Spg037767 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg037767
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Photosystem II protein D1
Location	scaffold27: 100075 .. 101444 (-)
RNA-Seq Expression	Spg037767
Synteny	Spg037767

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATTCGAGCGTTGACGTATTTTCGTCAGGGCGACTAATGAGATTAGAAAAAGAGGACTCATTTTAATTAACTAAATAACATTTTATTCCAGTAAAGTAATAAAGAATAATAATACGAATGGCACCTTGATTCTATATCATCTTTTTCTGTATCATAGGAATCAAATAATAATTCTTCTTATGATTCTTGTTGTTTCGATTTTTTTTGTTTCAAAAACATTTTGTGTTTTCAAATCAAATAAATTCCGATTCATTGGAACAAAAAAAGCCCGGCTAGGTACTGACCAGGCCAGGCCGTGGAAATAAAAAGAAAAGGACTTTTGGGATGAAATAAAATAAAAGAGGTACTTTATTTTTATTTATTTAGAAATATATATTTTTAGTAATCTTTAATATATTGGTATTATTTATATATTAGGATTGGAGATATCTTTTCTTTTGAGCCCTTACTTTATCTAATTTATCTAAATGGAATCGCTGATAAAAGTTTTTATCGATGGATATCCATCGATATATCTAGATAATTATATATATCGATATAATTGTCCTGCCTAGGGAAGTAACTGCGTTTTAGATGTATACATAGGTAAAGCCGTGTGCAATGAAAAATGCAAGCACGGTTTGGGGAGGGATTTTTTTTACTTATTTTTTAACAAGTAAATTATCTACTCCATCCGACTAGTTCCGGGTTCGAGTCCCGGGCAACCCATATTAATTATAATATTGAACTAATTTATCATATCGAAATAATATATAAAGTCTAATTCGATTTTTTAATGAATGAAAGAAAAGAATTAAAAAAAAAGAAAATTCTGATTAATCTAGATAACTAATAAATAAAAGCATAGATATATATTTATATTTATGGATGTTGATATTGGTTGACATGGGTATATAAGTCATGTTATACTGTTGAATAACAAGCCCTTCATTTTCTATTTATAGAGAATTCATGTGCTTGGGAGTCCAGATTAATGATTAAATAAACCCAGATTTGACCATGACTGCAATTTTAGAGAGACGCGAAAGCCTATGGGGTCCTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATTGCCTTCATTGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATCCCTACTTCTGCAGCTATCGGGTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTTTGTTCTACACTTCTGACTTGGTGTAG

mRNA sequence

ATGAAAATTCGAGCGTTGACGTATTTTCCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATCCCTACTTCTGCAGCTATCGGGTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTTTGTTCTACACTTCTGACTTGGTGTAG

Coding sequence (CDS)

ATGAAAATTCGAGCGTTGACGTATTTTCCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATCCCTACTTCTGCAGCTATCGGGTTGCACTTTTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTTTGTTCTACACTTCTGACTTGGTGTAG

Protein sequence

MKIRALTYFPPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELILFYTSDLV

Homology

[Close]

BLAST of Spg037767 vs. NCBI nr
Match: RYR49286.1 (hypothetical protein Ahy_A07g035707 [Arachis hypogaea])

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFYTSDL 78
           L Y   L
Sbjct: 116 LEYRCGL 122

[Close]

BLAST of Spg037767 vs. NCBI nr
Match: YP_009256819.1 (D1 reaction center protein of photosystem II [Closterium baillyanum] >ANI25764.1 D1 reaction center protein of photosystem II [Closterium baillyanum])

HSP 1 Score: 131.0 bits (328), Expect = 4.6e-27
Identity = 59/63 (93.65%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAI+PTSAAIG+HFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIVPTSAAIGMHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFY 74
           +F+
Sbjct: 116 VFH 118

[Close]

BLAST of Spg037767 vs. NCBI nr
Match: YP_004563847.1 (photosystem II protein D1 [Nelumbo lutea] >ACN49303.1 photosystem II protein D1 [Nelumbo lutea])

HSP 1 Score: 130.6 bits (327), Expect = 6.0e-27
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFYT 75
           + ++
Sbjct: 116 VLHS 119

[Close]

BLAST of Spg037767 vs. NCBI nr
Match: ACN49388.1 (photosystem II protein D1 [Nelumbo nucifera])

HSP 1 Score: 130.6 bits (327), Expect = 6.0e-27
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFYT 75
           + ++
Sbjct: 116 VLHS 119

[Close]

BLAST of Spg037767 vs. NCBI nr
Match: CUR07599.1 (psbA [Acacia tysonii])

HSP 1 Score: 130.2 bits (326), Expect = 7.8e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFY 74
           + +
Sbjct: 116 ILH 118

[Close]

BLAST of Spg037767 vs. ExPASy Swiss-Prot
Match: Q3V554 (Photosystem II protein D1 OS=Acorus calamus OX=4465 GN=psbA PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-29
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFY 74
           + +
Sbjct: 116 VLH 118

[Close]

BLAST of Spg037767 vs. ExPASy Swiss-Prot
Match: Q85C23 (Photosystem II protein D1 OS=Adiantum capillus-veneris OX=13818 GN=psbA PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-29
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFY 74
           + +
Sbjct: 116 VLH 118

[Close]

BLAST of Spg037767 vs. ExPASy Swiss-Prot
Match: A4QJ96 (Photosystem II protein D1 OS=Aethionema cordifolium OX=434059 GN=psbA PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-29
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFY 74
           + +
Sbjct: 116 VLH 118

[Close]

BLAST of Spg037767 vs. ExPASy Swiss-Prot
Match: A4QJI0 (Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-29
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFY 74
           + +
Sbjct: 116 VLH 118

[Close]

BLAST of Spg037767 vs. ExPASy Swiss-Prot
Match: A1E9Y8 (Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-29
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFY 74
           + +
Sbjct: 116 VLH 118

[Close]

BLAST of Spg037767 vs. ExPASy TrEMBL
Match: A0A445CEA9 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A07g035707 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.9e-28
Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFYTSDL 78
           L Y   L
Sbjct: 116 LEYRCGL 122

[Close]

BLAST of Spg037767 vs. ExPASy TrEMBL
Match: A0A191T5U5 (Photosystem II protein D1 OS=Closterium baillyanum OX=1416941 GN=psbA PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.2e-27
Identity = 59/63 (93.65%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAI+PTSAAIG+HFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIVPTSAAIGMHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFY 74
           +F+
Sbjct: 116 VFH 118

[Close]

BLAST of Spg037767 vs. ExPASy TrEMBL
Match: F6GPX8 (Photosystem II protein D1 OS=Nelumbo nucifera OX=4432 GN=psbA PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.9e-27
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFYT 75
           + ++
Sbjct: 116 VLHS 119

[Close]

BLAST of Spg037767 vs. ExPASy TrEMBL
Match: F6GPP3 (Photosystem II protein D1 OS=Nelumbo lutea OX=4431 GN=psbA PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.9e-27
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFYT 75
           + ++
Sbjct: 116 VLHS 119

[Close]

BLAST of Spg037767 vs. ExPASy TrEMBL
Match: A0A1D0CBZ2 (Photosystem II protein D1 OS=Acacia tysonii OX=1280829 GN=psbA PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.8e-27
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFY 74
           + +
Sbjct: 116 ILH 118

[Close]

BLAST of Spg037767 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 129.8 bits (325), Expect = 9.5e-31
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 11  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 70
           PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI
Sbjct: 56  PPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELI 115

Query: 71  LFY 74
           + +
Sbjct: 116 VLH 118

The following BLAST results are available for this feature:

BLAST of Spg037767 vs. NCBI nr


Match Name	E-value	Identity	Description
RYR49286.1	1.2e-27	94.03	hypothetical protein Ahy_A07g035707 [Arachis hypogaea]	[more]
YP_009256819.1	4.6e-27	93.65	D1 reaction center protein of photosystem II [Closterium baillyanum] >ANI25764.1...	[more]
YP_004563847.1	6.0e-27	93.75	photosystem II protein D1 [Nelumbo lutea] >ACN49303.1 photosystem II protein D1 ...	[more]
ACN49388.1	6.0e-27	93.75	photosystem II protein D1 [Nelumbo nucifera]	[more]
CUR07599.1	7.8e-27	95.24	psbA [Acacia tysonii]	[more]

BLAST of Spg037767 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3V554	1.3e-29	95.24	Photosystem II protein D1 OS=Acorus calamus OX=4465 GN=psbA PE=3 SV=1	[more]
Q85C23	1.3e-29	95.24	Photosystem II protein D1 OS=Adiantum capillus-veneris OX=13818 GN=psbA PE=2 SV=...	[more]
A4QJ96	1.3e-29	95.24	Photosystem II protein D1 OS=Aethionema cordifolium OX=434059 GN=psbA PE=3 SV=1	[more]
A4QJI0	1.3e-29	95.24	Photosystem II protein D1 OS=Aethionema grandiflorum OX=72657 GN=psbA PE=3 SV=1	[more]
A1E9Y8	1.3e-29	95.24	Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1	[more]

BLAST of Spg037767 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445CEA9	5.9e-28	94.03	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A07g035707 PE=3 SV=1	[more]
A0A191T5U5	2.2e-27	93.65	Photosystem II protein D1 OS=Closterium baillyanum OX=1416941 GN=psbA PE=3 SV=1	[more]
F6GPX8	2.9e-27	93.75	Photosystem II protein D1 OS=Nelumbo nucifera OX=4432 GN=psbA PE=3 SV=1	[more]
F6GPP3	2.9e-27	93.75	Photosystem II protein D1 OS=Nelumbo lutea OX=4431 GN=psbA PE=3 SV=1	[more]
A0A1D0CBZ2	3.8e-27	95.24	Photosystem II protein D1 OS=Acacia tysonii OX=1280829 GN=psbA PE=3 SV=1	[more]

BLAST of Spg037767 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00020.1	9.5e-31	95.24	photosystem II reaction center protein A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 10..73 e-value: 9.0E-10 score: 38.2
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 11..72
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 15..76 e-value: 6.6E-6 score: 27.9
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 8..73
None	No IPR available	PANTHER	PTHR33149:SF30	PHOTOSYNTHETIC REACTION CENTRE, L/M-RELATED	coord: 11..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg037767.1	Spg037767.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009635	response to herbicide
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
molecular_function	GO:0010242	oxygen evolving activity