Spg037546 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg037546
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Poly(A)-specific ribonuclease
Location	scaffold11: 31586818 .. 31589962 (+)
RNA-Seq Expression	Spg037546
Synteny	Spg037546

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGTTGCGGTGCTGTGGGTGGCGTTCGACGTTGTGCATGCTGGTTGGTGGTATTCACGAGTCGGTTTGTGGCGGAGCTCGTCAGAGCTTGGCTTCAAATGATGCAGTAGTCACCGGAGTTAATGGTGGTAGATGTAGGATGGAGGAAGAAGAAAGTGGTGGAGGTCACTTTGTGTTTATAGAAAGAGGGTTTTATGGGGAAAGAGAGAGAAAAATCGCTTCTAATCTTGTTAACATGGAGTTTTGAACAAAAAAAAAAAAAAAAAAAAAAAAACCTCCTCCCAATTTTAATTCTCTCTTTCCTCCTCTTTTCTGGATTTTCAAAACTTCCTTCTAATTTGATTTTTCATCTAATTGTTGTTCTACCGCCTCTTTCAATTCATGGTTTTCCCTTTTATAAGCCATGAGTATACTTTAAAATAGTAAAAAAAAAAAGTGAAAGAAAGTGGAAATGAGGGTGAGAGAGCTAGATTTTGATGGAGAAAGATATGTTAGTGGAGAAGAATAAGAAAAATAAAGAGACAGTGCATTTGGAATTGCAGTTGAAACACTTAATCTATTTTGAAAAAATCCTAACCATTTTAAGTATTTGGTAATACATATATTTTTAAAATTTATTGAAAATCACTTTTTAAATCCTTTGATTTCTAAGATCTCTTCAACAGTAGCTTCTGATTTTAACTTTCCAAATAATCTGACATCTTTTTTTAACGATTTCTCAATATGCTCACTATATCCTTCTGTAATTTTTTTAAGTTCCTCTTTAATATATTGAAGCTTCTTTGTTAGATTTGTTTTCAATCGCTAGCCTCGCATATCAAAGCTTCCGTACAATTTCATCATCATTGAACTTGAAGCAAATTCAAGCAAGAATATTAAAAATTAGAAAATATAATTTATAATTTGAACTATAAAAATTTCAAATAATTAACTTACTACAATTTATATTCAATATCAACATATCAAAAATTAAAATAATATGTCTACTTTGGTCATATAAATAATTATTTTCACATTTAAGAATACAATCCAGCTACAAGTTTTATGAGAACAAAATAAATCGTATTATTTTTATTTTTGTCTTATATATTTTTGTCTGTACTTAATTTGGAATAACATTTGTTCATTATATAATAGTATAGAACAACTATTCTCTTTAGCTTTTTATTGTATAATTTAAAGTTATAAGAAAACATAATTTTTAATTTAAACTAAAAATTCAAAACAATTAACTTATTAAAAAAAATCAACATATAAATAATTAAAATAATATGTCTACTTTAGTCATTATAACTAAATCATGACAATTTCATTTGAATTTACCAAACGCTATGAGCTGTTTTCTTTATGTTTAAAATTAAAATTTACAGAAGGCTAATTTGCTTCGTATAACAACTGATTTTTCCAGAAGTATAGTTACTGACAATTATTTATTGGAGCCTAAAAAATGTTAAGAAAAAGGTGGTTAAGAGATTTTTTTTCGTATTTTTTTTCTAACAAATAGCAAATATAAAAGAATAAAAAAAATATATAATAATAAAATATAATAAATAAAAGTGGTAATAATACATATTAAAAAAAATTAAGTCAGACCAAATACAGTGTCTACAATGATATAATTGAGGGTATTATTTATAATAAAAGTTGAAGGAGGTAAAAGGTTTATTTCCATTATATAGTTCCATCGACCAGTGGTTATCGAAATTTGTCTCCCGCTCCCGCCTTTCTCTTCACTCTGTACTCTCTGGTTTGGTTGCTTCTTCCTCGTTGGCGACTGGCGAGGACTTGGGTGTGCTGCGCTTTCGTTGTCGGTATGTATCTTCTCATCTGCTTTTTCTAATATATATATATATATATCCCTTTTTCTTTCAACCATTTTCGTATTTTTCATTTTCGATATTTTTCATTTGCAGGTGCTTCAACGTCAAAACTCAAAACTCATTAACCTCATCTCTTTCACTTTCATCCCTCCATTTTCAGGTATATTATTCATTCTTTTACGCTTCCGCCGGCTTCATTTTTTACTTTTCAAATTCATGATCATATCACTCTAAAAAAATCAAATATATACACTACATAATAATATCAACATTAATTAATTAATTATAAGAAGGAAAAATTTACTCACTCCATTCAGCATTTGACACGTAATGATCATTTAATAATATCATATATTTTATTTTATGGATCTCATATCATTCTTAAATGTAATGACTCATGTATTGTATTTTCCAAATATTTTTAACAGATCAAAGAGAACAAAAACCTTGACAATCATGACTTTGGTTCGACAAGTTTGGTCTCACAATCTCCCACAAGAGCTGGCCCTTCTCAACGCCTGTCTTTCACAGTTTCCTGTGGTCGCCTTCGACACCGAGTTCCCCGGGTTTCTCCGATGCACTCCGAGAGGTGCTCCACAGGAACACTTCTATGAGGATCTCAAATTCAATGTCAACCATTTGAAGATTCTCCAACTGGGTCTCACTCTTGCCAACGAGAGTGGCGATGTTGCCATGACATGGGAGTTCAACTTCAGTGATTTCGATGAAACCACAGACCTCCACAGTCCAACATCCATCCAATTCTTGAAAAGTAAAGGCTTCGATTTCAACAAACATAGGAACCAAGGAATCCCATCTCCTCAATTTCGACGCGCATTTCTTCCCATCTGTTGCAGCAATCGCATTGCCAAATGGCTCACCTTCCACGGCTTCTACGACGTCGCTTACCTTCTCAAGCTACTCATGATCAAAACCATGCCGCAATCCCTCGCCGTCTTCGCCGCCAAAGCCCAGCGTCTCCTCGGCACCGTCAGCGACCTCAAGCACATCATTCGCAACTGCGATTACTTACTCAACGGCGAGCTCGGACTTGAAAAACTCGCCAAGTTACTCAATGTCGAGCGGAACGGCACTGCCCACCATGCTGGCTCCGACAGTCTCTTGACCGCTTCTGTCTACGTGAAGATGAAGAAGAGGTTCGAGTTTTCGCCGGAGCATTGCGACGGGTTCTTATACGGTCTGCATTACAGAATCCGACGACGTCCAGTAATTGGGAACGTCGTCATTCCCCCATTTCGTCAACCGCCTGTTAGTGTTAGGCATAGTTTGTTTTCCGGTCATGTTATGGTTTCCGGTTAA

mRNA sequence

ATGGGTTTGTTGCGGTGCTGTGGGTGGCGTTCGACGTTGTGCATGCTGGTTGGTGGTATTCACGAGTCGGTTTGTGGCGGAGCTCGTCAGAGCTTGGCTTCAAATGATGCAGTAGTCACCGGAGTTAATGGTGGTAGATGTAGGATGGAGGAAGAAGAAAGTGGTGGAGGTCACTTTTGGTTATCGAAATTTGTCTCCCGCTCCCGCCTTTCTCTTCACTCTGTACTCTCTGGTTTGGTTGCTTCTTCCTCGTTGGCGACTGGCGAGGACTTGGGTGTGCTGCGCTTTCGTTGTCGATCAAAGAGAACAAAAACCTTGACAATCATGACTTTGGTTCGACAAGTTTGGTCTCACAATCTCCCACAAGAGCTGGCCCTTCTCAACGCCTGTCTTTCACAGTTTCCTGTGGTCGCCTTCGACACCGAGTTCCCCGGGTTTCTCCGATGCACTCCGAGAGGTGCTCCACAGGAACACTTCTATGAGGATCTCAAATTCAATGTCAACCATTTGAAGATTCTCCAACTGGGTCTCACTCTTGCCAACGAGAGTGGCGATGTTGCCATGACATGGGAGTTCAACTTCAGTGATTTCGATGAAACCACAGACCTCCACAGTCCAACATCCATCCAATTCTTGAAAAGTAAAGGCTTCGATTTCAACAAACATAGGAACCAAGGAATCCCATCTCCTCAATTTCGACGCGCATTTCTTCCCATCTGTTGCAGCAATCGCATTGCCAAATGGCTCACCTTCCACGGCTTCTACGACGTCGCTTACCTTCTCAAGCTACTCATGATCAAAACCATGCCGCAATCCCTCGCCGTCTTCGCCGCCAAAGCCCAGCGTCTCCTCGGCACCGTCAGCGACCTCAAGCACATCATTCGCAACTGCGATTACTTACTCAACGGCGAGCTCGGACTTGAAAAACTCGCCAAGTTACTCAATGTCGAGCGGAACGGCACTGCCCACCATGCTGGCTCCGACAGTCTCTTGACCGCTTCTGTCTACGTGAAGATGAAGAAGAGGTTCGAGTTTTCGCCGGAGCATTGCGACGGGTTCTTATACGGTCTGCATTACAGAATCCGACGACGTCCAGTAATTGGGAACGTCGTCATTCCCCCATTTCGTCAACCGCCTGTTAGTGTTAGGCATAGTTTGTTTTCCGGTCATGTTATGGTTTCCGGTTAA

Coding sequence (CDS)

ATGGGTTTGTTGCGGTGCTGTGGGTGGCGTTCGACGTTGTGCATGCTGGTTGGTGGTATTCACGAGTCGGTTTGTGGCGGAGCTCGTCAGAGCTTGGCTTCAAATGATGCAGTAGTCACCGGAGTTAATGGTGGTAGATGTAGGATGGAGGAAGAAGAAAGTGGTGGAGGTCACTTTTGGTTATCGAAATTTGTCTCCCGCTCCCGCCTTTCTCTTCACTCTGTACTCTCTGGTTTGGTTGCTTCTTCCTCGTTGGCGACTGGCGAGGACTTGGGTGTGCTGCGCTTTCGTTGTCGATCAAAGAGAACAAAAACCTTGACAATCATGACTTTGGTTCGACAAGTTTGGTCTCACAATCTCCCACAAGAGCTGGCCCTTCTCAACGCCTGTCTTTCACAGTTTCCTGTGGTCGCCTTCGACACCGAGTTCCCCGGGTTTCTCCGATGCACTCCGAGAGGTGCTCCACAGGAACACTTCTATGAGGATCTCAAATTCAATGTCAACCATTTGAAGATTCTCCAACTGGGTCTCACTCTTGCCAACGAGAGTGGCGATGTTGCCATGACATGGGAGTTCAACTTCAGTGATTTCGATGAAACCACAGACCTCCACAGTCCAACATCCATCCAATTCTTGAAAAGTAAAGGCTTCGATTTCAACAAACATAGGAACCAAGGAATCCCATCTCCTCAATTTCGACGCGCATTTCTTCCCATCTGTTGCAGCAATCGCATTGCCAAATGGCTCACCTTCCACGGCTTCTACGACGTCGCTTACCTTCTCAAGCTACTCATGATCAAAACCATGCCGCAATCCCTCGCCGTCTTCGCCGCCAAAGCCCAGCGTCTCCTCGGCACCGTCAGCGACCTCAAGCACATCATTCGCAACTGCGATTACTTACTCAACGGCGAGCTCGGACTTGAAAAACTCGCCAAGTTACTCAATGTCGAGCGGAACGGCACTGCCCACCATGCTGGCTCCGACAGTCTCTTGACCGCTTCTGTCTACGTGAAGATGAAGAAGAGGTTCGAGTTTTCGCCGGAGCATTGCGACGGGTTCTTATACGGTCTGCATTACAGAATCCGACGACGTCCAGTAATTGGGAACGTCGTCATTCCCCCATTTCGTCAACCGCCTGTTAGTGTTAGGCATAGTTTGTTTTCCGGTCATGTTATGGTTTCCGGTTAA

Protein sequence

MGLLRCCGWRSTLCMLVGGIHESVCGGARQSLASNDAVVTGVNGGRCRMEEEESGGGHFWLSKFVSRSRLSLHSVLSGLVASSSLATGEDLGVLRFRCRSKRTKTLTIMTLVRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRGAPQEHFYEDLKFNVNHLKILQLGLTLANESGDVAMTWEFNFSDFDETTDLHSPTSIQFLKSKGFDFNKHRNQGIPSPQFRRAFLPICCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKAQRLLGTVSDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKMKKRFEFSPEHCDGFLYGLHYRIRRRPVIGNVVIPPFRQPPVSVRHSLFSGHVMVSG

Homology

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BLAST of Spg037546 vs. NCBI nr
Match: XP_038890962.1 (putative CCR4-associated factor 1 homolog 8 [Benincasa hispida])

HSP 1 Score: 376.3 bits (965), Expect = 3.2e-100
Identity = 181/255 (70.98%), Postives = 211/255 (82.75%), Query Frame = 0


Query: 109 MTLVRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRGAPQEHFYEDLKFNVN 168
           M LVRQVWSHNL +ELA+ N  LS+FPV+  DTEFPGF+R TPRGAP+EH Y+DLKFN+N
Sbjct: 1   MDLVRQVWSHNLYRELAIFNVYLSRFPVIVIDTEFPGFIRSTPRGAPKEHLYQDLKFNLN 60

Query: 169 HLKILQLGLTLANESGDVAMTWEFNFSDFDETTDLHSPTSIQFLKSKGFDFNKHRNQGIP 228
           HLKILQLGLTL +E+G+V MTWEF FSDFDE TDL +PTSIQFLK+KG DF K R +GI 
Sbjct: 61  HLKILQLGLTLVDENGNVGMTWEFTFSDFDEQTDLSNPTSIQFLKNKGLDFKKQREEGIR 120

Query: 229 SPQFRRAFLPICCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKAQRLLGTVS 288
           S +F+ AFLPI CSNRI KW+TFHG YDVAYLLKL++IK+MP+S+  FA  A+  LGTVS
Sbjct: 121 SAEFQLAFLPILCSNRIVKWVTFHGIYDVAYLLKLMVIKSMPESVVEFAIIARCFLGTVS 180

Query: 289 DLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHH-AGSDSLLTASVYVKMKKRFEFSP 348
           DLK+IIRNC+YLLNGELGL+KLAKLLN+  +   HH AG DSLL AS Y KMKK  EFS 
Sbjct: 181 DLKYIIRNCEYLLNGELGLKKLAKLLNIVNDIPTHHLAGFDSLLIASAYAKMKKMHEFSS 240

Query: 349 EHCDGFLYGLHYRIR 363
           E+ DGFLYGL+YRIR
Sbjct: 241 ENLDGFLYGLYYRIR 255

[Close]

BLAST of Spg037546 vs. NCBI nr
Match: KAA0044544.1 (putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 359.4 bits (921), Expect = 4.0e-95
Identity = 176/255 (69.02%), Postives = 205/255 (80.39%), Query Frame = 0


Query: 109 MTLVRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRGAPQEHFYEDLKFNVN 168
           M+ VRQVW HNL QEL +LN  L +FPV+A DTEFPGFLR T RGAP+EHFY+DLKFN+N
Sbjct: 1   MSFVRQVWYHNLTQELVILNDQLFKFPVIAMDTEFPGFLRSTLRGAPEEHFYQDLKFNLN 60

Query: 169 HLKILQLGLTLANESGDVAMTWEFNFSDFDETTDLHSPTSIQFLKS-KGFDFNKHRNQGI 228
           HLKILQLGLTL +E+  V ++W F FSDFDE TD  SPTSIQ+LK+ KGF+F K R  GI
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGI 120

Query: 229 PSPQFRRAFLPICCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKAQRLLGTV 288
           PS +FRRAFLPI  SNRI KW+TFHG YDVAYLLKL+MI+TMP+S+  FA  AQR LGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTV 180

Query: 289 SDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKMKKRFEFSP 348
           +DLKH+IRNC+YL+NGELGL++LA+LLNV  N T  + GSDSLL A  Y KMKK  +FS 
Sbjct: 181 NDLKHMIRNCEYLMNGELGLKRLAELLNV--NDTIFNGGSDSLLIALAYAKMKKTLKFSS 240

Query: 349 EHCDGFLYGLHYRIR 363
           E  DGFLYG HYRIR
Sbjct: 241 EITDGFLYGFHYRIR 253

[Close]

BLAST of Spg037546 vs. NCBI nr
Match: XP_008454486.1 (PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo] >TYK17039.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 358.6 bits (919), Expect = 6.9e-95
Identity = 175/255 (68.63%), Postives = 206/255 (80.78%), Query Frame = 0


Query: 109 MTLVRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRGAPQEHFYEDLKFNVN 168
           M+ VR+VW HN  QELA+LN  L +FPV+A DTEFPGFLR TPRGAP+EHFY+DLKFN+N
Sbjct: 1   MSFVRKVWYHNFIQELAILNDQLFKFPVIAMDTEFPGFLRSTPRGAPEEHFYQDLKFNLN 60

Query: 169 HLKILQLGLTLANESGDVAMTWEFNFSDFDETTDLHSPTSIQFLKS-KGFDFNKHRNQGI 228
           HLKILQLGLTL +E+  V ++W F FSDFDE TD  SPTSIQ+LK+ KGF+F K R  GI
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGI 120

Query: 229 PSPQFRRAFLPICCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKAQRLLGTV 288
           PS +FRRAFLPI  SNRI KW+TFHG YDVAYLLKL+MI+TMP+S+  FA  AQR LGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTV 180

Query: 289 SDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKMKKRFEFSP 348
           +DLKH+IRNC+YL+NGELGL++LA+LLNV  N T  + GSDSLL A  Y KMKK  +FS 
Sbjct: 181 NDLKHMIRNCEYLMNGELGLKRLAELLNV--NDTIFNGGSDSLLIALAYAKMKKTLKFSS 240

Query: 349 EHCDGFLYGLHYRIR 363
           E  DGFLYG +YRIR
Sbjct: 241 EITDGFLYGFYYRIR 253

[Close]

BLAST of Spg037546 vs. NCBI nr
Match: XP_004151393.1 (putative CCR4-associated factor 1 homolog 8 [Cucumis sativus])

HSP 1 Score: 336.3 bits (861), Expect = 3.7e-88
Identity = 168/252 (66.67%), Postives = 198/252 (78.57%), Query Frame = 0


Query: 112 VRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRGAPQEHFYEDLKFNVNHLK 171
           VRQVW HNL QELA+LN  L +FPV+  DTEFPGFLR TPRGAPQEH Y+DLKFNVNHLK
Sbjct: 5   VRQVWYHNLAQELAILNDHLFKFPVIVMDTEFPGFLRSTPRGAPQEHLYQDLKFNVNHLK 64

Query: 172 ILQLGLTLANESGDVAMTWEFNFSDFDETTDLHSPTSIQFLK-SKGFDFNKHRNQGIPSP 231
           ILQLGLTL +E+  V ++W F FSDFDE TDL SPTS+Q+LK +KGF+F K R  GIPS 
Sbjct: 65  ILQLGLTLMDENEHVGLSWVFTFSDFDEQTDLSSPTSMQYLKNNKGFEFKKQRKDGIPSA 124

Query: 232 QFRRAFLPICCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKAQRLLGTVSDL 291
           +FRRAFLPI  SNRI KW+TFHG YDVAYLLKL++IK MP+S+  FA  AQR LGTV+DL
Sbjct: 125 EFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMIIKAMPESMVEFAIIAQRFLGTVNDL 184

Query: 292 KHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKMKKRFEFSPEHC 351
           K++I +C+ L+ GELGL++LA+LL+V  N T    GSDSLL A  YVKMKK  + S E+ 
Sbjct: 185 KYMIGHCERLMKGELGLKRLAELLDV--NDTVFSGGSDSLLIALAYVKMKK-LKLSSENT 244

Query: 352 DGFLYGLHYRIR 363
            GFLYG  YRIR
Sbjct: 245 GGFLYGFQYRIR 253

[Close]

BLAST of Spg037546 vs. NCBI nr
Match: KAE8649090.1 (hypothetical protein Csa_014788 [Cucumis sativus])

HSP 1 Score: 325.9 bits (834), Expect = 4.9e-85
Identity = 163/245 (66.53%), Postives = 193/245 (78.78%), Query Frame = 0


Query: 112 VRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRGAPQEHFYEDLKFNVNHLK 171
           VRQVW HNL QELA+LN  L +FPV+  DTEFPGFLR TPRGAPQEH Y+DLKFNVNHLK
Sbjct: 5   VRQVWYHNLAQELAILNDHLFKFPVIVMDTEFPGFLRSTPRGAPQEHLYQDLKFNVNHLK 64

Query: 172 ILQLGLTLANESGDVAMTWEFNFSDFDETTDLHSPTSIQFLK-SKGFDFNKHRNQGIPSP 231
           ILQLGLTL +E+  V ++W F FSDFDE TDL SPTS+Q+LK +KGF+F K R  GIPS 
Sbjct: 65  ILQLGLTLMDENEHVGLSWVFTFSDFDEQTDLSSPTSMQYLKNNKGFEFKKQRKDGIPSA 124

Query: 232 QFRRAFLPICCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKAQRLLGTVSDL 291
           +FRRAFLPI  SNRI KW+TFHG YDVAYLLKL++IK MP+S+  FA  AQR LGTV+DL
Sbjct: 125 EFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMIIKAMPESMVEFAIIAQRFLGTVNDL 184

Query: 292 KHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKMKKRFEFSPEHC 351
           K++I +C+ L+ GELGL++LA+LL+V  N T    GSDSLL A  YVKMKK  + S E+ 
Sbjct: 185 KYMIGHCERLMKGELGLKRLAELLDV--NDTVFSGGSDSLLIALAYVKMKK-LKLSSENT 244

Query: 352 DGFLY 356
            GFLY
Sbjct: 245 GGFLY 246

[Close]

BLAST of Spg037546 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 186.0 bits (471), Expect = 8.0e-46
Identity = 106/259 (40.93%), Postives = 148/259 (57.14%), Query Frame = 0


Query: 112 VRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRG---APQEHFYEDLKFNVN 171
           +R+VW+ NL  E+AL+   +  FP VA DTEFPG + C P G      E+ YE LK NVN
Sbjct: 12  IREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV-CRPVGTFKTNTEYHYETLKTNVN 71

Query: 172 HLKILQLGLTLANESGDVA--------MTWEFNFSDFDETTDLHSPTSIQFLKSKGFDFN 231
            LK++QLGLT ++E G++           W+FNF +FD  +D+++  SI+ L+  G DF 
Sbjct: 72  ILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFV 131

Query: 232 KHRNQGIPSPQFRRAFLPI-CCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAK 291
           K+   GI S +F    +      N    W+TFH  YD  YLLKLL  + +P++   F   
Sbjct: 132 KNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEM 191

Query: 292 AQRLLGTVSDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKM 351
                  V D+KH+++ C+ L     GL KLA+LL+VER G  H AGSDSLLT+  + K+
Sbjct: 192 ISVYFPRVYDIKHLMKFCNSLHG---GLNKLAELLDVERVGICHQAGSDSLLTSCTFRKL 251

Query: 352 KKRFEF-SPEHCDGFLYGL 358
           ++ F   S E   G LYGL
Sbjct: 252 QENFFIGSMEKYSGVLYGL 266

[Close]

BLAST of Spg037546 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.3e-45
Identity = 108/258 (41.86%), Postives = 144/258 (55.81%), Query Frame = 0


Query: 112 VRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRG---APQEHFYEDLKFNVN 171
           +R+VW+ NL +E+ L+   +  FP VA DTEFPG +   P G   +  ++ YE LK NVN
Sbjct: 12  IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV-VRPVGTFKSNADYHYETLKTNVN 71

Query: 172 HLKILQLGLTLANESG-------DVAMTWEFNFSDFDETTDLHSPTSIQFLKSKGFDFNK 231
            LK++QLGLT +NE G       D    W+FNF +FD  +D+ +  SI+ LK  G D  K
Sbjct: 72  ILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAK 131

Query: 232 HRNQGIPSPQFRRAFLPI-CCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKA 291
           +   GI S +F    +      N    W+TFH  YD  YLLKLL  + +P S   F    
Sbjct: 132 NTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLI 191

Query: 292 QRLLGTVSDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKMK 351
                TV D+KH+++ C+ L     GL KLA+LL VER G  H AGSDSLLT+  + K+K
Sbjct: 192 NVYFPTVYDIKHLMKFCNSLHG---GLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLK 251

Query: 352 KRFEFSPEH-CDGFLYGL 358
           + F   P H   G LYGL
Sbjct: 252 ENFFVGPLHKYSGVLYGL 265

[Close]

BLAST of Spg037546 vs. ExPASy Swiss-Prot
Match: Q9SHJ0 (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.2e-45
Identity = 97/251 (38.65%), Postives = 147/251 (58.57%), Query Frame = 0


Query: 111 LVRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRGAPQEHFYEDLKFNVNHL 170
           L R+VW  N+ +E+A +  CL +FP++AFDTE+PG +  T   +  +  Y  +K NV + 
Sbjct: 8   LARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENT 67

Query: 171 KILQLGLTLANESGDVAMTWEFNFSDFDETTDLHSPTSIQFLKSKGFDFNKHRNQGIPSP 230
           K++Q G TL N  G++   WE NFS+F + +D  +  SI+FL+  G D  K R++G+   
Sbjct: 68  KLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGV--D 127

Query: 231 QFRRAFLP----ICCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKAQRLLGT 290
            F   F P    +  S +  +++TF G YD AY L +L    +P++   FA +  ++ G 
Sbjct: 128 MFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQ 187

Query: 291 VSDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKMKKRFEFS 350
           V D K +   C+  L   LGL KLA+LL + R G AHHAGSDSL+TA V++K+K  +E S
Sbjct: 188 VYDTKVMAGFCEG-LGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYEDS 247

Query: 351 PEHCDGFLYGL 358
                G +YG+
Sbjct: 248 -RFARGLIYGI 254

[Close]

BLAST of Spg037546 vs. ExPASy Swiss-Prot
Match: Q9S9P2 (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=CAF1-2 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.6e-44
Identity = 102/264 (38.64%), Postives = 154/264 (58.33%), Query Frame = 0


Query: 112 VRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRGAPQ--------EHFYEDL 171
           +R+VW+HNL QE+AL+   +  FP VA DTEFPG +  T    P         E+ Y+ L
Sbjct: 16  IREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTL 75

Query: 172 KFNVNHLKILQLGLTLANESGDV-------AMTWEFNFSDFDETTDLHSPTSIQFLKSKG 231
           K NVN LK++QLGLTL++E G++          W+FNF +F+  +D+ +  SI+ L+   
Sbjct: 76  KANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSA 135

Query: 232 FDFNKHRNQGIPSPQFRRAFL--PICCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLA 291
            D  K+   G+ + +F    +   +  +++I  W+TFH  YD  YLLKLL  K +P+ ++
Sbjct: 136 IDLEKNNECGVDAKRFAELLMGSGVVLNDKI-HWVTFHCGYDFGYLLKLLSGKELPEEIS 195

Query: 292 VFAAKAQRLLGTVSDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTAS 351
            F  + ++    V D+K+++  C  L     GLEK+A+LL V+R G +H AGSDSLLT  
Sbjct: 196 DFFDQMEKFFPVVYDIKYLMGFCTNLYG---GLEKIAELLGVKRVGISHQAGSDSLLTLR 255

Query: 352 VYVKMKK-RFEFSPEHCDGFLYGL 358
            ++KMK+  F  S     GFL+GL
Sbjct: 256 TFIKMKEFFFTGSLLKYSGFLFGL 275

[Close]

BLAST of Spg037546 vs. ExPASy Swiss-Prot
Match: O64773 (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.3e-40
Identity = 96/228 (42.11%), Postives = 131/228 (57.46%), Query Frame = 0


Query: 114 QVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRGAPQEHFYEDLKFNVNHLKIL 173
           +VW  N   E+  +  CL     +A DTEFPG L+ TP  A  E  Y D+KFNV++  ++
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 174 QLGLTLANESGDVAMTWEFNFSDFDETTDLHSPTSIQFLKSKGFDFNKHRNQGIPSPQFR 233
           QLGLTL  +   +  TWE N SDF+E+  L +  SI FLK+ G D +K R +GI   +F 
Sbjct: 64  QLGLTLFGKG--ITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIGIEEFF 123

Query: 234 RAFLPICCSNR-IAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKAQRLLGT-VSDLK 293
             F  I        +W+TF G YD AYLLK L  K +P++   F    Q+LLG  V D+K
Sbjct: 124 MEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVK 183

Query: 294 HIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKM 340
            +   C   L+   GL+++A +L + R G AHHAGSDS LTA V+ K+
Sbjct: 184 KMAGLCSG-LSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKL 228

[Close]

BLAST of Spg037546 vs. ExPASy TrEMBL
Match: A0A5A7TN62 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G002920 PE=3 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.9e-95
Identity = 176/255 (69.02%), Postives = 205/255 (80.39%), Query Frame = 0


Query: 109 MTLVRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRGAPQEHFYEDLKFNVN 168
           M+ VRQVW HNL QEL +LN  L +FPV+A DTEFPGFLR T RGAP+EHFY+DLKFN+N
Sbjct: 1   MSFVRQVWYHNLTQELVILNDQLFKFPVIAMDTEFPGFLRSTLRGAPEEHFYQDLKFNLN 60

Query: 169 HLKILQLGLTLANESGDVAMTWEFNFSDFDETTDLHSPTSIQFLKS-KGFDFNKHRNQGI 228
           HLKILQLGLTL +E+  V ++W F FSDFDE TD  SPTSIQ+LK+ KGF+F K R  GI
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGI 120

Query: 229 PSPQFRRAFLPICCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKAQRLLGTV 288
           PS +FRRAFLPI  SNRI KW+TFHG YDVAYLLKL+MI+TMP+S+  FA  AQR LGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTV 180

Query: 289 SDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKMKKRFEFSP 348
           +DLKH+IRNC+YL+NGELGL++LA+LLNV  N T  + GSDSLL A  Y KMKK  +FS 
Sbjct: 181 NDLKHMIRNCEYLMNGELGLKRLAELLNV--NDTIFNGGSDSLLIALAYAKMKKTLKFSS 240

Query: 349 EHCDGFLYGLHYRIR 363
           E  DGFLYG HYRIR
Sbjct: 241 EITDGFLYGFHYRIR 253

[Close]

BLAST of Spg037546 vs. ExPASy TrEMBL
Match: A0A5D3D333 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001870 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 3.3e-95
Identity = 175/255 (68.63%), Postives = 206/255 (80.78%), Query Frame = 0


Query: 109 MTLVRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRGAPQEHFYEDLKFNVN 168
           M+ VR+VW HN  QELA+LN  L +FPV+A DTEFPGFLR TPRGAP+EHFY+DLKFN+N
Sbjct: 1   MSFVRKVWYHNFIQELAILNDQLFKFPVIAMDTEFPGFLRSTPRGAPEEHFYQDLKFNLN 60

Query: 169 HLKILQLGLTLANESGDVAMTWEFNFSDFDETTDLHSPTSIQFLKS-KGFDFNKHRNQGI 228
           HLKILQLGLTL +E+  V ++W F FSDFDE TD  SPTSIQ+LK+ KGF+F K R  GI
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGI 120

Query: 229 PSPQFRRAFLPICCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKAQRLLGTV 288
           PS +FRRAFLPI  SNRI KW+TFHG YDVAYLLKL+MI+TMP+S+  FA  AQR LGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTV 180

Query: 289 SDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKMKKRFEFSP 348
           +DLKH+IRNC+YL+NGELGL++LA+LLNV  N T  + GSDSLL A  Y KMKK  +FS 
Sbjct: 181 NDLKHMIRNCEYLMNGELGLKRLAELLNV--NDTIFNGGSDSLLIALAYAKMKKTLKFSS 240

Query: 349 EHCDGFLYGLHYRIR 363
           E  DGFLYG +YRIR
Sbjct: 241 EITDGFLYGFYYRIR 253

[Close]

BLAST of Spg037546 vs. ExPASy TrEMBL
Match: A0A1S3BY95 (Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494884 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 3.3e-95
Identity = 175/255 (68.63%), Postives = 206/255 (80.78%), Query Frame = 0


Query: 109 MTLVRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRGAPQEHFYEDLKFNVN 168
           M+ VR+VW HN  QELA+LN  L +FPV+A DTEFPGFLR TPRGAP+EHFY+DLKFN+N
Sbjct: 1   MSFVRKVWYHNFIQELAILNDQLFKFPVIAMDTEFPGFLRSTPRGAPEEHFYQDLKFNLN 60

Query: 169 HLKILQLGLTLANESGDVAMTWEFNFSDFDETTDLHSPTSIQFLKS-KGFDFNKHRNQGI 228
           HLKILQLGLTL +E+  V ++W F FSDFDE TD  SPTSIQ+LK+ KGF+F K R  GI
Sbjct: 61  HLKILQLGLTLMDENEHVGLSWVFTFSDFDEQTDFSSPTSIQYLKNKKGFEFKKQRKDGI 120

Query: 229 PSPQFRRAFLPICCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKAQRLLGTV 288
           PS +FRRAFLPI  SNRI KW+TFHG YDVAYLLKL+MI+TMP+S+  FA  AQR LGTV
Sbjct: 121 PSAEFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMMIRTMPESMVEFAIIAQRHLGTV 180

Query: 289 SDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKMKKRFEFSP 348
           +DLKH+IRNC+YL+NGELGL++LA+LLNV  N T  + GSDSLL A  Y KMKK  +FS 
Sbjct: 181 NDLKHMIRNCEYLMNGELGLKRLAELLNV--NDTIFNGGSDSLLIALAYAKMKKTLKFSS 240

Query: 349 EHCDGFLYGLHYRIR 363
           E  DGFLYG +YRIR
Sbjct: 241 EITDGFLYGFYYRIR 253

[Close]

BLAST of Spg037546 vs. ExPASy TrEMBL
Match: A0A0A0KTU4 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G011090 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 1.8e-88
Identity = 168/252 (66.67%), Postives = 198/252 (78.57%), Query Frame = 0


Query: 112 VRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRGAPQEHFYEDLKFNVNHLK 171
           VRQVW HNL QELA+LN  L +FPV+  DTEFPGFLR TPRGAPQEH Y+DLKFNVNHLK
Sbjct: 5   VRQVWYHNLAQELAILNDHLFKFPVIVMDTEFPGFLRSTPRGAPQEHLYQDLKFNVNHLK 64

Query: 172 ILQLGLTLANESGDVAMTWEFNFSDFDETTDLHSPTSIQFLK-SKGFDFNKHRNQGIPSP 231
           ILQLGLTL +E+  V ++W F FSDFDE TDL SPTS+Q+LK +KGF+F K R  GIPS 
Sbjct: 65  ILQLGLTLMDENEHVGLSWVFTFSDFDEQTDLSSPTSMQYLKNNKGFEFKKQRKDGIPSA 124

Query: 232 QFRRAFLPICCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKAQRLLGTVSDL 291
           +FRRAFLPI  SNRI KW+TFHG YDVAYLLKL++IK MP+S+  FA  AQR LGTV+DL
Sbjct: 125 EFRRAFLPIFSSNRITKWITFHGIYDVAYLLKLMIIKAMPESMVEFAIIAQRFLGTVNDL 184

Query: 292 KHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKMKKRFEFSPEHC 351
           K++I +C+ L+ GELGL++LA+LL+V  N T    GSDSLL A  YVKMKK  + S E+ 
Sbjct: 185 KYMIGHCERLMKGELGLKRLAELLDV--NDTVFSGGSDSLLIALAYVKMKK-LKLSSENT 244

Query: 352 DGFLYGLHYRIR 363
            GFLYG  YRIR
Sbjct: 245 GGFLYGFQYRIR 253

[Close]

BLAST of Spg037546 vs. ExPASy TrEMBL
Match: A0A6J1DLA5 (Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111021965 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 8.5e-83
Identity = 165/297 (55.56%), Postives = 202/297 (68.01%), Query Frame = 0


Query: 113 RQVWSHNLPQELALLNACLSQFPVVAFDTEF----------------------------- 172
           R+VWS+NL +EL +LN  L +FP+VA DTEF                             
Sbjct: 19  REVWSYNLHKELEILNEYLPEFPIVAIDTEFPGIGLLKDNRIYFLSLAGKYFYARKLDDE 78

Query: 173 PGFLRCTPRGAPQEHFYEDLKFNVNHLKILQLGLTLANESGDVAMTWEFNFSDFDETTDL 232
           PGFLR TP+G  +E FY+ L+FNVN L ILQLGLTLAN++G+VAMTWEFNF DFD  +D+
Sbjct: 79  PGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLANQNGNVAMTWEFNFRDFDHISDM 138

Query: 233 HSPTSI-QFLKSKGFDFNKHRNQGIPSPQFRRAFLPICCSNRIAKWLTFHGFYDVAYLLK 292
              +S+  FLK+KGFDF K +  GI    F   FLPIC S RI +W+TFHGFYD+AYLLK
Sbjct: 139 EGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLK 198

Query: 293 LLMIKTMPQSLAVFAAKAQRLLGTVSDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTA 352
           LL IK +P S+A FAA AQ LLGTVSDLKH+ R CD LL+G+LGL+KLAKLL+V+R G A
Sbjct: 199 LLKIKYIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLAKLLDVKRIGIA 258

Query: 353 HHAGSDSLLTASVYVKMKKRFEFSPEHCDGFLYGLHYRIRRRPVIGNVVIPPFRQPP 380
           H AGSDSLLTA+VY KMK+ F+   E  +GFLYGL +RI+    I  +V P    PP
Sbjct: 259 HFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFQPIVKIVDPSAMTPP 315

[Close]

BLAST of Spg037546 vs. TAIR 10
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 186.0 bits (471), Expect = 5.7e-47
Identity = 106/259 (40.93%), Postives = 148/259 (57.14%), Query Frame = 0


Query: 112 VRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRG---APQEHFYEDLKFNVN 171
           +R+VW+ NL  E+AL+   +  FP VA DTEFPG + C P G      E+ YE LK NVN
Sbjct: 12  IREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIV-CRPVGTFKTNTEYHYETLKTNVN 71

Query: 172 HLKILQLGLTLANESGDVA--------MTWEFNFSDFDETTDLHSPTSIQFLKSKGFDFN 231
            LK++QLGLT ++E G++           W+FNF +FD  +D+++  SI+ L+  G DF 
Sbjct: 72  ILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFV 131

Query: 232 KHRNQGIPSPQFRRAFLPI-CCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAK 291
           K+   GI S +F    +      N    W+TFH  YD  YLLKLL  + +P++   F   
Sbjct: 132 KNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEM 191

Query: 292 AQRLLGTVSDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKM 351
                  V D+KH+++ C+ L     GL KLA+LL+VER G  H AGSDSLLT+  + K+
Sbjct: 192 ISVYFPRVYDIKHLMKFCNSLHG---GLNKLAELLDVERVGICHQAGSDSLLTSCTFRKL 251

Query: 352 KKRFEF-SPEHCDGFLYGL 358
           ++ F   S E   G LYGL
Sbjct: 252 QENFFIGSMEKYSGVLYGL 266

[Close]

BLAST of Spg037546 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 184.5 bits (467), Expect = 1.7e-46
Identity = 108/258 (41.86%), Postives = 144/258 (55.81%), Query Frame = 0


Query: 112 VRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRG---APQEHFYEDLKFNVN 171
           +R+VW+ NL +E+ L+   +  FP VA DTEFPG +   P G   +  ++ YE LK NVN
Sbjct: 12  IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV-VRPVGTFKSNADYHYETLKTNVN 71

Query: 172 HLKILQLGLTLANESG-------DVAMTWEFNFSDFDETTDLHSPTSIQFLKSKGFDFNK 231
            LK++QLGLT +NE G       D    W+FNF +FD  +D+ +  SI+ LK  G D  K
Sbjct: 72  ILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAK 131

Query: 232 HRNQGIPSPQFRRAFLPI-CCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKA 291
           +   GI S +F    +      N    W+TFH  YD  YLLKLL  + +P S   F    
Sbjct: 132 NTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLI 191

Query: 292 QRLLGTVSDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKMK 351
                TV D+KH+++ C+ L     GL KLA+LL VER G  H AGSDSLLT+  + K+K
Sbjct: 192 NVYFPTVYDIKHLMKFCNSLHG---GLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLK 251

Query: 352 KRFEFSPEH-CDGFLYGL 358
           + F   P H   G LYGL
Sbjct: 252 ENFFVGPLHKYSGVLYGL 265

[Close]

BLAST of Spg037546 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 184.5 bits (467), Expect = 1.7e-46
Identity = 108/258 (41.86%), Postives = 144/258 (55.81%), Query Frame = 0


Query: 112 VRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRG---APQEHFYEDLKFNVN 171
           +R+VW+ NL +E+ L+   +  FP VA DTEFPG +   P G   +  ++ YE LK NVN
Sbjct: 12  IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV-VRPVGTFKSNADYHYETLKTNVN 71

Query: 172 HLKILQLGLTLANESG-------DVAMTWEFNFSDFDETTDLHSPTSIQFLKSKGFDFNK 231
            LK++QLGLT +NE G       D    W+FNF +FD  +D+ +  SI+ LK  G D  K
Sbjct: 72  ILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAK 131

Query: 232 HRNQGIPSPQFRRAFLPI-CCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKA 291
           +   GI S +F    +      N    W+TFH  YD  YLLKLL  + +P S   F    
Sbjct: 132 NTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLI 191

Query: 292 QRLLGTVSDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKMK 351
                TV D+KH+++ C+ L     GL KLA+LL VER G  H AGSDSLLT+  + K+K
Sbjct: 192 NVYFPTVYDIKHLMKFCNSLHG---GLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLK 251

Query: 352 KRFEFSPEH-CDGFLYGL 358
           + F   P H   G LYGL
Sbjct: 252 ENFFVGPLHKYSGVLYGL 265

[Close]

BLAST of Spg037546 vs. TAIR 10
Match: AT1G80780.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 184.5 bits (467), Expect = 1.7e-46
Identity = 108/258 (41.86%), Postives = 144/258 (55.81%), Query Frame = 0


Query: 112 VRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRG---APQEHFYEDLKFNVN 171
           +R+VW+ NL +E+ L+   +  FP VA DTEFPG +   P G   +  ++ YE LK NVN
Sbjct: 12  IREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIV-VRPVGTFKSNADYHYETLKTNVN 71

Query: 172 HLKILQLGLTLANESG-------DVAMTWEFNFSDFDETTDLHSPTSIQFLKSKGFDFNK 231
            LK++QLGLT +NE G       D    W+FNF +FD  +D+ +  SI+ LK  G D  K
Sbjct: 72  ILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAK 131

Query: 232 HRNQGIPSPQFRRAFLPI-CCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKA 291
           +   GI S +F    +      N    W+TFH  YD  YLLKLL  + +P S   F    
Sbjct: 132 NTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLI 191

Query: 292 QRLLGTVSDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKMK 351
                TV D+KH+++ C+ L     GL KLA+LL VER G  H AGSDSLLT+  + K+K
Sbjct: 192 NVYFPTVYDIKHLMKFCNSLHG---GLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLK 251

Query: 352 KRFEFSPEH-CDGFLYGL 358
           + F   P H   G LYGL
Sbjct: 252 ENFFVGPLHKYSGVLYGL 265

[Close]

BLAST of Spg037546 vs. TAIR 10
Match: AT1G06450.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 183.3 bits (464), Expect = 3.7e-46
Identity = 97/251 (38.65%), Postives = 147/251 (58.57%), Query Frame = 0


Query: 111 LVRQVWSHNLPQELALLNACLSQFPVVAFDTEFPGFLRCTPRGAPQEHFYEDLKFNVNHL 170
           L R+VW  N+ +E+A +  CL +FP++AFDTE+PG +  T   +  +  Y  +K NV + 
Sbjct: 8   LARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVENT 67

Query: 171 KILQLGLTLANESGDVAMTWEFNFSDFDETTDLHSPTSIQFLKSKGFDFNKHRNQGIPSP 230
           K++Q G TL N  G++   WE NFS+F + +D  +  SI+FL+  G D  K R++G+   
Sbjct: 68  KLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGV--D 127

Query: 231 QFRRAFLP----ICCSNRIAKWLTFHGFYDVAYLLKLLMIKTMPQSLAVFAAKAQRLLGT 290
            F   F P    +  S +  +++TF G YD AY L +L    +P++   FA +  ++ G 
Sbjct: 128 MFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFGQ 187

Query: 291 VSDLKHIIRNCDYLLNGELGLEKLAKLLNVERNGTAHHAGSDSLLTASVYVKMKKRFEFS 350
           V D K +   C+  L   LGL KLA+LL + R G AHHAGSDSL+TA V++K+K  +E S
Sbjct: 188 VYDTKVMAGFCEG-LGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHVYEDS 247

Query: 351 PEHCDGFLYGL 358
                G +YG+
Sbjct: 248 -RFARGLIYGI 254

The following BLAST results are available for this feature:

BLAST of Spg037546 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890962.1	3.2e-100	70.98	putative CCR4-associated factor 1 homolog 8 [Benincasa hispida]	[more]
KAA0044544.1	4.0e-95	69.02	putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa]	[more]
XP_008454486.1	6.9e-95	68.63	PREDICTED: putative CCR4-associated factor 1 homolog 8 [Cucumis melo] >TYK17039....	[more]
XP_004151393.1	3.7e-88	66.67	putative CCR4-associated factor 1 homolog 8 [Cucumis sativus]	[more]
KAE8649090.1	4.9e-85	66.53	hypothetical protein Csa_014788 [Cucumis sativus]	[more]

BLAST of Spg037546 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKZ2	8.0e-46	40.93	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SAI2	2.3e-45	41.86	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SHJ0	5.2e-45	38.65	Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9S9P2	2.6e-44	38.64	Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
O64773	2.3e-40	42.11	Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of Spg037546 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TN62	1.9e-95	69.02	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3D333	3.3e-95	68.63	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3BY95	3.3e-95	68.63	Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC103494884 PE=3 SV=1	[more]
A0A0A0KTU4	1.8e-88	66.67	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_4G011090 PE=3 SV...	[more]
A0A6J1DLA5	8.5e-83	55.56	Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111021965 PE=...	[more]

BLAST of Spg037546 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32070.1	5.7e-47	40.93	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	1.7e-46	41.86	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	1.7e-46	41.86	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.3	1.7e-46	41.86	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G06450.1	3.7e-46	38.65	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 115..228 e-value: 7.2E-12 score: 45.2
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 247..335 e-value: 1.3E-5 score: 24.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 102..360 e-value: 4.8E-76 score: 257.4
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 110..364
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 110..364
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 109..344

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg037546.1	Spg037546.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030015	CCR4-NOT core complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000932	P-body
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity