Spg037771 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg037771
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Photosystem II protein D1
Location	scaffold27: 99565 .. 100030 (-)
RNA-Seq Expression	Spg037771
Synteny	Spg037771

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCCTTGGATTGCTGTTGCATATTCAGTTCCTGTTGCAGCTGCTACTGCTCGACGATTCTCCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTGATAATATCGTAGCAGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGTAGCACTATGGCTTTCAGGTTGA

mRNA sequence

ATGCGTCCTTGGATTGCTGTTGCATATTCAGTTCCTGTTGCAGCTGCTACTGCTCGACGATTCTCCCAATTGGTCAAGGAAGCTTTTCTGACGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTGATAATATCGTAGCAGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGTAGCACTATGGCTTTCAGGTTGA

Coding sequence (CDS)

ATGCGTCCTTGGATTGCTGTTGCATATTCAGTTCCTGTTGCAGCTGCTACTGCTCGACGATTCTCCCAATTGGTCAAGGAAGCTTTTCTGACGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTGATAATATCGTAGCAGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGTAGCACTATGGCTTTCAGGTTGA

Protein sequence

MRPWIAVAYSVPVAAATARRFSQLVKEAFLTAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTVALWLSG

Homology

[Close]

BLAST of Spg037771 vs. NCBI nr
Match: OTF84607.1 (putative photosynthetic reaction centre, L/M [Helianthus annuus])

HSP 1 Score: 226.1 bits (575), Expect = 1.8e-55
Identity = 117/131 (89.31%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKE-AFLTAEHNILMHPFHMLGVAGVFGGSLFSAMH 60
           MRPWIAVAYS PVAAATA      + + +FL AEHNILMHPFHMLGVAGVFGGSLFSAMH
Sbjct: 111 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFLMAEHNILMHPFHMLGVAGVFGGSLFSAMH 170

Query: 61  GSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFL 120
           GSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYFGRLIFQYASFNNSRSLHFFL
Sbjct: 171 GSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFL 230

Query: 121 AAWPVVGIWFT 131
           AAWPVVGIWFT
Sbjct: 231 AAWPVVGIWFT 241

[Close]

BLAST of Spg037771 vs. NCBI nr
Match: QMV49325.1 (maturase K [Prunus armeniaca])

HSP 1 Score: 216.5 bits (550), Expect = 1.5e-52
Identity = 116/148 (78.38%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKEA------------------FLTAEHNILMHPFH 60
           MRPWIAVAYS PVAAATA      + +                    L AEHNILMHPFH
Sbjct: 145 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVLQAEHNILMHPFH 204

Query: 61  MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRL 120
           MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYFGRL
Sbjct: 205 MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRL 264

Query: 121 IFQYASFNNSRSLHFFLAAWPVVGIWFT 131
           IFQYASFNNSRSLHFFLAAWPVVGIWFT
Sbjct: 265 IFQYASFNNSRSLHFFLAAWPVVGIWFT 292

[Close]

BLAST of Spg037771 vs. NCBI nr
Match: KAD3068813.1 (hypothetical protein E3N88_36693 [Mikania micrantha])

HSP 1 Score: 216.1 bits (549), Expect = 1.9e-52
Identity = 115/148 (77.70%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKEA------------------FLTAEHNILMHPFH 60
           MRPWIAVAYS PVAAATA     L+ +                      AEHNILMHPFH
Sbjct: 13  MRPWIAVAYSTPVAAATAVFLIYLIGQGRFSDGMPLGISGTFNFMIVFQAEHNILMHPFH 72

Query: 61  MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRL 120
           MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE+ NIVAAHGYFGRL
Sbjct: 73  MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEESYNIVAAHGYFGRL 132

Query: 121 IFQYASFNNSRSLHFFLAAWPVVGIWFT 131
           IFQYASFNNSRSLHFFLAAWPVVGIWFT
Sbjct: 133 IFQYASFNNSRSLHFFLAAWPVVGIWFT 160

[Close]

BLAST of Spg037771 vs. NCBI nr
Match: YP_009869173.1 (photosystem II protein D1 [Allium macranthum] >QKJ80677.1 photosystem II protein D1 [Allium macranthum])

HSP 1 Score: 216.1 bits (549), Expect = 1.9e-52
Identity = 115/146 (78.77%), Postives = 118/146 (80.82%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKEAFLT----------------AEHNILMHPFHML 60
           MRPWIAVAYS PVAAATA      + +   +                AEHNILMHPFHML
Sbjct: 136 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPISGTFNFMIVFQAEHNILMHPFHML 195

Query: 61  GVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRLIF 120
           GVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYFGRLIF
Sbjct: 196 GVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIF 255

Query: 121 QYASFNNSRSLHFFLAAWPVVGIWFT 131
           QYASFNNSRSLHFFLAAWPVVGIWFT
Sbjct: 256 QYASFNNSRSLHFFLAAWPVVGIWFT 281

[Close]

BLAST of Spg037771 vs. NCBI nr
Match: QCE14262.1 (photosystem II reaction center D1 protein [Vigna unguiculata])

HSP 1 Score: 216.1 bits (549), Expect = 1.9e-52
Identity = 115/148 (77.70%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFH 60
           MRPWIAVAYS PVAAATA  F   + +   +                  AEHNILMHPFH
Sbjct: 139 MRPWIAVAYSAPVAAATAVFFIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH 198

Query: 61  MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRL 120
           MLGVAGVFGGSLFS MHGSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYFGRL
Sbjct: 199 MLGVAGVFGGSLFSVMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRL 258

Query: 121 IFQYASFNNSRSLHFFLAAWPVVGIWFT 131
           IFQYASFNNSRSLHFFLAAWPVVGIWFT
Sbjct: 259 IFQYASFNNSRSLHFFLAAWPVVGIWFT 286

[Close]

BLAST of Spg037771 vs. ExPASy Swiss-Prot
Match: Q3V554 (Photosystem II protein D1 OS=Acorus calamus OX=4465 GN=psbA PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.3e-55
Identity = 115/148 (77.70%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFH 60
           MRPWIAVAYS PVAAATA      + +   +                  AEHNILMHPFH
Sbjct: 139 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH 198

Query: 61  MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRL 120
           MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYFGRL
Sbjct: 199 MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRL 258

Query: 121 IFQYASFNNSRSLHFFLAAWPVVGIWFT 131
           IFQYASFNNSRSLHFFLAAWPVVGIWFT
Sbjct: 259 IFQYASFNNSRSLHFFLAAWPVVGIWFT 286

[Close]

BLAST of Spg037771 vs. ExPASy Swiss-Prot
Match: A4QJI0 (Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.3e-55
Identity = 115/148 (77.70%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFH 60
           MRPWIAVAYS PVAAATA      + +   +                  AEHNILMHPFH
Sbjct: 139 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH 198

Query: 61  MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRL 120
           MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYFGRL
Sbjct: 199 MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRL 258

Query: 121 IFQYASFNNSRSLHFFLAAWPVVGIWFT 131
           IFQYASFNNSRSLHFFLAAWPVVGIWFT
Sbjct: 259 IFQYASFNNSRSLHFFLAAWPVVGIWFT 286

[Close]

BLAST of Spg037771 vs. ExPASy Swiss-Prot
Match: A4QJZ9 (Photosystem II protein D1 OS=Arabis hirsuta OX=78191 GN=psbA PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.3e-55
Identity = 115/148 (77.70%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFH 60
           MRPWIAVAYS PVAAATA      + +   +                  AEHNILMHPFH
Sbjct: 139 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH 198

Query: 61  MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRL 120
           MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYFGRL
Sbjct: 199 MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRL 258

Query: 121 IFQYASFNNSRSLHFFLAAWPVVGIWFT 131
           IFQYASFNNSRSLHFFLAAWPVVGIWFT
Sbjct: 259 IFQYASFNNSRSLHFFLAAWPVVGIWFT 286

[Close]

BLAST of Spg037771 vs. ExPASy Swiss-Prot
Match: P83755 (Photosystem II protein D1 OS=Arabidopsis thaliana OX=3702 GN=psbA PE=1 SV=2)

HSP 1 Score: 215.3 bits (547), Expect = 4.3e-55
Identity = 115/148 (77.70%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFH 60
           MRPWIAVAYS PVAAATA      + +   +                  AEHNILMHPFH
Sbjct: 139 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH 198

Query: 61  MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRL 120
           MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYFGRL
Sbjct: 199 MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRL 258

Query: 121 IFQYASFNNSRSLHFFLAAWPVVGIWFT 131
           IFQYASFNNSRSLHFFLAAWPVVGIWFT
Sbjct: 259 IFQYASFNNSRSLHFFLAAWPVVGIWFT 286

[Close]

BLAST of Spg037771 vs. ExPASy Swiss-Prot
Match: Q7FNT3 (Photosystem II protein D1 OS=Atropa belladonna OX=33113 GN=psbA PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.3e-55
Identity = 115/148 (77.70%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFH 60
           MRPWIAVAYS PVAAATA      + +   +                  AEHNILMHPFH
Sbjct: 139 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH 198

Query: 61  MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRL 120
           MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYFGRL
Sbjct: 199 MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRL 258

Query: 121 IFQYASFNNSRSLHFFLAAWPVVGIWFT 131
           IFQYASFNNSRSLHFFLAAWPVVGIWFT
Sbjct: 259 IFQYASFNNSRSLHFFLAAWPVVGIWFT 286

[Close]

BLAST of Spg037771 vs. ExPASy TrEMBL
Match: A0A1Y3BWW6 (32 kDa thylakoid membrane protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr00c0165g0572191 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 8.9e-56
Identity = 117/131 (89.31%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKE-AFLTAEHNILMHPFHMLGVAGVFGGSLFSAMH 60
           MRPWIAVAYS PVAAATA      + + +FL AEHNILMHPFHMLGVAGVFGGSLFSAMH
Sbjct: 111 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFLMAEHNILMHPFHMLGVAGVFGGSLFSAMH 170

Query: 61  GSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRLIFQYASFNNSRSLHFFL 120
           GSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYFGRLIFQYASFNNSRSLHFFL
Sbjct: 171 GSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFL 230

Query: 121 AAWPVVGIWFT 131
           AAWPVVGIWFT
Sbjct: 231 AAWPVVGIWFT 241

[Close]

BLAST of Spg037771 vs. ExPASy TrEMBL
Match: M0ZYJ3 (32 kDa thylakoid membrane protein OS=Solanum tuberosum OX=4113 GN=psbA PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.2e-53
Identity = 118/144 (81.94%), Postives = 118/144 (81.94%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATA---------RRFSQLVKEAF-----LTAEHNILMHPFHMLGV 60
           MRPWIAVAYS PVAAATA           FS      F       AEHNILMHPFHMLGV
Sbjct: 139 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGNSGTFNFMIVFQAEHNILMHPFHMLGV 198

Query: 61  AGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRLIFQY 120
           AGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYFGRLIFQY
Sbjct: 199 AGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQY 258

Query: 121 ASFNNSRSLHFFLAAWPVVGIWFT 131
           ASFNNSRSLHFFLAAWPVVGIWFT
Sbjct: 259 ASFNNSRSLHFFLAAWPVVGIWFT 282

[Close]

BLAST of Spg037771 vs. ExPASy TrEMBL
Match: A0A7G5CJ73 (Photosystem II protein D1 OS=Prunus armeniaca OX=36596 GN=matK PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.1e-53
Identity = 116/148 (78.38%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKEA------------------FLTAEHNILMHPFH 60
           MRPWIAVAYS PVAAATA      + +                    L AEHNILMHPFH
Sbjct: 145 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVLQAEHNILMHPFH 204

Query: 61  MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRL 120
           MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYFGRL
Sbjct: 205 MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRL 264

Query: 121 IFQYASFNNSRSLHFFLAAWPVVGIWFT 131
           IFQYASFNNSRSLHFFLAAWPVVGIWFT
Sbjct: 265 IFQYASFNNSRSLHFFLAAWPVVGIWFT 292

[Close]

BLAST of Spg037771 vs. ExPASy TrEMBL
Match: A0A6B9VXS0 (Photosystem II protein D1 OS=Allium cyathophorum OX=105302 GN=psbA PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 9.2e-53
Identity = 115/146 (78.77%), Postives = 118/146 (80.82%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKEAFLT----------------AEHNILMHPFHML 60
           MRPWIAVAYS PVAAATA      + +   +                AEHNILMHPFHML
Sbjct: 139 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPISGTFNFMIVFQAEHNILMHPFHML 198

Query: 61  GVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRLIF 120
           GVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYFGRLIF
Sbjct: 199 GVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIF 258

Query: 121 QYASFNNSRSLHFFLAAWPVVGIWFT 131
           QYASFNNSRSLHFFLAAWPVVGIWFT
Sbjct: 259 QYASFNNSRSLHFFLAAWPVVGIWFT 284

[Close]

BLAST of Spg037771 vs. ExPASy TrEMBL
Match: A0A5N6M758 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_36693 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 9.2e-53
Identity = 115/148 (77.70%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKEA------------------FLTAEHNILMHPFH 60
           MRPWIAVAYS PVAAATA     L+ +                      AEHNILMHPFH
Sbjct: 13  MRPWIAVAYSTPVAAATAVFLIYLIGQGRFSDGMPLGISGTFNFMIVFQAEHNILMHPFH 72

Query: 61  MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRL 120
           MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE+ NIVAAHGYFGRL
Sbjct: 73  MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEESYNIVAAHGYFGRL 132

Query: 121 IFQYASFNNSRSLHFFLAAWPVVGIWFT 131
           IFQYASFNNSRSLHFFLAAWPVVGIWFT
Sbjct: 133 IFQYASFNNSRSLHFFLAAWPVVGIWFT 160

[Close]

BLAST of Spg037771 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 215.3 bits (547), Expect = 3.0e-56
Identity = 115/148 (77.70%), Postives = 118/148 (79.73%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKEAFLT------------------AEHNILMHPFH 60
           MRPWIAVAYS PVAAATA      + +   +                  AEHNILMHPFH
Sbjct: 139 MRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFH 198

Query: 61  MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRL 120
           MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEET NIVAAHGYFGRL
Sbjct: 199 MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRL 258

Query: 121 IFQYASFNNSRSLHFFLAAWPVVGIWFT 131
           IFQYASFNNSRSLHFFLAAWPVVGIWFT
Sbjct: 259 IFQYASFNNSRSLHFFLAAWPVVGIWFT 286

[Close]

BLAST of Spg037771 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 65.9 bits (159), Expect = 3.0e-11
Identity = 44/148 (29.73%), Postives = 76/148 (51.35%), Query Frame = 0


Query: 1   MRPWIAVAYSVPVAAATARRFSQLVKEA------------------FLTAEHNILMHPFH 60
           +RP+ A+A+S P+A   +      + ++                  F    HN  ++PFH
Sbjct: 139 LRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFH 198

Query: 61  MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETDNIVAAHGYFGRL 120
           M+GVAGV G +L  A+HG+ V ++L  E  +  +    +   Q EET ++V A+ ++ ++
Sbjct: 199 MMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQI 258

Query: 121 IFQYASFNNSRSLHFFLAAWPVVGIWFT 131
                +F+N R LHFF+   PV G+W +
Sbjct: 259 F--GVAFSNKRWLHFFMLFVPVTGLWMS 283

The following BLAST results are available for this feature:

BLAST of Spg037771 vs. NCBI nr


Match Name	E-value	Identity	Description
OTF84607.1	1.8e-55	89.31	putative photosynthetic reaction centre, L/M [Helianthus annuus]	[more]
QMV49325.1	1.5e-52	78.38	maturase K [Prunus armeniaca]	[more]
KAD3068813.1	1.9e-52	77.70	hypothetical protein E3N88_36693 [Mikania micrantha]	[more]
YP_009869173.1	1.9e-52	78.77	photosystem II protein D1 [Allium macranthum] >QKJ80677.1 photosystem II protein...	[more]
QCE14262.1	1.9e-52	77.70	photosystem II reaction center D1 protein [Vigna unguiculata]	[more]

BLAST of Spg037771 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3V554	4.3e-55	77.70	Photosystem II protein D1 OS=Acorus calamus OX=4465 GN=psbA PE=3 SV=1	[more]
A4QJI0	4.3e-55	77.70	Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1	[more]
A4QJZ9	4.3e-55	77.70	Photosystem II protein D1 OS=Arabis hirsuta OX=78191 GN=psbA PE=3 SV=1	[more]
P83755	4.3e-55	77.70	Photosystem II protein D1 OS=Arabidopsis thaliana OX=3702 GN=psbA PE=1 SV=2	[more]
Q7FNT3	4.3e-55	77.70	Photosystem II protein D1 OS=Atropa belladonna OX=33113 GN=psbA PE=3 SV=1	[more]

BLAST of Spg037771 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1Y3BWW6	8.9e-56	89.31	32 kDa thylakoid membrane protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr00c...	[more]
M0ZYJ3	3.2e-53	81.94	32 kDa thylakoid membrane protein OS=Solanum tuberosum OX=4113 GN=psbA PE=3 SV=1	[more]
A0A7G5CJ73	7.1e-53	78.38	Photosystem II protein D1 OS=Prunus armeniaca OX=36596 GN=matK PE=3 SV=1	[more]
A0A6B9VXS0	9.2e-53	78.77	Photosystem II protein D1 OS=Allium cyathophorum OX=105302 GN=psbA PE=3 SV=1	[more]
A0A5N6M758	9.2e-53	77.70	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_36693 PE=3 SV=1	[more]

BLAST of Spg037771 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00020.1	3.0e-56	77.70	photosystem II reaction center protein A	[more]
ATCG00270.1	3.0e-11	29.73	photosystem II reaction center protein D	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 20..137 e-value: 1.4E-16 score: 62.6
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 1..130
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 30..130 e-value: 4.0E-28 score: 98.3
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 1..18 coord: 31..132
IPR000484	Photosynthetic reaction centre, L/M	PROSITE	PS00244	REACTION_CENTER	coord: 35..61
None	No IPR available	PANTHER	PTHR33149:SF30	PHOTOSYNTHETIC REACTION CENTRE, L/M-RELATED	coord: 1..18 coord: 31..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg037771.1	Spg037771.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009635	response to herbicide
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
molecular_function	GO:0010242	oxygen evolving activity