAGTTGCCAGTGAAAGTTAAGGCTGGATTTCTTGGATCAGTCAAAATTAAGGGTCTTGAAGTTGGGGTCTTTGTCCCTGAAGATTTGAGAATATGTGGTCAGACCAGCCGTCCTTTAAATCCCCTTTTAGTCGTGGTGAAATGTGGAGGTCCTGAAAATTGGGAAGAGTATCCTTTCATGGGAAAGGGCTCTCAAAGGGGTGTTAAAGATGTGGAATTGAGAGGTTTTTGGGGATCTTAA

Protein sequence

MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGFLGSVKIKGLEVGVFVPEDLRICGQTSRPLNPLLVVVKCGGPENWEEYPFMGKGSQRGVKDVELRGFWGS

Homology

[Close]

BLAST of Spg037872 vs. NCBI nr
Match: XP_038888106.1 (uncharacterized protein LOC120078006 isoform X2 [Benincasa hispida])

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF
Sbjct: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60

Query: 61 LGSVKIK 68
          LGSVKIK
Sbjct: 61 LGSVKIK 67

[Close]

BLAST of Spg037872 vs. NCBI nr
Match: KAG6571775.1 (putative vacuolar protein sorting-associated protein 13A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF
Sbjct: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60

Query: 61 LGSVKIK 68
          LGSVKIK
Sbjct: 61 LGSVKIK 67

[Close]

BLAST of Spg037872 vs. NCBI nr
Match: XP_008465914.1 (PREDICTED: uncharacterized protein LOC103503494 isoform X1 [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF
Sbjct: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60

Query: 61 LGSVKIK 68
          LGSVKIK
Sbjct: 61 LGSVKIK 67

[Close]

BLAST of Spg037872 vs. NCBI nr
Match: XP_023553987.1 (uncharacterized protein LOC111811402 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF
Sbjct: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60

Query: 61 LGSVKIK 68
          LGSVKIK
Sbjct: 61 LGSVKIK 67

[Close]

BLAST of Spg037872 vs. NCBI nr
Match: XP_022973254.1 (uncharacterized protein LOC111471811 [Cucurbita maxima])

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF
Sbjct: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60

Query: 61 LGSVKIK 68
          LGSVKIK
Sbjct: 61 LGSVKIK 67

[Close]

BLAST of Spg037872 vs. ExPASy Swiss-Prot
Match: Q709C8 (Vacuolar protein sorting-associated protein 13C OS=Homo sapiens OX=9606 GN=VPS13C PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-11
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          +LE  VA LL R+LG+YV  LNK  LK+ +W G+V L N+Q+K  AL+ L +P KVKAG 
Sbjct: 2  VLESVVADLLNRFLGDYVENLNKSQLKLGIWGGNVALDNLQIKENALSELDVPFKVKAGQ 61

Query: 61 LGSVKIK 68
          +  + +K
Sbjct: 62 IDKLTLK 68

[Close]

BLAST of Spg037872 vs. ExPASy Swiss-Prot
Match: Q8BX70 (Vacuolar protein sorting-associated protein 13C OS=Mus musculus OX=10090 GN=Vps13c PE=1 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-11
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          +LE  VA LL R+LG+YV  LNK  LK+ +W G+V L N+Q+K  AL+ L +P KVKAG 
Sbjct: 2  VLESVVADLLNRFLGDYVENLNKSQLKLGIWGGNVALDNLQIKENALSELDVPFKVKAGQ 61

Query: 61 LGSVKIK 68
          +  + +K
Sbjct: 62 IDKLTLK 68

[Close]

BLAST of Spg037872 vs. ExPASy Swiss-Prot
Match: Q5THJ4 (Vacuolar protein sorting-associated protein 13D OS=Homo sapiens OX=9606 GN=VPS13D PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 6.1e-11
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          MLE  VA++L  YLG YV  LN + L +++ +G VEL N+ LK +AL  L+LP +VKAGF
Sbjct: 1  MLEGLVAWVLNTYLGKYVNNLNTDQLSVALLKGAVELENLPLKKDALKELELPFEVKAGF 60

Query: 61 LGSVKIK 68
          +G V ++
Sbjct: 61 IGKVTLQ 67

[Close]

BLAST of Spg037872 vs. ExPASy Swiss-Prot
Match: Q54KX3 (Putative vacuolar protein sorting-associated protein 13F OS=Dictyostelium discoideum OX=44689 GN=vps13F PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-10
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          M E  V+ LL RYL  Y++ LN + L IS+W G+V L N++LK  AL    LP  +K GF
Sbjct: 1  MFESIVSNLLTRYLKEYIKALNTDNLNISIWSGNVSLENLELKSRALEKFNLPFTIKEGF 60

Query: 61 LGSVKIK 68
          LG + +K
Sbjct: 61 LGKLSLK 67

[Close]

BLAST of Spg037872 vs. ExPASy Swiss-Prot
Match: Q07878 (Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS13 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.9e-10
Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          MLE   A LL R LG+YV   +   L + +W GDV+L N++L+ + L++L LP+ VK+G 
Sbjct: 1  MLESLAANLLNRLLGSYVENFDPNQLNVGIWSGDVKLKNLKLRKDCLDSLNLPIDVKSGI 60

Query: 61 LGSV-------KIKGLEVGVFVPEDLRICGQTS 87
          LG +        +K   V + + +   +C   S
Sbjct: 61 LGDLVLTVPWSSLKNKPVKIIIEDCYLLCSPRS 93

[Close]

BLAST of Spg037872 vs. ExPASy TrEMBL
Match: A0A6J1IE12 (uncharacterized protein LOC111471811 OS=Cucurbita maxima OX=3661 GN=LOC111471811 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.7e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF
Sbjct: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60

Query: 61 LGSVKIK 68
          LGSVKIK
Sbjct: 61 LGSVKIK 67

[Close]

BLAST of Spg037872 vs. ExPASy TrEMBL
Match: A0A5D3E5L1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003970 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.7e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF
Sbjct: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60

Query: 61 LGSVKIK 68
          LGSVKIK
Sbjct: 61 LGSVKIK 67

[Close]

BLAST of Spg037872 vs. ExPASy TrEMBL
Match: A0A0A0LF94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G911780 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.7e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF
Sbjct: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60

Query: 61 LGSVKIK 68
          LGSVKIK
Sbjct: 61 LGSVKIK 67

[Close]

BLAST of Spg037872 vs. ExPASy TrEMBL
Match: A0A6J1EUN4 (uncharacterized protein LOC111438054 OS=Cucurbita moschata OX=3662 GN=LOC111438054 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.7e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF
Sbjct: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60

Query: 61 LGSVKIK 68
          LGSVKIK
Sbjct: 61 LGSVKIK 67

[Close]

BLAST of Spg037872 vs. ExPASy TrEMBL
Match: A0A1S3CPY5 (uncharacterized protein LOC103503494 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503494 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.7e-28
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF
Sbjct: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60

Query: 61 LGSVKIK 68
          LGSVKIK
Sbjct: 61 LGSVKIK 67

[Close]

BLAST of Spg037872 vs. TAIR 10
Match: AT4G17140.1 (pleckstrin homology (PH) domain-containing protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-30
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVEL NMQLKPEALNALKLPV+VKAGF
Sbjct: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELKNMQLKPEALNALKLPVRVKAGF 60

Query: 61 LGSVKIK 68
          LGSVK+K
Sbjct: 61 LGSVKLK 67

[Close]

BLAST of Spg037872 vs. TAIR 10
Match: AT4G17140.2 (pleckstrin homology (PH) domain-containing protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-30
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVEL NMQLKPEALNALKLPV+VKAGF
Sbjct: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELKNMQLKPEALNALKLPVRVKAGF 60

Query: 61 LGSVKIK 68
          LGSVK+K
Sbjct: 61 LGSVKLK 67

[Close]

BLAST of Spg037872 vs. TAIR 10
Match: AT4G17140.3 (pleckstrin homology (PH) domain-containing protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-30
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGF 60
          MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVEL NMQLKPEALNALKLPV+VKAGF
Sbjct: 1  MLEDQVAYLLQRYLGNYVRGLNKEALKISVWQGDVELKNMQLKPEALNALKLPVRVKAGF 60

Query: 61 LGSVKIK 68
          LGSVK+K
Sbjct: 61 LGSVKLK 67

[Close]

BLAST of Spg037872 vs. TAIR 10
Match: AT1G48090.1 (calcium-dependent lipid-binding family protein )

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-17
Identity = 39/63 (61.90%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 5  QVAYLLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGFLGSV 64
          +V +LL+RYLG YV GL+ EAL+ISVW+GDV L +++LK EALN+LKLPV VK+GF+G++
Sbjct: 24 EVLHLLRRYLGEYVHGLSTEALRISVWKGDVVLKDLKLKAEALNSLKLPVAVKSGFVGTI 83

Query: 65 KIK 68
           +K
Sbjct: 84 TLK 86

[Close]

BLAST of Spg037872 vs. TAIR 10
Match: AT5G24740.1 (Protein of unknown function (DUF1162) )

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-10
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 9  LLQRYLGNYVRGLNKEALKISVWQGDVELTNMQLKPEALNALKLPVKVKAGFLGSVKIK 68
          LL  YLG Y++ + K+ LKIS+W G+V L N++L PEA   L+LP+ +K G +G + IK
Sbjct: 12 LLLGYLGRYIKDIQKDQLKISLWNGEVLLENVELNPEAFEYLQLPIALKQGRVGKLSIK 70

The following BLAST results are available for this feature:

BLAST of Spg037872 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888106.1	1.2e-27	100.00	uncharacterized protein LOC120078006 isoform X2 [Benincasa hispida]	[more]
KAG6571775.1	1.2e-27	100.00	putative vacuolar protein sorting-associated protein 13A, partial [Cucurbita arg...	[more]
XP_008465914.1	1.2e-27	100.00	PREDICTED: uncharacterized protein LOC103503494 isoform X1 [Cucumis melo]	[more]
XP_023553987.1	1.2e-27	100.00	uncharacterized protein LOC111811402 [Cucurbita pepo subsp. pepo]	[more]
XP_022973254.1	1.2e-27	100.00	uncharacterized protein LOC111471811 [Cucurbita maxima]	[more]

BLAST of Spg037872 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q709C8	4.7e-11	49.25	Vacuolar protein sorting-associated protein 13C OS=Homo sapiens OX=9606 GN=VPS13...	[more]
Q8BX70	4.7e-11	49.25	Vacuolar protein sorting-associated protein 13C OS=Mus musculus OX=10090 GN=Vps1...	[more]
Q5THJ4	6.1e-11	49.25	Vacuolar protein sorting-associated protein 13D OS=Homo sapiens OX=9606 GN=VPS13...	[more]
Q54KX3	1.4e-10	46.27	Putative vacuolar protein sorting-associated protein 13F OS=Dictyostelium discoi...	[more]
Q07878	3.9e-10	34.41	Vacuolar protein sorting-associated protein 13 OS=Saccharomyces cerevisiae (stra...	[more]

BLAST of Spg037872 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IE12	5.7e-28	100.00	uncharacterized protein LOC111471811 OS=Cucurbita maxima OX=3661 GN=LOC111471811...	[more]
A0A5D3E5L1	5.7e-28	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LF94	5.7e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G911780 PE=4 SV=1	[more]
A0A6J1EUN4	5.7e-28	100.00	uncharacterized protein LOC111438054 OS=Cucurbita moschata OX=3662 GN=LOC1114380...	[more]
A0A1S3CPY5	5.7e-28	100.00	uncharacterized protein LOC103503494 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Spg037872 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17140.1	2.1e-30	95.52	pleckstrin homology (PH) domain-containing protein	[more]
AT4G17140.2	2.1e-30	95.52	pleckstrin homology (PH) domain-containing protein	[more]
AT4G17140.3	2.1e-30	95.52	pleckstrin homology (PH) domain-containing protein	[more]
AT1G48090.1	4.5e-17	61.90	calcium-dependent lipid-binding family protein	[more]
AT5G24740.1	2.4e-10	47.46	Protein of unknown function (DUF1162)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026854	Vacuolar protein sorting-associated protein 13-like, N-terminal domain	PFAM	PF12624	Chorein_N	coord: 2..67 e-value: 3.9E-21 score: 75.3
None	No IPR available	PANTHER	PTHR16166:SF93	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13D	coord: 3..67
IPR026847	Vacuolar protein sorting-associated protein 13	PANTHER	PTHR16166	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13	coord: 3..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg037872.1	Spg037872.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane