Spg037859 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg037859
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	cleavage and polyadenylation specificity factor subunit 1
Location	scaffold12: 38847848 .. 38853636 (+)
RNA-Seq Expression	Spg037859
Synteny	Spg037859

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAGAAGCAAGGCAGTCTCAATGCTCAATTAAAATAGGAAAGAATGAAAATAAAGGCAGAGTTGCTAGACATGACGTCGAAAGAGAGAGTTTACTTGGACAAAAATGTAAATTGAGATGGCTTGAGGAGGGAGACGAGAACACTGCCTTCTTTCACTACTGGGCCTCAGCTGCGAAAAACAGAGCATTCATAGCTTTACTAGAAAAGGAAGACGACAACTTCCTGTCCTTTGAGAAAGAGATTGATGAAGATATTATCAGTTTCTATAAAAACTTATATTTAGATGATAATCAAGATCGGTTCACCCTTGATGGCATTTCTTGGGCTTCTATTGAGGACTCTAGTAGGGTGTGAATTGAAAGAAGATCTACCGAGGATGAAATCCACATAGCAGTTTAGAGTATGGGCAATTGTAAATCTTGTGGGTCGAATTGTATGATGGAAGAGTTTTATAAAAAATTTTGGAACATTTTGAAACCTGGTTTAGTGGAGGTGTTCCAATAATTTTTTAAAAACGGCATTGTCAACAAACGCACTGACGAGATGTACATTTGCTTCATCCCCAAGCAGAAAAATGCCTCAAAAGTTAGAGACTTTAGACCTATAAGTTTGCTAACTTCACTCTACAAGGTGATAGCTAAGGTACTGGCTGAAAGGCGGAAGGAGATCCTTCCCTCGACTGTTAGTAATTGCCAAGCAACCTTTGTCCAAGGAAGACAAATTCTTGATGCAATTTTAGTTGCCTCTGAATTGGTGGAGGAATGGAAAATGTTGAAAAAGAAAGGTTTTATCCTCAAGCTTGATCTGGAAAAGCCACATGATAAAGTCAATTGGTTTTTTCTTGATGAAATCTTGAAACTAAAAGAGTTCGGAAATCATTAGAGATGCTAGATTCGAGGTTGTCTTCATAATATCAATTTCTCCATTCTGATTAATGGAAAGTCGAGAGGGAAAATAGTGGCTTCTAGAGACATTAGACAAGGAGACCCACTCTCTCCATTCCTTAACTATTTTGGGAGAGGCTCTTAATCGAACTATTCAGTATTGTCTTGAAAAGAGGATTTTAAAAGGCTTTTGGGTGGGAAGCAACATGGAATAGATTGCTCTGCTACAATTTTCCGATGATACAATTATTTTTTGCCTAATGAAGGGGACATTCTCTAGAATTGGTGGAAAATTTTAAGCATTTTATGAAAGGCTTGGATTTGTCCTTAAATATAGCAAAAACCTCACTAATAGGCATAAATGTGGAGGATCATGAGGTGCTCATTTAGGCTAGTAGATTTAATTGTTAAAGGGAGGTCCTCCAAATTAACTATCTTGGTTTCATGTTGGGTGGGAACCATCATAGGCGGTATCTTTGGAATTCGATCATATTGATAATTTGAAGACCAAGCTAGATGGGTGAAGTATTTCGGGGAAGAATAACATTAGCTGAATTGGTCCCTAATAACATACCTCTGTACCAATTCTCTTTTAAAAGTGCCTAAATCTGTTATTAAAGCCACAAAGAAGCTGATTAGGGACTTCTTATGGAGTGGGGGAGTGTATAAACTGGGAAGAAACCTAGTTAAATGGGATTGGGCAAGTCTTCCTCTGGCTTCGGGAGGGCTAGGAGTGGGGTCGTTGGCTTTTCGAAATGATGCCCTCTTAACTAAATGACTATGGAGATTTACTCAGGAAAAAGACTCTTTATGGAGGAAGGTGGTTATCAATATTTATGGTGTCAACTCCTATGGCGGGAAAACGAAGAAACTTAAAAGAGACTAAAGGTAGCTGACCATGGAAGGACATTGCCTAGAACCATCCTTTCTTTGACAGATTCTCTAAGTTTCGAGCTAGTTGCTGCAAGGAGATTCAGTTTTGAGAAGATGTGTGGCTGGATCAGGTGCCTCTGAGAATATCCTATAAGAAAGAGTCCTCCATCCATGATTGTTGTGATGATGAAAACCAGTCATGGAACTTAGGCCTGCGCAGAGGTGTTTTTGACCATGAACTCGCAAATTGGGTTGCCCTAGTGGAAAAGTTGAGTGCTTTTAATGTGGGAAGTGAGAAAGATAGCCTAGTTTGGACAGCAGGTGGTTCAAGGACGTTGTCCACCGAATCTACTTTCCAAAAGCTAGCTATGCAAAATCCCAAAACTCATACCCTTTAATCAAGTTGATCAATAGTCCCAAGAAATCAAAGGCCTTCCTATGGTCTTTGGCTTTTAGAAGCGTGGATATAGATGATAAGGTGCAGAGGAAATTAAAAAACTGGACCCTCTCTCCTTCGGCAAGCTTTGCCTAAAAGGGGTCGAATCTCTGGATCACCTTTTTTTGCCTTGTGATTTTGCTTATAAGGGATGAAATTTCTTTGCAAACTTGATGGGGTTGTCTTGGTGTATGCCAAATCGCATTGAGGATTGGATGGTGGAGTGTTTTAGTGGATGGAATCTTCTGGGAAAAAGTGAGGTTCATCGGCTCTTGTGCTTTTAGGTCTCTCTTGTGGTTGTTTTGGAAAGAAAGAATTGCTATAACTTTTGAAGATAAGTCTTTAAGCTTTGATTCCTTTTGTAATTTTGTACAAAATACGGTCTCTTGGTGGATAAGCCTTCATTTTTTTTGTAATTATAGTCTGCATGTGATTATTAACAACTAGCAGACTCTTATGAGTAGTTTTTTTCCGTCGGGGCTTTCCCATCCCTCAGCCCTTAGGCTGTTATCTTTTTTTTTTTTTTTTGGAATGCAGCTAGATTCTTGTTTCTTATTTAAAAAAAAGGCTAGTAGGTTTTCTCTTGCAATATTGACTGTGGTTGGAATCTTGGAACATCACTGGTGGTCTCTGTTGGCATCACCCACCCAAGGATGATCATAACCATTTGGAGAGTTGACTCACGTTTCAAGTTCACCATTGAGAAAAGCATGTCAAGTTAAGTTGGTGAAAGATCAAATTCAAGTTACTAACAGAATATAAGAATGATAGTTAATAAGAGCAATGGTCTTCTAATAATAAATCCCATGGGTTTGGCTAAAGCCTCTAGTTACTAAGTGGCTTTGTATGAATACTGTCATTATAGTAAACACCCATTTACATCCCATCATTTTCTTCTCTTTTAGATTGTTATTTTCAAAATATCATTGTTATAGAGCATTGATCTCCATAATTGCTAGCTTCCAATTTAGATTTCCCATGGCTTCGTCAATGTACTTGGAAGTACGTTGTGCCAGTGAAAGTTAGTAGAAGTAAGTTGCATAACTAAAAGATGGTGGCTAGGGTTTTGGTGGCAGCTAGGGTTCTGATGGTAGCTAGAGGTTTTTGTGTTCAAATTCCAACTACCGAGTTAAAGATGAACAAAAGAAAATGATATTTCTTATATGTCCAAAGTGTTCCTCTTAGGATAATTGTAATGGGTGGCAAAATTAGGGTAAATAATGACAAATTTAGCAATTTTTTAAAATAATTGCAAATATGGCAAACTTTTTAAATGAATTTTTTATATTCCCAAATTGCCCCTGGCGTTCATCTTCTTCATCCTCGTCTGTCTGTTTTATATATATATATATATATATATATATTGATAGATTCTATCAGTGGTAGAAAAACTTTCTATCACTGATAGATTTTATCAGTGGTCGAAAAACTTTCTATCAGTGATAGAAAAACTTTCTATCACTGATAGATTCTATCAGTGATAGATTTTAAAATCTATCAGTGATAGAAAGTTTTTCTACCACTGATAGAATCTATCAGTGATAGAAAGTTTTTCTACCACTGATAGAATCTATCAGTGGTAGAAAAACTTTCTATCAGTGGTAGAAAAACTTTCTATCAGTGATAGAAAAAATTTCTATCACTGATAGATTCTATCAGTGGTAGAAAAACTTTCTATCAGTGATAGAAATTTTCTATCACTATTGAAACTTTTCTACCAGAAACCAAACAACACGATTGAAAACCTTGTTCAAGTATTTTGTTTTTTCTCAGTTCATAATGCTCATCTTTCTATCACATGTTACTGATAGAAGATTGAAAACTAAACGACACGATTGAAAACCTTGTTTAAGTAAATTTCTTTATTTGGTTTATAATGCTCATCTTTCTATCACTGATAGAATTTCTATAATTTCTTTCTATTACTGATAGAATCTATCAGTGATAGAAAGTTTCTATAAGTGTTGGTGTTTTGATATCATATTGTTTTGTTAGTTGTTAGGTTATTGTTGTCATTCTATATGTTTTTGTAGTTGTTGTGTTCTATTATGACTTTTCTATCACTGATAGAAGCTAGTTGTCTCGTTATTGTATGTTGGATTTTTCTATCAGTGGTAGAAAACTTTCTATCACTTATAGAAAGTTTTTCTATCAGTGATAGAAACTTTCTATCGCTGATAGAACATTCTATCAGTGATAGAAACTTTTCTATCATTGATAGAAGATTTCTATCACTGATAGAAGATTTCTATCACTGATAGAAGATTTCTATCACTGATAGAAGTGATAGAAAATCTTTCTATCATTGATAGAAATCTTCTATCAGTGGTAGAAATTTTTTCTATCATGGATAGAAAAATACCTATCATTGATAGAAATCTTTTCTATCACTGATAGAATCTATCGGTGATAGAAAAACTTTCTATCACTGATAGAAAATCTTTTCTATCACTGATAGAAAAACTTTCTATCACTAAATCTGGAGGGGTATTTTAGTAAATGCAACATGAGACCATCAGATTTTGTCATTTTTGCAATTTTTTTTGTGGGTTGCTAGATTTGCAATTATTTTGGCCCATATTGCTATCATTGCAACTAGCCCTTCCTCTTATATAGTAGGATAACTGTTATAGATAAGAAAAAGAGTACATAATTAAAATAACATAACCATTATCATAAATATGAGCAATTTAAAAAGTTAAATTCGACATTAATGGAGATTGATAGTTCTCTGGCAAGTTTGTTTCTTTGCAATTTCATGGAGTATCTAGCTTTAGAGAAACCTCATAATTTTTATGGGGTGGAGAGGTCTTGGGAAGTCACTTGAGCTATCATTAGATTTAACATCTTATGGGCGTTTGTTTCTAAAGCTTTTTGGAGTTATTAGGCAGAGTTTTTTGGATTGAAGCCCCTTTTTGTAGGCTTAGGCTCCGGCTCCTTTTGTGAGGCTGTTTTTTTTTGTATGTCCTTGCATGTTCTTTCATTTTTCTCAATGAAATCTTGGTTTGAGCATTAATGAAGACTCACCCTTTGCTTTTTGAGGTAGGTTTTTGATAGGCCTCCAATTATGAGAGTGTGTCAATGTAGAGTGTTGGGAGGTCTACTTGAAGCGTAGTAGTCTGGGGTTCAAGAATCTTACTTAGTTAAAGAGGTTGACATGTGAATTCTTTCGAGATATACAGGGAAGATAGATTTGGGTGAGAGATACAGTCTTGTCTAGCTTGTACTCAGGTGAGTCAGGGGAGAGGAAGGGAGCTATGGAATCTCCCTTAGTAAGTAACTTTACCTTAAATCAATGTATTGGTTTCTATGACTTTCTATATCTATCTTTTAGTTTTATAAAAAAAAAATTGACTTTGTTGCAATTTTCTTTTTAGAACACAACCACAAAGGAGAATGAAACACTTCTAGCAGTTGGAACAGCATATGTGCAAGGAGAGGATGTTGCTGCAAGAGGAAGAGTGCTTTTATTTTCTGTTGGAAAAGATGTCGATAATTCGCAAACCTTGGTATATTTATGTGTAGATTTATTTCATTCCAATATAAGTTTTTCTTTTATTTAGATTAGATATTGTTTTATTATTATATCTT

mRNA sequence

ATGGTGGAGAAGCAAGGCACTGCGAAAAACAGAGCATTCATAGCTTTACTAGAAAAGGAAGACGACAACTTCCTGTCCTTTGAGAAAGAGATTGATGAAGATATTATCAGTTTCTATAAAAACTTATATTTAGATGATAATCAAGATCGGTTCACCCTTGATGGCATTTCTTGGGCTTCTATTGAGGACTCTAGTAGGGTGCCTCTGAGAATATCCTATAAGAAAGAGTCCTCCATCCATGATTGTTGTGATGATGAAAACCAGTCATGGAACTTAGGCCTGCGCAGAGGTGTTTTTGACCATGAACTCGCAAATTGGGTTGCCCTAGTGGAAAAGTTGAGTGCTTTTAATGTGGGAAGTGAGAAAGATAGCCTAGTTTGGACAGCAGGTGAGTCAGGGGAGAGGAAGGGAGCTATGGAATCTCCCTTAAACACAACCACAAAGGAGAATGAAACACTTCTAGCAGTTGGAACAGCATATGTGCAAGGAGAGGATGTTGCTGCAAGAGGAAGAGTGCTTTTATTTTCTGTTGGAAAAGATGTCGATAATTCGCAAACCTTGGTATATTTATGTGTAGATTTATTTCATTCCAATATAAGTTTTTCTTTTATTTAG

Coding sequence (CDS)

ATGGTGGAGAAGCAAGGCACTGCGAAAAACAGAGCATTCATAGCTTTACTAGAAAAGGAAGACGACAACTTCCTGTCCTTTGAGAAAGAGATTGATGAAGATATTATCAGTTTCTATAAAAACTTATATTTAGATGATAATCAAGATCGGTTCACCCTTGATGGCATTTCTTGGGCTTCTATTGAGGACTCTAGTAGGGTGCCTCTGAGAATATCCTATAAGAAAGAGTCCTCCATCCATGATTGTTGTGATGATGAAAACCAGTCATGGAACTTAGGCCTGCGCAGAGGTGTTTTTGACCATGAACTCGCAAATTGGGTTGCCCTAGTGGAAAAGTTGAGTGCTTTTAATGTGGGAAGTGAGAAAGATAGCCTAGTTTGGACAGCAGGTGAGTCAGGGGAGAGGAAGGGAGCTATGGAATCTCCCTTAAACACAACCACAAAGGAGAATGAAACACTTCTAGCAGTTGGAACAGCATATGTGCAAGGAGAGGATGTTGCTGCAAGAGGAAGAGTGCTTTTATTTTCTGTTGGAAAAGATGTCGATAATTCGCAAACCTTGGTATATTTATGTGTAGATTTATTTCATTCCAATATAAGTTTTTCTTTTATTTAG

Protein sequence

MVEKQGTAKNRAFIALLEKEDDNFLSFEKEIDEDIISFYKNLYLDDNQDRFTLDGISWASIEDSSRVPLRISYKKESSIHDCCDDENQSWNLGLRRGVFDHELANWVALVEKLSAFNVGSEKDSLVWTAGESGERKGAMESPLNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLVYLCVDLFHSNISFSFI

Homology

[Close]

BLAST of Spg037859 vs. NCBI nr
Match: XP_022157087.1 (cleavage and polyadenylation specificity factor subunit 1 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 2.4e-14
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 143  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV 189
            LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD+DNSQTLV
Sbjct: 1032 LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDIDNSQTLV 1077

[Close]

BLAST of Spg037859 vs. NCBI nr
Match: XP_022973595.1 (cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 89.0 bits (219), Expect = 5.2e-14
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 143 LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV 189
           LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Sbjct: 864 LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLV 909

[Close]

BLAST of Spg037859 vs. NCBI nr
Match: KAG6571759.1 (Cleavage and polyadenylation specificity factor subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 5.2e-14
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 143  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV 189
            LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Sbjct: 1120 LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLV 1165

[Close]

BLAST of Spg037859 vs. NCBI nr
Match: XP_038887723.1 (cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 89.0 bits (219), Expect = 5.2e-14
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 143 LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV 189
           LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Sbjct: 866 LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLV 911

[Close]

BLAST of Spg037859 vs. NCBI nr
Match: XP_023520840.1 (cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.0 bits (219), Expect = 5.2e-14
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 143 LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV 189
           LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Sbjct: 862 LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLV 907

[Close]

BLAST of Spg037859 vs. ExPASy Swiss-Prot
Match: Q9FGR0 (Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CPSF160 PE=1 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-12
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 143  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV 189
            LN +T ENETLLAVGTAYVQGEDVAARGRVLLFS GK+ DNSQ +V
Sbjct: 1120 LNASTGENETLLAVGTAYVQGEDVAARGRVLLFSFGKNGDNSQNVV 1165

[Close]

BLAST of Spg037859 vs. ExPASy Swiss-Prot
Match: Q7XWP1 (Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0252200 PE=3 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 7.4e-11
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 144  NTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV 189
            NTTTKENETLLA+GTAYV GEDVAARGRVLLFS  K  +NSQ LV
Sbjct: 1119 NTTTKENETLLAIGTAYVLGEDVAARGRVLLFSFTKS-ENSQNLV 1162

[Close]

BLAST of Spg037859 vs. ExPASy TrEMBL
Match: A0A6J1DTM4 (cleavage and polyadenylation specificity factor subunit 1 OS=Momordica charantia OX=3673 GN=LOC111023895 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 143  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV 189
            LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD+DNSQTLV
Sbjct: 1032 LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDIDNSQTLV 1077

[Close]

BLAST of Spg037859 vs. ExPASy TrEMBL
Match: A0A6J1I7X9 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472174 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-14
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 143  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV 189
            LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Sbjct: 1122 LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLV 1167

[Close]

BLAST of Spg037859 vs. ExPASy TrEMBL
Match: A0A6J1IBS0 (cleavage and polyadenylation specificity factor subunit 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472174 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-14
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 143 LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV 189
           LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Sbjct: 864 LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLV 909

[Close]

BLAST of Spg037859 vs. ExPASy TrEMBL
Match: A0A0A0LKI9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074280 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-14
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 143  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV 189
            LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Sbjct: 1122 LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLV 1167

[Close]

BLAST of Spg037859 vs. ExPASy TrEMBL
Match: A0A5A7U3R4 (Cleavage and polyadenylation specificity factor subunit 1 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00500 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.6e-14
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0


Query: 143 LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV 189
           LN TTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKD DNSQTLV
Sbjct: 571 LNATTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDADNSQTLV 616

[Close]

BLAST of Spg037859 vs. TAIR 10
Match: AT5G51660.1 (cleavage and polyadenylation specificity factor 160 )

HSP 1 Score: 74.7 bits (182), Expect = 9.5e-14
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 143  LNTTTKENETLLAVGTAYVQGEDVAARGRVLLFSVGKDVDNSQTLV 189
            LN +T ENETLLAVGTAYVQGEDVAARGRVLLFS GK+ DNSQ +V
Sbjct: 1120 LNASTGENETLLAVGTAYVQGEDVAARGRVLLFSFGKNGDNSQNVV 1165

The following BLAST results are available for this feature:

BLAST of Spg037859 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157087.1	2.4e-14	97.83	cleavage and polyadenylation specificity factor subunit 1 [Momordica charantia]	[more]
XP_022973595.1	5.2e-14	97.83	cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucurbita ...	[more]
KAG6571759.1	5.2e-14	97.83	Cleavage and polyadenylation specificity factor subunit 1, partial [Cucurbita ar...	[more]
XP_038887723.1	5.2e-14	97.83	cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Benincasa ...	[more]
XP_023520840.1	5.2e-14	97.83	cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucurbita ...	[more]

BLAST of Spg037859 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGR0	1.3e-12	82.61	Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thalian...	[more]
Q7XWP1	7.4e-11	82.22	Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sati...	[more]

BLAST of Spg037859 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DTM4	1.1e-14	97.83	cleavage and polyadenylation specificity factor subunit 1 OS=Momordica charantia...	[more]
A0A6J1I7X9	2.5e-14	97.83	cleavage and polyadenylation specificity factor subunit 1 isoform X1 OS=Cucurbit...	[more]
A0A6J1IBS0	2.5e-14	97.83	cleavage and polyadenylation specificity factor subunit 1 isoform X2 OS=Cucurbit...	[more]
A0A0A0LKI9	2.5e-14	97.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074280 PE=4 SV=1	[more]
A0A5A7U3R4	9.6e-14	95.65	Cleavage and polyadenylation specificity factor subunit 1 isoform X3 OS=Cucumis ...	[more]

BLAST of Spg037859 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51660.1	9.5e-14	82.61	cleavage and polyadenylation specificity factor 160	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004871	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	PFAM	PF03178	CPSF_A	coord: 144..187 e-value: 4.5E-7 score: 29.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg037859.1	Spg037859.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003676	nucleic acid binding